Wall clock time and date at job start Tue Mar 31 2020 22:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86806 * 119.99990 * 2 1 4 4 H 1.48497 * 109.47132 * 270.00540 * 3 2 1 5 5 H 1.48507 * 109.46762 * 30.00213 * 3 2 1 6 6 H 1.48496 * 109.47125 * 149.99693 * 3 2 1 7 7 C 1.38886 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00050 * 159.44425 * 7 2 1 9 9 N 1.37142 * 120.00088 * 339.44766 * 7 2 1 10 10 C 1.34775 * 119.99970 * 160.47539 * 9 7 2 11 11 O 1.21283 * 119.99925 * 184.20274 * 10 9 7 12 12 C 1.50702 * 120.00139 * 4.19452 * 10 9 7 13 13 N 1.46501 * 109.46868 * 180.02562 * 12 10 9 14 14 N 1.39863 * 120.10841 * 269.72337 * 13 12 10 15 15 C 1.29039 * 122.19395 * 179.67945 * 14 13 12 16 16 N 1.37709 * 121.78376 * 0.61581 * 15 14 13 17 17 N 1.39930 * 133.10131 * 179.72163 * 16 15 14 18 18 C 1.31303 * 108.84118 * 179.97438 * 17 16 15 19 19 C 1.39093 * 108.91755 * 359.97438 * 18 17 16 20 20 C 1.37311 * 119.55649 * 359.68592 * 16 15 14 21 21 C 1.35304 * 120.11045 * 90.00586 * 13 12 10 22 22 O 1.21803 * 121.03752 * 0.02562 * 21 13 12 23 23 C 1.39783 * 120.00012 * 340.47386 * 9 7 2 24 24 C 1.38964 * 120.07922 * 288.64533 * 23 9 7 25 25 C 1.38079 * 119.92460 * 180.29443 * 24 23 9 26 26 C 1.38311 * 120.07780 * 359.97438 * 25 24 23 27 27 C 1.38314 * 120.15418 * 359.97438 * 26 25 24 28 28 C 1.38079 * 120.08039 * 0.02612 * 27 26 25 29 29 H 0.96998 * 120.00058 * 5.09953 * 1 2 3 30 30 H 1.08996 * 109.47466 * 300.00299 * 12 10 9 31 31 H 1.09001 * 109.47159 * 60.00472 * 12 10 9 32 32 H 1.07994 * 119.10869 * 180.30056 * 15 14 13 33 33 H 1.08002 * 125.54293 * 179.97438 * 18 17 16 34 34 H 1.07995 * 126.21547 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.03680 * 0.24805 * 24 23 9 36 36 H 1.08000 * 119.96358 * 179.97438 * 25 24 23 37 37 H 1.07996 * 119.92053 * 179.97438 * 26 25 24 38 38 H 1.08002 * 119.95581 * 180.02562 * 27 26 25 39 39 H 1.07998 * 120.04035 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5458 1.4402 0.7001 7 6 2.0087 -1.2028 0.0005 8 1 3.0371 -1.2326 -0.3279 9 7 1.3885 -2.3525 0.4180 10 6 1.8876 -3.5537 0.0650 11 8 1.2976 -4.5686 0.3694 12 6 3.1787 -3.6356 -0.7079 13 7 3.5041 -5.0402 -0.9676 14 7 4.2835 -5.7599 -0.0561 15 6 4.5890 -6.9998 -0.2414 16 7 4.1749 -7.6897 -1.3590 17 7 4.3665 -9.0050 -1.7962 18 6 3.7530 -9.1633 -2.9462 19 6 3.1417 -7.9649 -3.2998 20 6 3.4104 -7.0514 -2.3043 21 6 3.0564 -5.6439 -2.0926 22 8 2.3807 -5.0374 -2.9045 23 6 0.2388 -2.2786 1.2096 24 6 0.3299 -1.8654 2.5332 25 6 -0.8070 -1.7994 3.3141 26 6 -2.0356 -2.1434 2.7801 27 6 -2.1301 -2.5541 1.4627 28 6 -0.9974 -2.6225 0.6761 29 1 -0.4850 0.8367 -0.0747 30 1 3.0693 -3.1073 -1.6550 31 1 3.9796 -3.1781 -0.1271 32 1 5.1900 -7.5089 0.4974 33 1 3.7272 -10.0755 -3.5238 34 1 2.5618 -7.7836 -4.1927 35 1 1.2890 -1.5969 2.9510 36 1 -0.7368 -1.4787 4.3430 37 1 -2.9231 -2.0912 3.3932 38 1 -3.0912 -2.8216 1.0489 39 1 -1.0719 -2.9437 -0.3524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321759470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:54 Heat of formation + Delta-G solvation = 121.874638 kcal Electronic energy + Delta-G solvation = -28854.302510 eV Core-core repulsion = 24766.446181 eV Total energy + Delta-G solvation = -4087.856328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.18807 -39.85018 -39.06956 -37.41521 -37.18804 -34.85952 -33.73687 -31.80146 -31.10054 -30.84694 -29.94550 -29.32544 -27.37944 -25.06548 -24.37100 -23.76758 -21.81660 -21.58040 -21.37314 -19.62035 -19.41739 -18.21996 -17.49346 -16.92670 -16.37953 -15.97216 -15.65492 -15.49580 -14.95632 -14.89807 -14.62156 -14.45189 -14.10960 -13.80589 -13.54074 -13.29546 -13.24112 -12.96345 -12.57312 -12.48387 -11.87769 -11.68034 -11.63686 -11.44483 -11.34719 -11.18220 -11.04751 -10.59030 -10.50907 -10.38171 -10.31807 -10.08730 -9.53665 -9.45595 -8.90304 -8.31462 -8.20795 -7.92438 -7.51291 -6.41138 -4.12659 0.52991 1.47054 1.69464 2.17107 2.38269 2.39247 2.44525 3.02612 3.14581 3.16692 3.19458 3.50786 3.62926 3.95651 4.07162 4.48119 4.76187 4.78021 4.93941 4.99564 5.03779 5.42966 5.57765 5.68332 5.73442 5.75983 5.83857 5.87679 5.91224 5.99623 6.16388 6.31052 6.37368 6.51369 6.73523 6.97651 7.12672 7.21463 7.27924 7.39774 7.53938 7.61117 7.69087 7.86748 7.90197 8.30687 8.87608 9.21269 9.64449 10.50701 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.003612 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.754943 B = 7750.052803 C = 8668.083414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.053 3.947 3 Si 0.917 3.083 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.369 4.369 8 H 0.103 0.897 9 N -0.402 5.402 10 C 0.453 3.547 11 O -0.586 6.586 12 C 0.134 3.866 13 N -0.408 5.408 14 N -0.239 5.239 15 C 0.311 3.689 16 N -0.332 5.332 17 N -0.256 5.256 18 C 0.063 3.937 19 C -0.174 4.174 20 C 0.023 3.977 21 C 0.558 3.442 22 O -0.490 6.490 23 C 0.231 3.769 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.146 4.146 27 C -0.121 4.121 28 C -0.070 4.070 29 H 0.274 0.726 30 H 0.126 0.874 31 H 0.117 0.883 32 H 0.227 0.773 33 H 0.204 0.796 34 H 0.168 0.832 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.884 -9.854 -1.441 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.157 4.157 3 Si 0.743 3.257 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.495 4.495 8 H 0.120 0.880 9 N -0.118 5.118 10 C 0.241 3.759 11 O -0.470 6.470 12 C 0.010 3.990 13 N -0.229 5.229 14 N -0.051 5.051 15 C 0.014 3.986 16 N -0.119 5.119 17 N -0.079 5.079 18 C -0.123 4.123 19 C -0.205 4.205 20 C -0.103 4.103 21 C 0.344 3.656 22 O -0.359 6.359 23 C 0.140 3.860 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.164 4.164 27 C -0.140 4.140 28 C -0.090 4.090 29 H 0.085 0.915 30 H 0.144 0.856 31 H 0.135 0.865 32 H 0.243 0.757 33 H 0.221 0.779 34 H 0.186 0.814 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.828 -9.494 -0.161 11.696 hybrid contribution -0.355 0.963 -1.168 1.555 sum 6.474 -8.531 -1.328 10.791 Atomic orbital electron populations 1.69932 1.06083 1.28349 1.42593 1.25258 0.95263 0.99824 0.95338 0.86089 0.79702 0.81268 0.78681 1.20078 1.20553 1.19099 1.19486 0.97401 0.84295 1.48300 0.87974 1.41203 1.22989 1.05128 1.42494 1.20196 0.88278 0.83687 0.83707 1.90602 1.62298 1.34920 1.59201 1.21411 0.97857 0.76013 1.03674 1.48681 1.45835 1.12190 1.16149 1.74556 1.09877 1.04980 1.15718 1.25177 0.98142 0.86940 0.88368 1.47534 1.38467 1.09306 1.16576 1.77521 1.23464 0.92652 1.14303 1.24110 0.95426 0.99284 0.93455 1.21638 1.06414 0.91247 1.01198 1.22030 1.00161 0.94119 0.93980 1.17663 0.80766 0.84789 0.82339 1.90948 1.36315 1.64783 1.43886 1.17145 0.86297 0.93781 0.88751 1.20970 0.98107 1.01878 0.93416 1.20683 0.92739 1.02030 0.98751 1.20772 0.96813 1.03183 0.95664 1.20735 0.97425 1.01564 0.94239 1.20853 0.91575 0.98097 0.98470 0.91480 0.85637 0.86501 0.75698 0.77920 0.81409 0.87156 0.87427 0.87625 0.87451 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.42 11.00 55.49 0.61 -20.81 16 2 C 0.05 1.28 5.09 -17.49 -0.09 1.19 16 3 Si 0.92 18.70 29.60 -169.99 -5.03 13.67 16 4 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.37 -8.90 9.00 -14.94 -0.13 -9.03 16 8 H 0.10 2.22 6.62 -52.49 -0.35 1.88 16 9 N -0.40 -9.98 2.67 -58.98 -0.16 -10.14 16 10 C 0.45 10.91 7.60 -10.99 -0.08 10.82 16 11 O -0.59 -15.70 16.14 5.55 0.09 -15.61 16 12 C 0.13 2.63 4.66 -5.19 -0.02 2.61 16 13 N -0.41 -7.62 3.01 -62.64 -0.19 -7.81 16 14 N -0.24 -3.77 11.42 29.88 0.34 -3.43 16 15 C 0.31 3.91 12.49 -89.08 -1.11 2.80 16 16 N -0.33 -4.62 3.98 -10.36 -0.04 -4.66 16 17 N -0.26 -3.12 12.67 30.54 0.39 -2.73 16 18 C 0.06 0.61 11.96 -17.46 -0.21 0.41 16 19 C -0.17 -2.12 10.89 -39.44 -0.43 -2.55 16 20 C 0.02 0.36 7.01 -82.18 -0.58 -0.21 16 21 C 0.56 10.67 7.74 -12.62 -0.10 10.57 16 22 O -0.49 -10.64 16.85 5.10 0.09 -10.55 16 23 C 0.23 5.73 2.55 -83.69 -0.21 5.52 16 24 C -0.12 -2.83 9.80 -39.37 -0.39 -3.21 16 25 C -0.12 -2.47 10.04 -39.61 -0.40 -2.87 16 26 C -0.15 -2.83 10.04 -39.53 -0.40 -3.23 16 27 C -0.12 -2.54 10.04 -39.61 -0.40 -2.93 16 28 C -0.07 -1.71 8.68 -39.37 -0.34 -2.06 16 29 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16 30 H 0.13 2.45 7.35 -51.93 -0.38 2.07 16 31 H 0.12 2.00 7.83 -51.93 -0.41 1.59 16 32 H 0.23 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 36 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.11 1.95 8.06 -52.49 -0.42 1.52 16 39 H 0.11 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -33.75 350.82 -7.16 -40.92 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -3.65 Total: 8.05 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -4.89 Total: 7.82 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.95 Total: -49.58 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: 0.18 Total: -26.16 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.75 -7.16 -40.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321759470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.790 kcal (2) G-P(sol) polarization free energy of solvation -33.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds