Wall clock time and date at job start Tue Mar 31 2020 22:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 120.00135 * 2 1 4 4 H 1.48500 * 109.47196 * 239.99966 * 3 2 1 5 5 H 1.48503 * 109.46802 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47225 * 119.99300 * 3 2 1 7 7 C 1.38951 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99576 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00368 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00115 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99808 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99662 * 180.02562 * 10 9 7 13 13 O 1.45200 * 109.46787 * 180.02562 * 12 10 9 14 14 C 1.34770 * 117.00318 * 179.97438 * 13 12 10 15 15 O 1.21537 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.47224 * 120.00582 * 179.97438 * 14 13 12 17 17 C 1.47062 * 127.20140 * 354.24233 * 16 14 13 18 18 C 1.34150 * 105.95363 * 180.02562 * 17 16 14 19 19 O 1.34227 * 109.14491 * 359.74156 * 18 17 16 20 20 C 1.33631 * 110.91788 * 0.44706 * 19 18 17 21 21 C 1.50701 * 125.80529 * 179.81978 * 20 19 18 22 22 O 1.42890 * 109.54396 * 233.67896 * 21 20 19 23 23 C 1.53185 * 109.61603 * 353.90302 * 21 20 19 24 24 C 1.53090 * 109.16255 * 176.89528 * 23 21 20 25 25 O 1.42911 * 109.41163 * 302.38301 * 24 23 21 26 26 C 1.42907 * 114.09404 * 61.16670 * 25 24 23 27 27 C 1.53098 * 109.41124 * 298.83532 * 26 25 24 28 28 H 0.96998 * 120.00295 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99724 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47403 * 60.00427 * 12 10 9 31 31 H 1.09001 * 109.46973 * 299.99488 * 12 10 9 32 32 H 1.08002 * 127.01867 * 359.97438 * 17 16 14 33 33 H 1.07999 * 125.43342 * 179.97438 * 18 17 16 34 34 H 0.96703 * 114.00647 * 57.47917 * 22 21 20 35 35 H 1.09004 * 109.51613 * 296.79829 * 23 21 20 36 36 H 1.08996 * 109.52449 * 56.98466 * 23 21 20 37 37 H 1.09004 * 109.47796 * 182.41041 * 24 23 21 38 38 H 1.08994 * 109.49188 * 62.37294 * 24 23 21 39 39 H 1.08994 * 109.47814 * 178.86141 * 26 25 24 40 40 H 1.08994 * 109.49395 * 58.82470 * 26 25 24 41 41 H 1.08994 * 109.52661 * 297.70760 * 27 26 25 42 42 H 1.08997 * 109.57515 * 177.54698 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0000 13 8 2.1873 -5.9666 0.0007 14 6 1.6722 -7.2120 0.0008 15 8 0.4673 -7.3713 0.0008 16 6 2.5690 -8.3796 0.0010 17 6 4.0349 -8.3748 -0.1165 18 6 4.4128 -9.6611 -0.0681 19 8 3.3249 -10.4346 0.0718 20 6 2.2138 -9.6930 0.1095 21 6 0.8083 -10.2173 0.2538 22 8 -0.0027 -9.7090 -0.8072 23 6 0.8224 -11.7481 0.1998 24 6 -0.5984 -12.2720 0.4248 25 8 -1.0875 -11.7944 1.6798 26 6 -1.1676 -10.3704 1.7710 27 6 0.2304 -9.7702 1.6000 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6175 -4.9205 -0.8903 31 1 0.6168 -4.9209 0.8897 32 1 4.6761 -7.5121 -0.2212 33 1 5.4306 -10.0173 -0.1281 34 1 0.3255 -9.9241 -1.6910 35 1 1.1808 -12.0748 -0.7764 36 1 1.4805 -12.1340 0.9783 37 1 -0.5873 -13.3619 0.4301 38 1 -1.2473 -11.9188 -0.3765 39 1 -1.5666 -10.0906 2.7459 40 1 -1.8240 -9.9921 0.9874 41 1 0.8765 -10.1161 2.4068 42 1 0.1664 -8.6824 1.6257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324502367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:10 Heat of formation + Delta-G solvation = -192.093938 kcal Electronic energy + Delta-G solvation = -29770.315398 eV Core-core repulsion = 25296.949949 eV Total energy + Delta-G solvation = -4473.365450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.97259 -40.09801 -39.80847 -38.08536 -36.88009 -35.89958 -33.99223 -33.21739 -32.69648 -31.43621 -31.37030 -29.83390 -28.45173 -25.55173 -24.63361 -24.15759 -23.39535 -21.71340 -20.59865 -19.91544 -19.54218 -18.53602 -18.05005 -17.16048 -16.88010 -16.68145 -16.34612 -16.17716 -16.05604 -15.86068 -15.36367 -15.06694 -14.88117 -14.43966 -14.31242 -13.94319 -13.90161 -13.32158 -13.26934 -12.90844 -12.80581 -12.59509 -12.38373 -12.26600 -11.92129 -11.66441 -11.61414 -11.43852 -11.10822 -10.82418 -10.52643 -10.48870 -10.35638 -10.29834 -10.25613 -10.05156 -9.80089 -9.59145 -8.99827 -8.51376 -8.07788 -6.49402 -3.91496 0.92451 1.81870 2.33596 2.79758 3.06817 3.15728 3.22808 3.27665 3.61606 3.71565 3.74984 4.06102 4.12012 4.24533 4.44866 4.54968 4.65618 4.69431 4.94571 5.01108 5.08873 5.15756 5.19445 5.25858 5.26229 5.40331 5.44160 5.53646 5.54549 5.65049 5.67871 5.72110 5.82075 5.89716 6.06662 6.08094 6.63550 6.68736 6.93467 7.27764 7.47928 7.89804 8.00838 8.49409 9.07503 9.39997 9.90134 10.67813 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.002442 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.462317 B =11464.848828 C =12534.320790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.105 0.895 9 N -0.553 5.553 10 C 0.439 3.561 11 O -0.577 6.577 12 C 0.063 3.937 13 O -0.321 6.321 14 C 0.523 3.477 15 O -0.484 6.484 16 C -0.192 4.192 17 C -0.166 4.166 18 C -0.042 4.042 19 O -0.166 6.166 20 C 0.033 3.967 21 C 0.222 3.778 22 O -0.512 6.512 23 C -0.182 4.182 24 C 0.067 3.933 25 O -0.385 6.385 26 C 0.069 3.931 27 C -0.142 4.142 28 H 0.274 0.726 29 H 0.395 0.605 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.169 0.831 33 H 0.213 0.787 34 H 0.375 0.625 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.609 -24.822 -0.136 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.190 5.190 10 C 0.224 3.776 11 O -0.461 6.461 12 C -0.014 4.014 13 O -0.236 6.236 14 C 0.367 3.633 15 O -0.373 6.373 16 C -0.195 4.195 17 C -0.184 4.184 18 C -0.107 4.107 19 O -0.062 6.062 20 C -0.020 4.020 21 C 0.180 3.820 22 O -0.317 6.317 23 C -0.220 4.220 24 C -0.010 4.010 25 O -0.304 6.304 26 C -0.008 4.008 27 C -0.179 4.179 28 H 0.084 0.916 29 H 0.229 0.771 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.187 0.813 33 H 0.229 0.771 34 H 0.222 0.778 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.520 -24.852 0.536 24.863 hybrid contribution 0.511 1.198 -0.798 1.527 sum 1.031 -23.653 -0.262 23.677 Atomic orbital electron populations 1.69605 1.05988 1.28586 1.49612 1.25309 0.95686 0.99847 0.96899 0.85859 0.78753 0.80099 0.79180 1.19769 1.20860 1.19758 1.19670 0.93433 0.81782 1.48302 0.87705 1.41695 1.09370 1.04065 1.63865 1.19322 0.88326 0.84084 0.85902 1.90553 1.13456 1.86813 1.55257 1.22731 0.90795 0.84408 1.03494 1.86612 1.39881 1.13740 1.83328 1.19978 0.86517 0.82974 0.73834 1.90901 1.14872 1.86515 1.45060 1.20330 0.93783 0.91149 1.14256 1.23137 0.93100 0.98259 1.03952 1.24011 0.90629 0.89526 1.06539 1.83772 1.13872 1.38023 1.70491 1.23590 0.88899 0.88881 1.00657 1.19502 0.80298 0.91667 0.90506 1.86837 1.49459 1.79281 1.16099 1.22898 0.99987 0.94969 1.04138 1.22480 0.92544 0.99164 0.86805 1.87920 1.85640 1.21698 1.35114 1.22526 0.95221 0.80118 1.02932 1.22295 0.98262 1.04504 0.92865 0.91571 0.77140 0.89496 0.89567 0.81349 0.77068 0.77812 0.90048 0.89498 0.88719 0.92212 0.88411 0.91572 0.89957 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.15 13.05 55.50 0.72 -23.42 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.55 -14.07 5.29 -10.96 -0.06 -14.12 16 10 C 0.44 10.69 7.86 -10.99 -0.09 10.61 16 11 O -0.58 -16.15 16.08 -14.11 -0.23 -16.37 16 12 C 0.06 1.23 5.95 36.00 0.21 1.44 16 13 O -0.32 -6.23 9.67 -47.36 -0.46 -6.69 16 14 C 0.52 8.78 7.70 34.38 0.26 9.04 16 15 O -0.48 -8.30 11.87 -26.55 -0.32 -8.61 16 16 C -0.19 -2.69 6.22 -103.30 -0.64 -3.34 16 17 C -0.17 -1.99 11.05 -37.45 -0.41 -2.40 16 18 C -0.04 -0.37 12.03 29.29 0.35 -0.02 16 19 O -0.17 -1.68 9.93 7.67 0.08 -1.60 16 20 C 0.03 0.38 5.91 -34.94 -0.21 0.17 16 21 C 0.22 2.31 0.54 -91.58 -0.05 2.27 16 22 O -0.51 -5.63 9.83 -56.89 -0.56 -6.19 16 23 C -0.18 -1.45 4.72 -26.59 -0.13 -1.58 16 24 C 0.07 0.54 6.69 37.20 0.25 0.79 16 25 O -0.38 -4.06 10.77 -35.23 -0.38 -4.44 16 26 C 0.07 0.71 6.69 37.21 0.25 0.96 16 27 C -0.14 -1.59 4.90 -26.59 -0.13 -1.72 16 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 30 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.21 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.37 2.91 9.04 45.56 0.41 3.33 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.47 7.82 -51.93 -0.41 0.07 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.73 7.82 -51.93 -0.41 0.32 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.37 5.65 -51.93 -0.29 1.08 16 LS Contribution 359.59 15.07 5.42 5.42 Total: -1.00 -34.20 359.59 -5.70 -39.89 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -4.33 Total: 12.15 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -0.57 Total: 8.26 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.67 Total: -37.55 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.86 Total: -43.91 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.20 -5.70 -39.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324502367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.202 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds