Wall clock time and date at job start Tue Mar 31 2020 22:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 120.00135 * 2 1 4 4 H 1.48500 * 109.47196 * 239.99966 * 3 2 1 5 5 H 1.48503 * 109.46802 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47225 * 119.99300 * 3 2 1 7 7 C 1.38951 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99576 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00368 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00115 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99808 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99662 * 180.02562 * 10 9 7 13 13 O 1.45200 * 109.46787 * 180.02562 * 12 10 9 14 14 C 1.34770 * 117.00318 * 179.97438 * 13 12 10 15 15 O 1.21537 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.47224 * 120.00582 * 179.97438 * 14 13 12 17 17 C 1.47062 * 127.20140 * 354.24233 * 16 14 13 18 18 C 1.34150 * 105.95363 * 180.02562 * 17 16 14 19 19 O 1.34227 * 109.14491 * 359.74156 * 18 17 16 20 20 C 1.33631 * 110.91788 * 0.44706 * 19 18 17 21 21 C 1.50701 * 125.80529 * 179.81978 * 20 19 18 22 22 O 1.42890 * 109.54396 * 233.67896 * 21 20 19 23 23 C 1.53185 * 109.61603 * 353.90302 * 21 20 19 24 24 C 1.53090 * 109.16255 * 176.89528 * 23 21 20 25 25 O 1.42911 * 109.41163 * 302.38301 * 24 23 21 26 26 C 1.42907 * 114.09404 * 61.16670 * 25 24 23 27 27 C 1.53098 * 109.41124 * 298.83532 * 26 25 24 28 28 H 0.96998 * 120.00295 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99724 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47403 * 60.00427 * 12 10 9 31 31 H 1.09001 * 109.46973 * 299.99488 * 12 10 9 32 32 H 1.08002 * 127.01867 * 359.97438 * 17 16 14 33 33 H 1.07999 * 125.43342 * 179.97438 * 18 17 16 34 34 H 0.96703 * 114.00647 * 57.47917 * 22 21 20 35 35 H 1.09004 * 109.51613 * 296.79829 * 23 21 20 36 36 H 1.08996 * 109.52449 * 56.98466 * 23 21 20 37 37 H 1.09004 * 109.47796 * 182.41041 * 24 23 21 38 38 H 1.08994 * 109.49188 * 62.37294 * 24 23 21 39 39 H 1.08994 * 109.47814 * 178.86141 * 26 25 24 40 40 H 1.08994 * 109.49395 * 58.82470 * 26 25 24 41 41 H 1.08994 * 109.52661 * 297.70760 * 27 26 25 42 42 H 1.08997 * 109.57515 * 177.54698 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0000 13 8 2.1873 -5.9666 0.0007 14 6 1.6722 -7.2120 0.0008 15 8 0.4673 -7.3713 0.0008 16 6 2.5690 -8.3796 0.0010 17 6 4.0349 -8.3748 -0.1165 18 6 4.4128 -9.6611 -0.0681 19 8 3.3249 -10.4346 0.0718 20 6 2.2138 -9.6930 0.1095 21 6 0.8083 -10.2173 0.2538 22 8 -0.0027 -9.7090 -0.8072 23 6 0.8224 -11.7481 0.1998 24 6 -0.5984 -12.2720 0.4248 25 8 -1.0875 -11.7944 1.6798 26 6 -1.1676 -10.3704 1.7710 27 6 0.2304 -9.7702 1.6000 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6175 -4.9205 -0.8903 31 1 0.6168 -4.9209 0.8897 32 1 4.6761 -7.5121 -0.2212 33 1 5.4306 -10.0173 -0.1281 34 1 0.3255 -9.9241 -1.6910 35 1 1.1808 -12.0748 -0.7764 36 1 1.4805 -12.1340 0.9783 37 1 -0.5873 -13.3619 0.4301 38 1 -1.2473 -11.9188 -0.3765 39 1 -1.5666 -10.0906 2.7459 40 1 -1.8240 -9.9921 0.9874 41 1 0.8765 -10.1161 2.4068 42 1 0.1664 -8.6824 1.6257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324502367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:09 Heat of formation + Delta-G solvation = -216.948140 kcal Electronic energy + Delta-G solvation = -29771.393157 eV Core-core repulsion = 25296.949949 eV Total energy + Delta-G solvation = -4474.443209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.84335 -41.40428 -40.69503 -39.98036 -37.77795 -37.25586 -36.05054 -34.15391 -33.50700 -33.43409 -32.15298 -30.73333 -30.07144 -26.93775 -26.06802 -24.96448 -24.46137 -22.62329 -21.51239 -21.42062 -20.86085 -20.08663 -19.58632 -18.32010 -17.82540 -17.78217 -17.67747 -17.31692 -17.17877 -16.92032 -16.65217 -16.24674 -15.91434 -15.84284 -15.67072 -15.51343 -15.08415 -14.61391 -14.17231 -14.09638 -13.92353 -13.74732 -13.56585 -13.46219 -13.29089 -13.11313 -12.94567 -12.50759 -12.40437 -12.26831 -12.13697 -11.81242 -11.70068 -11.59096 -11.53979 -11.18080 -11.00079 -10.57522 -10.54268 -10.14170 -9.84883 -8.53867 -6.04920 -0.09051 0.94533 1.25795 1.36223 1.42392 1.53382 1.67171 1.83468 1.90874 2.28824 2.90895 2.95189 3.02945 3.11407 3.31452 3.51865 3.63573 3.68327 3.76378 3.94451 4.00613 4.13090 4.19310 4.24559 4.28596 4.41106 4.49903 4.59707 4.62673 4.74213 4.77231 4.79668 4.95941 5.00364 5.12057 5.22117 5.29647 5.35135 5.80720 5.86887 6.20898 6.43967 6.61386 6.66712 7.00621 7.37209 7.90735 8.63002 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.002442 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.462317 B =11464.848828 C =12534.320790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.340 4.340 8 H 0.084 0.916 9 N -0.556 5.556 10 C 0.436 3.564 11 O -0.618 6.618 12 C 0.075 3.925 13 O -0.343 6.343 14 C 0.521 3.479 15 O -0.493 6.493 16 C -0.227 4.227 17 C -0.200 4.200 18 C -0.008 4.008 19 O -0.156 6.156 20 C 0.048 3.952 21 C 0.220 3.780 22 O -0.528 6.528 23 C -0.172 4.172 24 C 0.062 3.938 25 O -0.397 6.397 26 C 0.073 3.927 27 C -0.144 4.144 28 H 0.282 0.718 29 H 0.400 0.600 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.160 0.840 33 H 0.261 0.739 34 H 0.387 0.613 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 -26.528 -0.345 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.102 0.898 9 N -0.194 5.194 10 C 0.223 3.777 11 O -0.505 6.505 12 C -0.002 4.002 13 O -0.258 6.258 14 C 0.366 3.634 15 O -0.382 6.382 16 C -0.230 4.230 17 C -0.219 4.219 18 C -0.073 4.073 19 O -0.051 6.051 20 C -0.006 4.006 21 C 0.178 3.822 22 O -0.335 6.335 23 C -0.210 4.210 24 C -0.015 4.015 25 O -0.316 6.316 26 C -0.003 4.003 27 C -0.181 4.181 28 H 0.091 0.909 29 H 0.235 0.765 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.178 0.822 33 H 0.276 0.724 34 H 0.236 0.764 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.901 -26.584 0.317 26.601 hybrid contribution 0.385 1.644 -0.745 1.845 sum 1.285 -24.940 -0.428 24.977 Atomic orbital electron populations 1.69667 1.06974 1.29862 1.48985 1.26147 0.96601 1.02620 0.95565 0.84907 0.77755 0.76034 0.79166 1.19446 1.19291 1.19451 1.19688 0.92940 0.83360 1.50867 0.89786 1.41729 1.09553 1.04150 1.63950 1.20072 0.88062 0.85355 0.84194 1.90514 1.15474 1.87701 1.56836 1.22487 0.90082 0.82386 1.05240 1.86605 1.40445 1.14719 1.84074 1.20420 0.87030 0.82605 0.73309 1.90887 1.15298 1.86397 1.45648 1.20373 0.94638 0.90957 1.17023 1.23187 0.92237 0.99683 1.06746 1.24804 0.91707 0.88157 1.02615 1.83826 1.13785 1.37686 1.69827 1.23744 0.89759 0.88055 0.99023 1.19606 0.79375 0.93319 0.89914 1.86808 1.49838 1.79778 1.17068 1.22851 1.00072 0.92608 1.05451 1.22695 0.92451 1.00457 0.85869 1.87905 1.85885 1.21359 1.36494 1.22457 0.94458 0.80305 1.03095 1.22270 0.99104 1.02870 0.93868 0.90895 0.76548 0.87652 0.87677 0.82194 0.72355 0.76372 0.87925 0.89219 0.86412 0.92201 0.87509 0.92666 0.89422 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.98 13.05 21.66 0.28 -48.70 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 3 Si 1.00 42.25 29.55 68.60 2.03 44.28 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.34 -19.28 9.68 84.04 0.81 -18.47 16 8 H 0.08 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.56 -29.09 5.29 -306.99 -1.62 -30.71 16 10 C 0.44 21.93 7.86 87.66 0.69 22.62 16 11 O -0.62 -36.00 16.08 15.74 0.25 -35.74 16 12 C 0.08 2.98 5.95 71.24 0.42 3.40 16 13 O -0.34 -13.70 9.67 -50.42 -0.49 -14.19 16 14 C 0.52 17.86 7.70 70.18 0.54 18.41 16 15 O -0.49 -17.16 11.87 26.66 0.32 -16.84 16 16 C -0.23 -6.33 6.22 -19.01 -0.12 -6.45 16 17 C -0.20 -4.66 11.05 23.65 0.26 -4.40 16 18 C -0.01 -0.12 12.03 66.89 0.80 0.69 16 19 O -0.16 -2.70 9.93 4.55 0.05 -2.66 16 20 C 0.05 1.04 5.91 25.28 0.15 1.19 16 21 C 0.22 4.31 0.54 -11.42 -0.01 4.30 16 22 O -0.53 -11.23 9.83 -128.27 -1.26 -12.49 16 23 C -0.17 -2.31 4.72 30.69 0.14 -2.16 16 24 C 0.06 0.86 6.69 72.01 0.48 1.34 16 25 O -0.40 -7.81 10.77 -148.98 -1.60 -9.41 16 26 C 0.07 1.48 6.69 72.01 0.48 1.96 16 27 C -0.14 -3.17 4.90 30.69 0.15 -3.02 16 28 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 30 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 31 H 0.11 3.73 8.14 -2.39 -0.02 3.72 16 32 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.26 1.18 8.06 -2.91 -0.02 1.15 16 34 H 0.39 5.60 9.04 -74.06 -0.67 4.93 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 1.19 8.12 -2.39 -0.02 1.17 16 37 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 0.84 7.82 -2.39 -0.02 0.82 16 39 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.06 1.22 7.82 -2.39 -0.02 1.20 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 2.10 5.65 -2.39 -0.01 2.09 16 Total: -1.00 -75.35 359.59 2.93 -72.42 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: -0.31 Total: 34.62 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 5.28 Total: 19.43 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -1.34 Total: -79.41 kcal Atomic # 8 Polarization: -88.60 SS G_CDS: -2.74 Total: -91.34 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -75.35 2.93 -72.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324502367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.531 kcal (2) G-P(sol) polarization free energy of solvation -75.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds