Wall clock time and date at job start Tue Mar 31 2020 22:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31281 * 1 3 3 Si 1.86806 * 120.00068 * 2 1 4 4 H 1.48495 * 109.47252 * 240.00320 * 3 2 1 5 5 H 1.48503 * 109.46861 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46956 * 120.00073 * 3 2 1 7 7 C 1.39005 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00077 * 179.97438 * 7 2 1 9 9 N 1.37297 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.36443 * 126.05884 * 179.97438 * 9 7 2 11 11 C 1.35786 * 107.49462 * 180.02562 * 10 9 7 12 12 N 1.40297 * 126.09491 * 179.97438 * 11 10 9 13 13 C 1.34780 * 120.00331 * 179.97438 * 12 11 10 14 14 O 1.21425 * 119.99592 * 359.97438 * 13 12 11 15 15 C 1.49189 * 120.00423 * 179.97438 * 13 12 11 16 16 O 1.21405 * 119.99975 * 359.97438 * 15 13 12 17 17 N 1.34774 * 119.99661 * 180.27496 * 15 13 12 18 18 C 1.39760 * 119.99660 * 175.15947 * 17 15 13 19 19 C 1.39484 * 119.74792 * 214.90162 * 18 17 15 20 20 C 1.36494 * 120.45323 * 179.75904 * 19 18 17 21 21 C 1.39700 * 119.86344 * 0.50857 * 20 19 18 22 22 C 1.46522 * 133.90891 * 179.76974 * 21 20 19 23 23 C 1.34231 * 107.01449 * 179.97438 * 22 21 20 24 24 N 1.36925 * 109.92650 * 0.02562 * 23 22 21 25 25 H 0.96998 * 125.07316 * 180.02562 * 24 23 22 26 26 C 1.37721 * 109.85170 * 359.97438 * 24 23 22 27 27 C 1.38432 * 119.75242 * 35.16970 * 18 17 15 28 28 C 1.40720 * 107.80516 * 0.22676 * 11 10 9 29 29 N 1.30879 * 108.37490 * 359.61419 * 28 11 10 30 30 H 0.96997 * 119.99768 * 359.97438 * 1 2 3 31 31 H 1.08000 * 126.25001 * 0.02562 * 10 9 7 32 32 H 0.97000 * 120.00322 * 359.97438 * 12 11 10 33 33 H 0.97001 * 120.00478 * 355.15522 * 17 15 13 34 34 H 1.08005 * 119.77826 * 0.02562 * 19 18 17 35 35 H 1.08001 * 120.06757 * 180.27515 * 20 19 18 36 36 H 1.08000 * 126.49195 * 0.02562 * 22 21 20 37 37 H 1.07999 * 125.03474 * 180.02562 * 23 22 21 38 38 H 1.08006 * 120.14259 * 0.02562 * 27 18 17 39 39 H 1.08003 * 125.81187 * 179.77552 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1005 1.6965 -1.2125 5 1 1.2818 2.7465 0.0006 6 1 3.1006 1.6964 1.2125 7 6 2.0079 -1.2038 -0.0005 8 1 3.0879 -1.2038 -0.0010 9 7 1.3215 -2.3929 -0.0005 10 6 1.8753 -3.6399 -0.0015 11 6 0.8573 -4.5386 -0.0017 12 7 0.9880 -5.9354 -0.0032 13 6 -0.1113 -6.7152 -0.0027 14 8 -1.2148 -6.2087 -0.0005 15 6 0.0277 -8.2006 -0.0048 16 8 1.1310 -8.7070 -0.0074 17 7 -1.0717 -8.9802 -0.0099 18 6 -0.9437 -10.3680 -0.1140 19 6 -1.8997 -11.1004 -0.8176 20 6 -1.7862 -12.4557 -0.9325 21 6 -0.7116 -13.1171 -0.3330 22 6 -0.2972 -14.5204 -0.2559 23 6 0.8352 -14.5566 0.4638 24 7 1.1802 -13.2905 0.8549 25 1 1.9608 -13.0640 1.3844 26 6 0.2543 -12.3867 0.3834 27 6 0.1280 -11.0060 0.4867 28 6 -0.3519 -3.8190 -0.0061 29 7 -0.0714 -2.5406 -0.0001 30 1 -0.4850 0.8400 0.0004 31 1 2.9305 -3.8700 -0.0021 32 1 1.8696 -6.3401 -0.0045 33 1 -1.9518 -8.5781 0.0588 34 1 -2.7333 -10.5911 -1.2784 35 1 -2.5277 -13.0162 -1.4825 36 1 -0.8061 -15.3654 -0.6957 37 1 1.3917 -15.4516 0.6995 38 1 0.8624 -10.4338 1.0342 39 1 -1.3429 -4.2485 -0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326721910.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:32 Heat of formation + Delta-G solvation = 90.092058 kcal Electronic energy + Delta-G solvation = -26868.387265 eV Core-core repulsion = 22779.152740 eV Total energy + Delta-G solvation = -4089.234525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52249 -40.67050 -39.68183 -38.29592 -37.13325 -34.83687 -33.99588 -33.18963 -31.79900 -30.36634 -29.61614 -28.61697 -27.93499 -25.52118 -24.32152 -23.19061 -21.75247 -21.03606 -20.87688 -20.30847 -19.54762 -18.88151 -17.77292 -17.48691 -17.20972 -16.13790 -15.83784 -15.61564 -15.49157 -15.18736 -14.68422 -14.46924 -14.24192 -14.16093 -13.80607 -13.72334 -13.49803 -13.29712 -13.06595 -13.01565 -12.16657 -12.04870 -11.78189 -11.69452 -11.51047 -11.29592 -11.14207 -10.82700 -10.60132 -10.39987 -10.34791 -9.61520 -9.26200 -9.21083 -8.91707 -8.25470 -8.16885 -7.75197 -6.83002 -6.63375 -4.31149 0.84711 1.28785 1.66963 2.40841 2.52925 2.90995 2.93588 3.01909 3.05683 3.23779 3.63531 3.71021 3.75341 3.89705 4.32196 4.49374 4.54037 4.65942 4.93881 4.95207 4.95574 5.07944 5.19954 5.32168 5.36079 5.69113 5.76063 6.07678 6.12125 6.15953 6.29898 6.31611 6.49259 6.56854 6.69782 6.83348 6.84823 6.95966 7.10932 7.12683 7.29414 7.67259 7.78366 8.00500 8.13588 8.40653 8.64346 9.27238 9.55778 10.32269 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.040693 B = 0.001838 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.920690 B =15234.425815 C =15820.321732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.137 5.137 10 C -0.077 4.077 11 C -0.071 4.071 12 N -0.579 5.579 13 C 0.485 3.515 14 O -0.520 6.520 15 C 0.515 3.485 16 O -0.510 6.510 17 N -0.644 5.644 18 C 0.161 3.839 19 C -0.159 4.159 20 C -0.054 4.054 21 C -0.124 4.124 22 C -0.203 4.203 23 C 0.046 3.954 24 N -0.595 5.595 25 H 0.416 0.584 26 C 0.112 3.888 27 C -0.132 4.132 28 C -0.025 4.025 29 N -0.260 5.260 30 H 0.277 0.723 31 H 0.149 0.851 32 H 0.409 0.591 33 H 0.425 0.575 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.145 0.855 37 H 0.169 0.831 38 H 0.139 0.861 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.584 -24.106 0.727 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.454 4.454 8 H 0.136 0.864 9 N 0.097 4.903 10 C -0.229 4.229 11 C -0.177 4.177 12 N -0.222 5.222 13 C 0.266 3.734 14 O -0.397 6.397 15 C 0.298 3.702 16 O -0.385 6.385 17 N -0.291 5.291 18 C 0.066 3.934 19 C -0.179 4.179 20 C -0.073 4.073 21 C -0.129 4.129 22 C -0.228 4.228 23 C -0.080 4.080 24 N -0.198 5.198 25 H 0.253 0.747 26 C 0.004 3.996 27 C -0.155 4.155 28 C -0.201 4.201 29 N -0.091 5.091 30 H 0.088 0.912 31 H 0.167 0.833 32 H 0.244 0.756 33 H 0.264 0.736 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.163 0.837 37 H 0.186 0.814 38 H 0.157 0.843 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.025 -22.676 0.790 22.689 hybrid contribution 1.274 -0.142 0.250 1.307 sum 1.300 -22.818 1.040 22.878 Atomic orbital electron populations 1.70193 1.06180 1.28326 1.34575 1.25672 0.95741 1.00382 0.95345 0.85864 0.79159 0.79417 0.79561 1.19072 1.20058 1.19085 1.19890 0.91769 0.80467 1.53294 0.86443 1.44572 1.04117 1.03369 1.38289 1.21297 0.96970 0.85186 1.19399 1.17237 0.94684 0.80445 1.25373 1.42112 1.08502 1.04669 1.66903 1.19393 0.85478 0.86361 0.82217 1.90679 1.25317 1.74031 1.49682 1.20473 0.84437 0.88603 0.76654 1.90729 1.25572 1.75401 1.46767 1.43095 1.10843 1.04390 1.70771 1.17235 0.96567 0.81795 0.97803 1.20453 1.00892 0.94197 1.02400 1.20030 0.96257 0.93127 0.97929 1.19245 0.96934 0.93503 1.03226 1.21679 0.98893 0.95002 1.07196 1.21823 0.98345 0.87250 1.00588 1.41821 1.24151 1.05550 1.48291 0.74725 1.17984 0.91518 0.90793 0.99310 1.20023 1.01032 0.90522 1.03912 1.24157 0.97937 0.90764 1.07211 1.78278 0.90055 1.14951 1.25822 0.91241 0.83325 0.75553 0.73637 0.85223 0.85457 0.83689 0.81369 0.84313 0.80506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.95 11.81 55.50 0.66 -20.29 16 2 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 3 Si 0.94 18.51 29.55 -169.99 -5.02 13.48 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.32 -8.33 10.25 -14.82 -0.15 -8.48 16 8 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 9 N -0.14 -3.68 3.73 -11.40 -0.04 -3.73 16 10 C -0.08 -1.78 11.50 -16.38 -0.19 -1.97 16 11 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 12 N -0.58 -10.65 5.45 -10.49 -0.06 -10.71 16 13 C 0.49 8.54 7.85 -11.71 -0.09 8.45 16 14 O -0.52 -10.22 13.62 5.43 0.07 -10.14 16 15 C 0.52 7.72 7.71 -11.71 -0.09 7.63 16 16 O -0.51 -8.14 13.89 5.45 0.08 -8.06 16 17 N -0.64 -8.09 5.31 -10.32 -0.05 -8.14 16 18 C 0.16 1.97 6.29 -83.71 -0.53 1.44 16 19 C -0.16 -1.63 9.88 -39.75 -0.39 -2.02 16 20 C -0.05 -0.53 10.04 -39.66 -0.40 -0.93 16 21 C -0.12 -1.34 6.37 -105.09 -0.67 -2.01 16 22 C -0.20 -1.72 11.08 -37.66 -0.42 -2.14 16 23 C 0.05 0.33 11.82 -16.69 -0.20 0.13 16 24 N -0.60 -5.02 6.08 -10.64 -0.06 -5.08 16 25 H 0.42 2.48 8.96 -40.82 -0.37 2.11 16 26 C 0.11 1.27 7.27 -84.00 -0.61 0.66 16 27 C -0.13 -1.66 8.71 -39.22 -0.34 -2.00 16 28 C -0.02 -0.64 10.85 -17.02 -0.18 -0.82 16 29 N -0.26 -7.39 10.39 30.81 0.32 -7.07 16 30 H 0.28 6.92 8.31 -40.82 -0.34 6.59 16 31 H 0.15 2.87 8.06 -52.49 -0.42 2.45 16 32 H 0.41 6.43 8.29 -40.82 -0.34 6.09 16 33 H 0.43 4.66 8.29 -40.82 -0.34 4.32 16 34 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.14 1.85 6.20 -52.48 -0.33 1.53 16 39 H 0.18 4.37 5.92 -52.48 -0.31 4.06 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -33.75 347.27 -7.16 -40.91 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -3.34 Total: 16.77 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -4.94 Total: -3.18 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.76 Total: -55.02 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.15 Total: -18.21 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.75 -7.16 -40.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326721910.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.004 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds