Wall clock time and date at job start Tue Mar 31 2020 22:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31281 * 1 3 3 Si 1.86806 * 120.00068 * 2 1 4 4 H 1.48495 * 109.47252 * 240.00320 * 3 2 1 5 5 H 1.48503 * 109.46861 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46956 * 120.00073 * 3 2 1 7 7 C 1.39005 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00077 * 179.97438 * 7 2 1 9 9 N 1.37297 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.36443 * 126.05884 * 179.97438 * 9 7 2 11 11 C 1.35786 * 107.49462 * 180.02562 * 10 9 7 12 12 N 1.40297 * 126.09491 * 179.97438 * 11 10 9 13 13 C 1.34780 * 120.00331 * 179.97438 * 12 11 10 14 14 O 1.21425 * 119.99592 * 359.97438 * 13 12 11 15 15 C 1.49189 * 120.00423 * 179.97438 * 13 12 11 16 16 O 1.21405 * 119.99975 * 359.97438 * 15 13 12 17 17 N 1.34774 * 119.99661 * 180.27496 * 15 13 12 18 18 C 1.39760 * 119.99660 * 175.15947 * 17 15 13 19 19 C 1.39484 * 119.74792 * 214.90162 * 18 17 15 20 20 C 1.36494 * 120.45323 * 179.75904 * 19 18 17 21 21 C 1.39700 * 119.86344 * 0.50857 * 20 19 18 22 22 C 1.46522 * 133.90891 * 179.76974 * 21 20 19 23 23 C 1.34231 * 107.01449 * 179.97438 * 22 21 20 24 24 N 1.36925 * 109.92650 * 0.02562 * 23 22 21 25 25 H 0.96998 * 125.07316 * 180.02562 * 24 23 22 26 26 C 1.37721 * 109.85170 * 359.97438 * 24 23 22 27 27 C 1.38432 * 119.75242 * 35.16970 * 18 17 15 28 28 C 1.40720 * 107.80516 * 0.22676 * 11 10 9 29 29 N 1.30879 * 108.37490 * 359.61419 * 28 11 10 30 30 H 0.96997 * 119.99768 * 359.97438 * 1 2 3 31 31 H 1.08000 * 126.25001 * 0.02562 * 10 9 7 32 32 H 0.97000 * 120.00322 * 359.97438 * 12 11 10 33 33 H 0.97001 * 120.00478 * 355.15522 * 17 15 13 34 34 H 1.08005 * 119.77826 * 0.02562 * 19 18 17 35 35 H 1.08001 * 120.06757 * 180.27515 * 20 19 18 36 36 H 1.08000 * 126.49195 * 0.02562 * 22 21 20 37 37 H 1.07999 * 125.03474 * 180.02562 * 23 22 21 38 38 H 1.08006 * 120.14259 * 0.02562 * 27 18 17 39 39 H 1.08003 * 125.81187 * 179.77552 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1005 1.6965 -1.2125 5 1 1.2818 2.7465 0.0006 6 1 3.1006 1.6964 1.2125 7 6 2.0079 -1.2038 -0.0005 8 1 3.0879 -1.2038 -0.0010 9 7 1.3215 -2.3929 -0.0005 10 6 1.8753 -3.6399 -0.0015 11 6 0.8573 -4.5386 -0.0017 12 7 0.9880 -5.9354 -0.0032 13 6 -0.1113 -6.7152 -0.0027 14 8 -1.2148 -6.2087 -0.0005 15 6 0.0277 -8.2006 -0.0048 16 8 1.1310 -8.7070 -0.0074 17 7 -1.0717 -8.9802 -0.0099 18 6 -0.9437 -10.3680 -0.1140 19 6 -1.8997 -11.1004 -0.8176 20 6 -1.7862 -12.4557 -0.9325 21 6 -0.7116 -13.1171 -0.3330 22 6 -0.2972 -14.5204 -0.2559 23 6 0.8352 -14.5566 0.4638 24 7 1.1802 -13.2905 0.8549 25 1 1.9608 -13.0640 1.3844 26 6 0.2543 -12.3867 0.3834 27 6 0.1280 -11.0060 0.4867 28 6 -0.3519 -3.8190 -0.0061 29 7 -0.0714 -2.5406 -0.0001 30 1 -0.4850 0.8400 0.0004 31 1 2.9305 -3.8700 -0.0021 32 1 1.8696 -6.3401 -0.0045 33 1 -1.9518 -8.5781 0.0588 34 1 -2.7333 -10.5911 -1.2784 35 1 -2.5277 -13.0162 -1.4825 36 1 -0.8061 -15.3654 -0.6957 37 1 1.3917 -15.4516 0.6995 38 1 0.8624 -10.4338 1.0342 39 1 -1.3429 -4.2485 -0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326721910.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:31 Heat of formation + Delta-G solvation = 66.179997 kcal Electronic energy + Delta-G solvation = -26869.424170 eV Core-core repulsion = 22779.152740 eV Total energy + Delta-G solvation = -4090.271429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.42695 -41.93564 -41.29256 -39.74168 -38.11834 -36.27091 -35.33674 -34.85430 -32.56537 -32.30377 -30.36844 -30.02113 -29.18851 -27.19353 -25.74344 -24.10150 -23.02503 -22.57893 -21.65033 -21.47805 -21.25818 -20.06965 -19.29899 -18.67940 -18.21742 -17.45788 -17.28227 -16.98047 -16.78131 -16.65555 -15.79721 -15.69826 -15.35449 -15.27296 -15.21777 -14.94500 -14.87005 -14.52198 -14.29333 -13.86466 -13.51611 -13.40157 -13.03505 -12.99512 -12.89119 -12.76098 -12.63917 -12.13604 -11.99747 -11.98720 -11.28612 -11.06906 -10.88426 -10.64584 -10.39273 -10.15291 -9.03719 -8.65422 -8.50572 -8.49436 -6.27557 -0.12532 0.33344 0.64759 1.17390 1.29875 1.41239 1.56969 1.70048 1.85816 2.00447 2.10458 2.25393 2.48969 2.56118 2.87706 2.92685 3.07059 3.42646 3.82964 4.05887 4.22476 4.34771 4.38173 4.40057 4.50641 4.56978 4.69465 4.92836 4.96775 4.97564 5.06167 5.17504 5.25319 5.26361 5.28580 5.52122 5.75869 5.86799 5.88264 5.95582 6.19909 6.22184 6.42329 6.63975 6.70530 6.72747 6.99892 7.39887 7.61468 8.49479 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.040693 B = 0.001838 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.920690 B =15234.425815 C =15820.321732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.005 4.005 3 Si 1.019 2.981 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.354 4.354 8 H 0.142 0.858 9 N -0.162 5.162 10 C -0.074 4.074 11 C -0.058 4.058 12 N -0.578 5.578 13 C 0.491 3.509 14 O -0.539 6.539 15 C 0.525 3.475 16 O -0.520 6.520 17 N -0.629 5.629 18 C 0.137 3.863 19 C -0.160 4.160 20 C -0.056 4.056 21 C -0.139 4.139 22 C -0.222 4.222 23 C 0.060 3.940 24 N -0.593 5.593 25 H 0.426 0.574 26 C 0.087 3.913 27 C -0.144 4.144 28 C -0.047 4.047 29 N -0.308 5.308 30 H 0.278 0.722 31 H 0.188 0.812 32 H 0.424 0.576 33 H 0.432 0.568 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.167 0.833 37 H 0.210 0.790 38 H 0.124 0.876 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 -26.466 0.513 26.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.178 1.178 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.070 4.930 10 C -0.225 4.225 11 C -0.165 4.165 12 N -0.223 5.223 13 C 0.272 3.728 14 O -0.417 6.417 15 C 0.307 3.693 16 O -0.395 6.395 17 N -0.275 5.275 18 C 0.043 3.957 19 C -0.181 4.181 20 C -0.075 4.075 21 C -0.144 4.144 22 C -0.246 4.246 23 C -0.066 4.066 24 N -0.197 5.197 25 H 0.264 0.736 26 C -0.022 4.022 27 C -0.167 4.167 28 C -0.222 4.222 29 N -0.139 5.139 30 H 0.088 0.912 31 H 0.205 0.795 32 H 0.262 0.738 33 H 0.272 0.728 34 H 0.167 0.833 35 H 0.172 0.828 36 H 0.185 0.815 37 H 0.227 0.773 38 H 0.142 0.858 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.482 -25.101 0.585 25.151 hybrid contribution 0.798 0.249 0.335 0.901 sum 2.280 -24.852 0.920 24.973 Atomic orbital electron populations 1.70366 1.08369 1.29371 1.36659 1.26884 0.96501 1.04308 0.94013 0.84647 0.77578 0.73708 0.80261 1.17769 1.20189 1.17770 1.20626 0.93064 0.80802 1.53991 0.84071 1.44846 1.03755 1.04746 1.39683 1.21999 0.98841 0.84157 1.17467 1.17269 0.93516 0.82347 1.23318 1.42024 1.09686 1.03009 1.67570 1.19912 0.84814 0.87616 0.80421 1.90670 1.26188 1.74888 1.49910 1.19824 0.84997 0.87161 0.77362 1.90735 1.26000 1.75042 1.47764 1.42965 1.10373 1.04715 1.69494 1.17440 0.97661 0.81202 0.99419 1.20672 1.00868 0.94561 1.02003 1.20385 0.96510 0.93053 0.97508 1.19728 0.96940 0.94891 1.02846 1.22042 0.99791 0.94523 1.08262 1.22539 0.97840 0.87665 0.98599 1.41974 1.24013 1.05696 1.47979 0.73585 1.18121 0.92894 0.90730 1.00416 1.20000 1.01005 0.91347 1.04397 1.24271 0.98956 0.90769 1.08216 1.78172 0.91813 1.16460 1.27478 0.91198 0.79460 0.73824 0.72846 0.83310 0.82817 0.81544 0.77334 0.85770 0.80627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.44 11.81 21.66 0.26 -46.19 16 2 C 0.00 -0.24 5.50 84.96 0.47 0.22 16 3 Si 1.02 37.87 29.55 68.60 2.03 39.90 16 4 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 5 H -0.28 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 7 C -0.35 -18.43 10.25 84.02 0.86 -17.57 16 8 H 0.14 6.35 7.83 -2.91 -0.02 6.33 16 9 N -0.16 -8.89 3.73 -189.98 -0.71 -9.60 16 10 C -0.07 -3.39 11.50 83.41 0.96 -2.43 16 11 C -0.06 -2.65 6.90 37.82 0.26 -2.39 16 12 N -0.58 -20.99 5.45 -305.42 -1.66 -22.66 16 13 C 0.49 17.25 7.85 87.19 0.68 17.94 16 14 O -0.54 -21.44 13.62 -3.48 -0.05 -21.48 16 15 C 0.52 15.57 7.71 87.19 0.67 16.24 16 16 O -0.52 -16.39 13.89 -3.42 -0.05 -16.44 16 17 N -0.63 -15.57 5.31 -304.90 -1.62 -17.19 16 18 C 0.14 3.29 6.29 38.22 0.24 3.53 16 19 C -0.16 -3.09 9.88 22.16 0.22 -2.87 16 20 C -0.06 -0.99 10.04 22.22 0.22 -0.76 16 21 C -0.14 -2.75 6.37 -20.16 -0.13 -2.88 16 22 C -0.22 -3.15 11.08 23.52 0.26 -2.89 16 23 C 0.06 0.66 11.82 82.98 0.98 1.64 16 24 N -0.59 -8.91 6.08 -187.57 -1.14 -10.05 16 25 H 0.43 4.40 8.96 -92.71 -0.83 3.57 16 26 C 0.09 1.89 7.27 39.01 0.28 2.18 16 27 C -0.14 -3.62 8.71 22.51 0.20 -3.42 16 28 C -0.05 -2.46 10.85 85.44 0.93 -1.53 16 29 N -0.31 -18.13 10.39 -56.43 -0.59 -18.72 16 30 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.19 6.86 8.06 -2.91 -0.02 6.83 16 32 H 0.42 12.85 8.29 -92.71 -0.77 12.08 16 33 H 0.43 9.32 8.29 -92.71 -0.77 8.55 16 34 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 36 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.21 0.45 8.06 -2.91 -0.02 0.43 16 38 H 0.12 3.38 6.20 -2.91 -0.02 3.36 16 39 H 0.18 9.07 5.92 -2.91 -0.02 9.05 16 Total: -1.00 -76.20 347.27 2.38 -73.81 By element: Atomic # 1 Polarization: 44.81 SS G_CDS: -1.19 Total: 43.61 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 7.11 Total: 5.00 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -5.46 Total: -124.40 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.09 Total: -37.92 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -76.20 2.38 -73.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326721910.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.993 kcal (2) G-P(sol) polarization free energy of solvation -76.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds