Wall clock time and date at job start Tue Mar 31 2020 22:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48503 * 109.47244 * 270.00576 * 3 2 1 5 5 H 1.48507 * 109.46976 * 30.00386 * 3 2 1 6 6 H 1.48490 * 109.47004 * 150.00209 * 3 2 1 7 7 C 1.38628 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99645 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.35779 * 116.99868 * 174.96683 * 9 7 2 11 11 C 1.38906 * 120.00041 * 5.34443 * 10 9 7 12 12 C 1.38008 * 120.00190 * 180.02562 * 11 10 9 13 13 C 1.38915 * 119.99788 * 359.97438 * 12 11 10 14 14 N 1.40013 * 120.00275 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99636 * 35.12788 * 14 13 12 16 16 O 1.21605 * 120.00096 * 355.49669 * 15 14 13 17 17 N 1.34780 * 119.99899 * 175.49449 * 15 14 13 18 18 C 1.39391 * 119.99963 * 179.97438 * 17 15 14 19 19 N 1.31319 * 126.32179 * 0.04434 * 18 17 15 20 20 N 1.28666 * 110.28461 * 179.97438 * 19 18 17 21 21 C 1.32090 * 109.65403 * 359.97438 * 20 19 18 22 22 C 1.40904 * 133.50180 * 180.02562 * 21 20 19 23 23 C 1.35945 * 119.24639 * 180.24867 * 22 21 20 24 24 C 1.40692 * 119.83115 * 359.48499 * 23 22 21 25 25 C 1.34846 * 120.41861 * 0.54359 * 24 23 22 26 26 N 1.36303 * 126.32376 * 179.97438 * 18 17 15 27 27 C 1.38917 * 119.99754 * 0.25167 * 13 12 11 28 28 C 1.38010 * 119.99701 * 359.51234 * 27 13 12 29 29 H 0.97000 * 120.00028 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99668 * 0.02704 * 11 10 9 31 31 H 1.07992 * 119.99966 * 179.97438 * 12 11 10 32 32 H 0.96993 * 120.00321 * 215.13081 * 14 13 12 33 33 H 0.96995 * 120.00078 * 0.02562 * 17 15 14 34 34 H 1.07999 * 120.37707 * 359.97438 * 22 21 20 35 35 H 1.07993 * 120.08858 * 179.74267 * 23 22 21 36 36 H 1.07998 * 119.78995 * 180.29029 * 24 23 22 37 37 H 1.07995 * 119.76433 * 179.73045 * 25 24 23 38 38 H 1.08002 * 120.00336 * 179.72698 * 27 13 12 39 39 H 1.08003 * 119.99557 * 180.20554 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0466 -1.4001 5 1 1.4472 2.6527 0.7002 6 1 3.5473 1.4402 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0890 -1.2005 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0704 -3.5044 -0.1072 11 6 3.4578 -3.4372 -0.0981 12 6 4.2053 -4.5921 -0.2071 13 6 3.5703 -5.8220 -0.3253 14 7 4.3286 -6.9937 -0.4364 15 6 5.4953 -7.1068 0.2288 16 8 5.9298 -6.1622 0.8594 17 7 6.1804 -8.2670 0.1951 18 6 7.3873 -8.3839 0.8827 19 7 7.9682 -7.4489 1.5988 20 7 9.0698 -7.8888 2.0975 21 6 9.2568 -9.1422 1.7251 22 6 10.2713 -10.0874 1.9756 23 6 10.1731 -11.3280 1.4284 24 6 9.0606 -11.6554 0.6318 25 6 8.0957 -10.7428 0.3983 26 7 8.1818 -9.4901 0.9369 27 6 2.1828 -5.8887 -0.3391 28 6 1.4353 -4.7341 -0.2253 29 1 -0.4850 0.8400 0.0004 30 1 3.9514 -2.4811 -0.0057 31 1 5.2840 -4.5398 -0.2004 32 1 4.0144 -7.7239 -0.9921 33 1 5.8341 -9.0204 -0.3081 34 1 11.1195 -9.8279 2.5917 35 1 10.9449 -12.0616 1.6080 36 1 8.9809 -12.6427 0.2013 37 1 7.2485 -11.0042 -0.2183 38 1 1.6890 -6.8444 -0.4355 39 1 0.3566 -4.7864 -0.2327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328686233.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:29 Heat of formation + Delta-G solvation = 117.802043 kcal Electronic energy + Delta-G solvation = -27039.253937 eV Core-core repulsion = 22951.221007 eV Total energy + Delta-G solvation = -4088.032929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.81914 -40.57174 -38.87506 -38.45719 -36.82644 -35.44311 -34.12907 -33.68340 -32.15565 -31.43576 -30.19580 -29.25142 -27.76453 -25.30839 -24.67282 -23.77175 -23.64254 -22.28668 -21.43711 -20.55699 -19.42268 -18.68911 -17.89285 -17.64265 -17.27426 -17.10585 -16.82667 -16.21785 -15.71910 -15.36879 -15.27664 -14.64484 -14.46442 -14.15518 -13.61846 -13.56188 -13.09237 -12.98682 -12.86539 -12.63440 -12.55260 -12.15112 -11.79986 -11.71614 -11.56323 -11.52420 -11.01444 -10.82038 -10.78447 -10.71452 -10.40514 -10.08451 -9.74578 -9.69048 -9.19918 -8.69548 -8.19911 -8.09425 -6.95063 -6.42343 -3.99728 0.17712 0.72613 1.26666 2.10306 2.22560 2.39854 2.49668 2.94472 3.15419 3.18651 3.23490 3.24554 3.62217 3.78803 4.00889 4.01311 4.23407 4.36749 4.46563 4.57394 4.90684 5.03684 5.11954 5.25957 5.28657 5.39898 5.60438 5.65788 5.71704 5.73794 5.95614 6.06300 6.13497 6.25206 6.45688 6.50494 6.71293 6.91991 7.04213 7.09794 7.33709 7.45412 7.71950 7.77275 8.03036 8.33350 8.46295 9.03653 9.72148 10.75429 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.002017 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.789341 B =13881.032802 C =14837.472718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.148 3.852 11 C -0.218 4.218 12 C -0.061 4.061 13 C 0.045 3.955 14 N -0.662 5.662 15 C 0.699 3.301 16 O -0.510 6.510 17 N -0.645 5.645 18 C 0.400 3.600 19 N -0.221 5.221 20 N -0.269 5.269 21 C 0.185 3.815 22 C -0.065 4.065 23 C -0.099 4.099 24 C -0.134 4.134 25 C 0.058 3.942 26 N -0.410 5.410 27 C -0.090 4.090 28 C -0.178 4.178 29 H 0.270 0.730 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.399 0.601 33 H 0.411 0.589 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.115 0.885 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.154 -27.981 -2.620 32.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.466 4.466 8 H 0.111 0.889 9 O -0.079 6.079 10 C 0.093 3.907 11 C -0.238 4.238 12 C -0.081 4.081 13 C -0.047 4.047 14 N -0.310 5.310 15 C 0.398 3.602 16 O -0.378 6.378 17 N -0.302 5.302 18 C 0.048 3.952 19 N -0.066 5.066 20 N -0.114 5.114 21 C -0.065 4.065 22 C -0.086 4.086 23 C -0.124 4.124 24 C -0.156 4.156 25 C -0.063 4.063 26 N -0.098 5.098 27 C -0.111 4.111 28 C -0.198 4.198 29 H 0.080 0.920 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.233 0.767 33 H 0.247 0.753 34 H 0.176 0.824 35 H 0.165 0.835 36 H 0.172 0.828 37 H 0.182 0.818 38 H 0.133 0.867 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.178 -25.264 -1.327 30.030 hybrid contribution -0.175 -1.435 -1.261 1.918 sum 16.003 -26.699 -2.588 31.235 Atomic orbital electron populations 1.70050 1.05939 1.27663 1.46121 1.25289 0.95858 0.98850 0.96527 0.85709 0.79048 0.80002 0.78718 1.19879 1.20278 1.19058 1.21355 0.91913 0.80770 1.52557 0.88926 1.83970 1.34308 1.11442 1.78153 1.19425 0.90288 0.88152 0.92797 1.21115 0.93506 0.98838 1.10381 1.20899 1.00068 0.90232 0.96896 1.16971 0.89339 0.84061 1.14346 1.42085 1.20717 1.18879 1.49366 1.15655 0.81303 0.81979 0.81257 1.91126 1.67115 1.35627 1.43915 1.41533 1.18823 1.16472 1.53339 1.20557 0.89469 0.83682 1.01539 1.75113 1.02119 1.20146 1.09221 1.75010 1.10586 1.04923 1.20896 1.22105 0.90857 0.95561 0.98002 1.20309 0.96757 0.90832 1.00721 1.21154 0.98260 0.96406 0.96585 1.20901 0.93967 0.99872 1.00853 1.21600 1.02117 0.82382 1.00188 1.43504 1.18801 1.10394 1.37074 1.20289 0.91124 0.97507 1.02138 1.19963 0.99461 0.89784 1.10625 0.92047 0.85070 0.85411 0.76686 0.75337 0.82364 0.83543 0.82754 0.81843 0.86728 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 7 C -0.39 -11.06 9.48 30.88 0.29 -10.77 16 8 H 0.09 2.46 5.20 -52.48 -0.27 2.19 16 9 O -0.18 -5.04 9.75 0.01 0.00 -5.04 16 10 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 11 C -0.22 -5.00 9.16 -39.42 -0.36 -5.37 16 12 C -0.06 -1.25 8.69 -39.41 -0.34 -1.59 16 13 C 0.05 0.79 6.30 -83.62 -0.53 0.26 16 14 N -0.66 -8.60 5.35 -14.18 -0.08 -8.68 16 15 C 0.70 10.40 8.37 -86.92 -0.73 9.68 16 16 O -0.51 -10.30 12.50 5.27 0.07 -10.23 16 17 N -0.64 -6.90 5.42 -16.70 -0.09 -6.99 16 18 C 0.40 5.31 8.72 -317.77 -2.77 2.54 16 19 N -0.22 -3.88 10.43 30.47 0.32 -3.56 16 20 N -0.27 -4.27 12.29 31.20 0.38 -3.88 16 21 C 0.19 2.12 7.93 -155.81 -1.24 0.89 16 22 C -0.06 -0.45 10.11 -39.40 -0.40 -0.84 16 23 C -0.10 -0.39 10.06 -39.48 -0.40 -0.79 16 24 C -0.13 -0.44 9.98 -39.86 -0.40 -0.83 16 25 C 0.06 0.30 11.00 -16.61 -0.18 0.11 16 26 N -0.41 -4.07 2.98 -63.01 -0.19 -4.26 16 27 C -0.09 -1.53 9.96 -39.41 -0.39 -1.92 16 28 C -0.18 -3.67 9.98 -39.42 -0.39 -4.06 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.13 3.05 5.63 -52.49 -0.30 2.75 16 31 H 0.13 2.67 6.22 -52.49 -0.33 2.34 16 32 H 0.40 3.28 8.84 -40.82 -0.36 2.91 16 33 H 0.41 2.23 8.84 -40.82 -0.36 1.87 16 34 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.15 0.12 8.06 -52.49 -0.42 -0.30 16 36 H 0.15 -0.01 8.06 -52.49 -0.42 -0.43 16 37 H 0.16 0.22 8.06 -52.49 -0.42 -0.20 16 38 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.12 2.38 8.06 -52.48 -0.42 1.95 16 LS Contribution 346.54 15.07 5.22 5.22 Total: -1.00 -39.55 346.54 -10.11 -49.65 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.29 Total: 4.86 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -8.19 Total: -8.37 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 1.11 Total: -52.09 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.07 Total: -15.27 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -39.55 -10.11 -49.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328686233.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.456 kcal (2) G-P(sol) polarization free energy of solvation -39.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds