Wall clock time and date at job start Tue Mar 31 2020 22:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48503 * 109.47244 * 270.00576 * 3 2 1 5 5 H 1.48507 * 109.46976 * 30.00386 * 3 2 1 6 6 H 1.48490 * 109.47004 * 150.00209 * 3 2 1 7 7 C 1.38628 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99645 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.35779 * 116.99868 * 174.96683 * 9 7 2 11 11 C 1.38906 * 120.00041 * 5.34443 * 10 9 7 12 12 C 1.38008 * 120.00190 * 180.02562 * 11 10 9 13 13 C 1.38915 * 119.99788 * 359.97438 * 12 11 10 14 14 N 1.40013 * 120.00275 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99636 * 35.12788 * 14 13 12 16 16 O 1.21605 * 120.00096 * 355.49669 * 15 14 13 17 17 N 1.34780 * 119.99899 * 175.49449 * 15 14 13 18 18 C 1.39391 * 119.99963 * 179.97438 * 17 15 14 19 19 N 1.31319 * 126.32179 * 0.04434 * 18 17 15 20 20 N 1.28666 * 110.28461 * 179.97438 * 19 18 17 21 21 C 1.32090 * 109.65403 * 359.97438 * 20 19 18 22 22 C 1.40904 * 133.50180 * 180.02562 * 21 20 19 23 23 C 1.35945 * 119.24639 * 180.24867 * 22 21 20 24 24 C 1.40692 * 119.83115 * 359.48499 * 23 22 21 25 25 C 1.34846 * 120.41861 * 0.54359 * 24 23 22 26 26 N 1.36303 * 126.32376 * 179.97438 * 18 17 15 27 27 C 1.38917 * 119.99754 * 0.25167 * 13 12 11 28 28 C 1.38010 * 119.99701 * 359.51234 * 27 13 12 29 29 H 0.97000 * 120.00028 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99668 * 0.02704 * 11 10 9 31 31 H 1.07992 * 119.99966 * 179.97438 * 12 11 10 32 32 H 0.96993 * 120.00321 * 215.13081 * 14 13 12 33 33 H 0.96995 * 120.00078 * 0.02562 * 17 15 14 34 34 H 1.07999 * 120.37707 * 359.97438 * 22 21 20 35 35 H 1.07993 * 120.08858 * 179.74267 * 23 22 21 36 36 H 1.07998 * 119.78995 * 180.29029 * 24 23 22 37 37 H 1.07995 * 119.76433 * 179.73045 * 25 24 23 38 38 H 1.08002 * 120.00336 * 179.72698 * 27 13 12 39 39 H 1.08003 * 119.99557 * 180.20554 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0466 -1.4001 5 1 1.4472 2.6527 0.7002 6 1 3.5473 1.4402 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0890 -1.2005 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0704 -3.5044 -0.1072 11 6 3.4578 -3.4372 -0.0981 12 6 4.2053 -4.5921 -0.2071 13 6 3.5703 -5.8220 -0.3253 14 7 4.3286 -6.9937 -0.4364 15 6 5.4953 -7.1068 0.2288 16 8 5.9298 -6.1622 0.8594 17 7 6.1804 -8.2670 0.1951 18 6 7.3873 -8.3839 0.8827 19 7 7.9682 -7.4489 1.5988 20 7 9.0698 -7.8888 2.0975 21 6 9.2568 -9.1422 1.7251 22 6 10.2713 -10.0874 1.9756 23 6 10.1731 -11.3280 1.4284 24 6 9.0606 -11.6554 0.6318 25 6 8.0957 -10.7428 0.3983 26 7 8.1818 -9.4901 0.9369 27 6 2.1828 -5.8887 -0.3391 28 6 1.4353 -4.7341 -0.2253 29 1 -0.4850 0.8400 0.0004 30 1 3.9514 -2.4811 -0.0057 31 1 5.2840 -4.5398 -0.2004 32 1 4.0144 -7.7239 -0.9921 33 1 5.8341 -9.0204 -0.3081 34 1 11.1195 -9.8279 2.5917 35 1 10.9449 -12.0616 1.6080 36 1 8.9809 -12.6427 0.2013 37 1 7.2485 -11.0042 -0.2183 38 1 1.6890 -6.8444 -0.4355 39 1 0.3566 -4.7864 -0.2327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328686233.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:28 Heat of formation + Delta-G solvation = 90.859433 kcal Electronic energy + Delta-G solvation = -27040.422256 eV Core-core repulsion = 22951.221007 eV Total energy + Delta-G solvation = -4089.201249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.61383 -41.84040 -40.54638 -39.11966 -38.41193 -36.53025 -35.54301 -34.48147 -34.11898 -32.04666 -31.85638 -30.22649 -29.17451 -27.29504 -25.30528 -24.75915 -24.43405 -23.84914 -22.81140 -21.76388 -20.34470 -20.10560 -19.47212 -18.78279 -18.41562 -17.98099 -17.87424 -17.29968 -16.67053 -16.30827 -16.19064 -16.15105 -15.76095 -15.55911 -15.45729 -15.26767 -14.65484 -14.20391 -13.73064 -13.58486 -13.44277 -13.35244 -13.24537 -13.14133 -12.87323 -12.68888 -12.49953 -12.43389 -12.14300 -11.70560 -11.52079 -11.48902 -11.38688 -10.98633 -10.58477 -10.40040 -9.83555 -8.88608 -8.59612 -8.47456 -6.13797 -0.26674 0.06228 0.33112 0.53588 0.62373 1.34450 1.41527 1.49188 1.51135 1.64610 2.07275 2.17693 2.39386 2.75181 2.81899 3.13815 3.15785 3.47473 3.51826 3.70161 3.89478 4.06255 4.12603 4.13078 4.24379 4.48146 4.62866 4.63820 4.68119 4.79309 5.01390 5.04323 5.06466 5.11482 5.21777 5.33335 5.36218 5.49440 5.56064 5.68986 5.70887 5.87381 6.02423 6.14924 6.68848 6.97468 7.25411 7.53482 7.76293 8.75011 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.002017 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.789341 B =13881.032802 C =14837.472718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.019 4.019 3 Si 1.014 2.986 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.413 4.413 8 H 0.095 0.905 9 O -0.226 6.226 10 C 0.108 3.892 11 C -0.230 4.230 12 C -0.075 4.075 13 C 0.077 3.923 14 N -0.642 5.642 15 C 0.701 3.299 16 O -0.567 6.567 17 N -0.616 5.616 18 C 0.381 3.619 19 N -0.287 5.287 20 N -0.340 5.340 21 C 0.191 3.809 22 C -0.107 4.107 23 C -0.060 4.060 24 C -0.121 4.121 25 C 0.040 3.960 26 N -0.403 5.403 27 C -0.069 4.069 28 C -0.178 4.178 29 H 0.273 0.727 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.429 0.571 33 H 0.438 0.562 34 H 0.169 0.831 35 H 0.189 0.811 36 H 0.204 0.796 37 H 0.206 0.794 38 H 0.175 0.825 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.612 -33.917 -4.138 38.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.217 4.217 3 Si 0.834 3.166 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.112 0.888 9 O -0.132 6.132 10 C 0.057 3.943 11 C -0.250 4.250 12 C -0.096 4.096 13 C -0.016 4.016 14 N -0.293 5.293 15 C 0.400 3.600 16 O -0.439 6.439 17 N -0.276 5.276 18 C 0.027 3.973 19 N -0.131 5.131 20 N -0.185 5.185 21 C -0.060 4.060 22 C -0.128 4.128 23 C -0.084 4.084 24 C -0.142 4.142 25 C -0.080 4.080 26 N -0.089 5.089 27 C -0.088 4.088 28 C -0.198 4.198 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.269 0.731 33 H 0.280 0.720 34 H 0.187 0.813 35 H 0.207 0.793 36 H 0.221 0.779 37 H 0.222 0.778 38 H 0.192 0.808 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 17.673 -31.353 -2.890 36.107 hybrid contribution -0.337 -0.286 -0.840 0.949 sum 17.335 -31.639 -3.730 36.269 Atomic orbital electron populations 1.70171 1.07707 1.28767 1.48733 1.26487 0.96885 1.02436 0.95910 0.84649 0.77673 0.74964 0.79334 1.18565 1.19202 1.18476 1.21737 0.92320 0.81659 1.53219 0.88773 1.83929 1.35519 1.12385 1.81359 1.19970 0.90931 0.88555 0.94807 1.21069 0.93446 0.99190 1.11308 1.20924 0.99707 0.91047 0.97897 1.17045 0.90115 0.84439 1.10049 1.41734 1.19757 1.18251 1.49555 1.15762 0.81348 0.82288 0.80613 1.91120 1.68495 1.38121 1.46148 1.40916 1.17735 1.16066 1.52864 1.20405 0.90276 0.84499 1.02146 1.74867 1.03620 1.23218 1.11369 1.74839 1.11482 1.07831 1.24327 1.22779 0.91669 0.94937 0.96662 1.20659 0.96889 0.91608 1.03645 1.21806 0.98574 0.95223 0.92837 1.21613 0.92300 1.01203 0.99049 1.22619 1.04418 0.80475 1.00477 1.43567 1.17483 1.11153 1.36711 1.20752 0.90422 0.98582 0.99091 1.20341 1.00491 0.89417 1.09535 0.91764 0.86935 0.86157 0.73077 0.72044 0.81314 0.79336 0.77920 0.77751 0.80795 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.97 13.67 21.61 0.30 -56.67 16 2 C -0.02 -1.13 5.49 84.82 0.47 -0.67 16 3 Si 1.01 45.05 29.55 68.60 2.03 47.08 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.41 -25.06 9.48 67.91 0.64 -24.42 16 8 H 0.09 5.42 5.20 -2.91 -0.02 5.41 16 9 O -0.23 -13.82 9.75 -22.87 -0.22 -14.04 16 10 C 0.11 5.52 6.65 22.59 0.15 5.67 16 11 C -0.23 -11.17 9.16 22.38 0.20 -10.97 16 12 C -0.08 -3.16 8.69 22.38 0.19 -2.97 16 13 C 0.08 2.54 6.30 38.16 0.24 2.78 16 14 N -0.64 -14.55 5.35 -317.03 -1.69 -16.25 16 15 C 0.70 19.95 8.37 179.05 1.50 21.44 16 16 O -0.57 -23.58 12.50 -4.05 -0.05 -23.63 16 17 N -0.62 -11.91 5.42 -324.99 -1.76 -13.68 16 18 C 0.38 10.00 8.72 259.72 2.26 12.27 16 19 N -0.29 -10.72 10.43 -57.51 -0.60 -11.32 16 20 N -0.34 -11.60 12.29 -55.19 -0.68 -12.28 16 21 C 0.19 4.35 7.93 134.01 1.06 5.41 16 22 C -0.11 -1.25 10.11 22.39 0.23 -1.02 16 23 C -0.06 -0.15 10.06 22.34 0.22 0.08 16 24 C -0.12 -0.01 9.98 22.09 0.22 0.21 16 25 C 0.04 0.21 11.00 83.17 0.92 1.12 16 26 N -0.40 -7.26 2.98 -353.28 -1.05 -8.31 16 27 C -0.07 -2.08 9.96 22.38 0.22 -1.86 16 28 C -0.18 -7.22 9.98 22.37 0.22 -6.99 16 29 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.11 5.73 5.63 -2.91 -0.02 5.72 16 31 H 0.12 5.26 6.22 -2.91 -0.02 5.25 16 32 H 0.43 4.73 8.84 -92.71 -0.82 3.91 16 33 H 0.44 2.92 8.84 -92.71 -0.82 2.10 16 34 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.19 -1.03 8.06 -2.91 -0.02 -1.05 16 36 H 0.20 -1.79 8.06 -2.91 -0.02 -1.82 16 37 H 0.21 -0.77 8.06 -2.91 -0.02 -0.79 16 38 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 39 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -101.54 346.54 4.54 -97.00 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -0.48 Total: 12.01 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 8.76 Total: 0.08 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -5.49 Total: -118.50 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -0.27 Total: -37.67 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -101.54 4.54 -97.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328686233.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.858 kcal (2) G-P(sol) polarization free energy of solvation -101.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds