Wall clock time and date at job start Tue Mar 31 2020 22:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50710 * 109.47120 * 2 1 4 4 O 1.21277 * 119.99692 * 240.00243 * 3 2 1 5 5 N 1.34778 * 119.99779 * 59.99905 * 3 2 1 6 6 S 1.65600 * 119.99456 * 180.02562 * 5 3 2 7 7 O 1.42101 * 104.27882 * 308.92580 * 6 5 3 8 8 O 1.42102 * 104.27187 * 181.06955 * 6 5 3 9 9 C 1.81399 * 104.45301 * 64.99917 * 6 5 3 10 10 C 1.52996 * 109.47218 * 179.97438 * 9 6 5 11 11 C 1.50696 * 109.47142 * 180.02562 * 10 9 6 12 12 H 1.07998 * 120.00056 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00096 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99899 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00143 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47205 * 59.99647 * 15 13 11 17 17 H 1.48494 * 109.47106 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46903 * 299.99491 * 15 13 11 19 19 C 1.52995 * 109.46879 * 119.99580 * 2 1 3 20 20 C 1.53003 * 109.46879 * 179.97438 * 19 2 1 21 21 C 1.53006 * 109.47334 * 300.00089 * 20 19 2 22 22 F 1.39894 * 109.47088 * 300.00141 * 21 20 19 23 23 F 1.39892 * 109.47060 * 179.97438 * 21 20 19 24 24 C 1.53004 * 109.46670 * 60.00019 * 21 20 19 25 25 C 1.52996 * 109.47003 * 240.00087 * 2 1 3 26 26 H 1.09001 * 109.47025 * 59.99947 * 1 2 3 27 27 H 1.08994 * 109.46914 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47073 * 300.00379 * 1 2 3 29 29 H 0.97002 * 120.00099 * 359.97438 * 5 3 2 30 30 H 1.09001 * 109.46838 * 300.00058 * 9 6 5 31 31 H 1.08998 * 109.46934 * 59.99858 * 9 6 5 32 32 H 1.09004 * 109.47227 * 300.00383 * 10 9 6 33 33 H 1.09001 * 109.46834 * 59.99744 * 10 9 6 34 34 H 0.97002 * 120.00322 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.47799 * 299.99828 * 19 2 1 36 36 H 1.09003 * 109.46946 * 60.00618 * 19 2 1 37 37 H 1.09001 * 109.47025 * 180.02562 * 20 19 2 38 38 H 1.08995 * 109.47636 * 60.00503 * 20 19 2 39 39 H 1.09001 * 109.46709 * 179.97438 * 24 21 20 40 40 H 1.09004 * 109.46633 * 60.00335 * 24 21 20 41 41 H 1.08994 * 109.47138 * 299.99681 * 25 2 1 42 42 H 1.08992 * 109.47616 * 60.00601 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.7296 1.8175 -0.9096 5 7 1.7068 2.2508 1.0108 6 16 2.2583 3.8122 1.0104 7 8 3.6577 3.6896 0.7964 8 8 1.7471 4.3646 2.2158 9 6 1.4587 4.5744 -0.4284 10 6 1.8933 6.0373 -0.5380 11 6 1.2286 6.6706 -1.7329 12 1 0.5630 6.0880 -2.3525 13 6 1.4709 7.9937 -2.0359 14 7 2.2818 8.7031 -1.2818 15 14 0.6474 8.7786 -3.5175 16 1 -0.8274 8.7115 -3.3575 17 1 1.0692 10.1984 -3.6239 18 1 1.0455 8.0500 -4.7488 19 6 2.0400 -0.7211 1.2493 20 6 3.5700 -0.7217 1.2489 21 6 4.0795 -1.4434 -0.0003 22 9 3.6127 -2.7622 0.0001 23 9 5.4784 -1.4434 -0.0008 24 6 3.5695 -0.7221 -1.2495 25 6 2.0400 -0.7212 -1.2492 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.1488 1.9336 1.7382 30 1 1.7507 4.0395 -1.3321 31 1 0.3762 4.5253 -0.3109 32 1 1.6010 6.5719 0.3658 33 1 2.9759 6.0867 -0.6553 34 1 2.4521 9.6340 -1.4946 35 1 1.6767 -0.2073 2.1393 36 1 1.6767 -1.7488 1.2492 37 1 3.9333 -1.2359 2.1387 38 1 3.9338 0.3057 1.2487 39 1 3.9329 -1.2360 -2.1395 40 1 3.9333 0.3054 -1.2497 41 1 1.6767 -1.7488 -1.2492 42 1 1.6768 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331694498.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:19 Heat of formation + Delta-G solvation = -235.442333 kcal Electronic energy + Delta-G solvation = -29202.246184 eV Core-core repulsion = 24751.357443 eV Total energy + Delta-G solvation = -4450.888741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.13502 -47.11309 -41.21510 -37.49239 -36.69961 -35.69943 -34.81226 -33.94485 -32.34995 -31.42052 -31.22828 -26.54804 -25.68465 -24.33436 -23.66214 -21.79057 -21.52193 -20.28102 -19.45148 -17.92877 -17.57669 -17.51605 -16.60560 -16.47306 -16.40815 -16.02604 -15.34175 -15.19035 -14.85610 -14.72361 -14.56472 -14.16216 -13.87092 -13.58824 -13.48526 -13.28094 -13.16682 -12.85244 -12.68574 -12.58301 -12.54341 -12.31952 -11.96294 -11.86644 -11.82490 -11.78599 -11.69143 -11.39888 -11.18633 -11.09148 -11.03952 -10.87894 -10.45730 -10.44580 -10.41787 -10.02353 -9.74663 -9.23444 -8.52467 -6.14901 -4.20804 0.41602 1.91793 2.62409 3.26243 3.31087 3.32872 3.53305 3.75237 3.78851 3.96065 4.02177 4.16288 4.26978 4.34862 4.42005 4.57390 4.63104 4.67934 4.84356 4.92767 5.10379 5.18184 5.20328 5.26035 5.33786 5.34983 5.45604 5.52955 5.56937 5.64970 5.66753 5.70435 5.73094 5.98443 6.39360 6.52304 7.23780 7.30395 7.33196 7.77522 8.13040 8.81826 9.43938 10.96145 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018608 B = 0.003156 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.399602 B = 8870.849588 C = 9104.355635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C 0.542 3.458 4 O -0.482 6.482 5 N -1.057 6.057 6 S 2.562 3.438 7 O -0.937 6.937 8 O -0.954 6.954 9 C -0.574 4.574 10 C 0.030 3.970 11 C -0.521 4.521 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.890 5.890 15 Si 0.902 3.098 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.108 4.108 20 C -0.170 4.170 21 C 0.289 3.711 22 F -0.202 7.202 23 F -0.200 7.200 24 C -0.176 4.176 25 C -0.094 4.094 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.428 0.572 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.266 0.734 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 -23.026 4.641 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.091 4.091 3 C 0.328 3.672 4 O -0.353 6.353 5 N -0.818 5.818 6 S 2.662 3.338 7 O -0.927 6.927 8 O -0.944 6.944 9 C -0.709 4.709 10 C -0.009 4.009 11 C -0.560 4.560 12 H 0.080 0.920 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.729 3.271 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.146 4.146 20 C -0.208 4.208 21 C 0.253 3.747 22 F -0.183 7.183 23 F -0.181 7.181 24 C -0.214 4.214 25 C -0.132 4.132 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.263 0.737 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.141 0.859 41 H 0.102 0.898 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.957 -22.283 4.664 22.957 hybrid contribution -0.940 0.148 -0.780 1.230 sum -3.896 -22.135 3.883 22.808 Atomic orbital electron populations 1.21885 0.90914 1.03873 1.03511 1.21054 0.98315 0.91359 0.98379 1.20517 0.78135 0.88232 0.80338 1.90840 1.33835 1.76621 1.34006 1.55474 1.62144 1.32746 1.31444 1.06842 0.76079 0.72852 0.78032 1.93601 1.28839 1.83446 1.86804 1.93595 1.81382 1.75718 1.43713 1.30332 1.11958 1.12194 1.16413 1.18988 0.98207 0.83976 0.99768 1.20924 1.28278 0.95825 1.10998 0.92012 1.25061 0.95135 0.97198 0.97003 1.69940 1.35410 1.09003 1.38441 0.86505 0.79695 0.78301 0.82635 1.20063 1.21034 1.20007 1.21637 0.93746 1.02512 0.96670 1.22635 0.97560 1.03354 0.97255 1.21103 0.75378 0.79272 0.98921 1.92971 1.88373 1.39271 1.97723 1.93015 1.30819 1.96596 1.97687 1.22851 0.97658 1.04887 0.95992 1.21408 0.93885 1.01097 0.96837 0.91016 0.90465 0.91386 0.73705 0.85030 0.86029 0.94786 0.94587 0.92407 0.89591 0.88904 0.88667 0.88409 0.89194 0.85887 0.89811 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.37 37.16 0.31 -0.47 16 2 C -0.09 -0.68 0.62 -155.66 -0.10 -0.78 16 3 C 0.54 6.39 4.71 -10.98 -0.05 6.34 16 4 O -0.48 -7.40 11.76 -11.58 -0.14 -7.54 16 5 N -1.06 -12.17 5.39 31.22 0.17 -12.00 16 6 S 2.56 44.31 5.11 -107.50 -0.55 43.76 16 7 O -0.94 -19.58 17.04 -64.79 -1.10 -20.68 16 8 O -0.95 -18.18 18.08 -57.54 -1.04 -19.22 16 9 C -0.57 -10.95 5.82 37.16 0.22 -10.74 16 10 C 0.03 0.76 4.98 -27.89 -0.14 0.62 16 11 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 15 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.11 -0.72 4.51 -26.73 -0.12 -0.84 16 20 C -0.17 -1.55 5.23 -26.73 -0.14 -1.69 16 21 C 0.29 3.08 2.10 -26.73 -0.06 3.03 16 22 F -0.20 -2.12 16.02 2.25 0.04 -2.08 16 23 F -0.20 -2.59 17.06 2.25 0.04 -2.55 16 24 C -0.18 -1.83 5.16 -26.75 -0.14 -1.97 16 25 C -0.09 -0.77 4.25 -26.76 -0.11 -0.89 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.28 7.56 -51.93 -0.39 -0.11 16 29 H 0.43 3.18 7.62 -34.48 -0.26 2.91 16 30 H 0.13 2.44 7.19 -51.92 -0.37 2.07 16 31 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.09 0.41 7.56 -51.93 -0.39 0.01 16 36 H 0.09 0.49 7.80 -51.93 -0.41 0.08 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.06 7.22 -51.93 -0.37 0.69 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.12 1.58 5.51 -51.93 -0.29 1.29 16 41 H 0.08 0.55 7.80 -51.93 -0.41 0.14 16 42 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -35.99 354.35 -8.09 -44.07 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.81 Total: 0.87 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -0.74 Total: -20.46 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.90 Total: -37.59 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -2.28 Total: -47.44 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.07 Total: -4.63 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 44.31 SS G_CDS: -0.55 Total: 43.76 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.99 -8.09 -44.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331694498.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.371 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds