Wall clock time and date at job start Tue Mar 31 2020 22:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50710 * 109.47120 * 2 1 4 4 O 1.21277 * 119.99692 * 240.00243 * 3 2 1 5 5 N 1.34778 * 119.99779 * 59.99905 * 3 2 1 6 6 S 1.65600 * 119.99456 * 180.02562 * 5 3 2 7 7 O 1.42101 * 104.27882 * 308.92580 * 6 5 3 8 8 O 1.42102 * 104.27187 * 181.06955 * 6 5 3 9 9 C 1.81399 * 104.45301 * 64.99917 * 6 5 3 10 10 C 1.52996 * 109.47218 * 179.97438 * 9 6 5 11 11 C 1.50696 * 109.47142 * 180.02562 * 10 9 6 12 12 H 1.07998 * 120.00056 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00096 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99899 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00143 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47205 * 59.99647 * 15 13 11 17 17 H 1.48494 * 109.47106 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46903 * 299.99491 * 15 13 11 19 19 C 1.52995 * 109.46879 * 119.99580 * 2 1 3 20 20 C 1.53003 * 109.46879 * 179.97438 * 19 2 1 21 21 C 1.53006 * 109.47334 * 300.00089 * 20 19 2 22 22 F 1.39894 * 109.47088 * 300.00141 * 21 20 19 23 23 F 1.39892 * 109.47060 * 179.97438 * 21 20 19 24 24 C 1.53004 * 109.46670 * 60.00019 * 21 20 19 25 25 C 1.52996 * 109.47003 * 240.00087 * 2 1 3 26 26 H 1.09001 * 109.47025 * 59.99947 * 1 2 3 27 27 H 1.08994 * 109.46914 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47073 * 300.00379 * 1 2 3 29 29 H 0.97002 * 120.00099 * 359.97438 * 5 3 2 30 30 H 1.09001 * 109.46838 * 300.00058 * 9 6 5 31 31 H 1.08998 * 109.46934 * 59.99858 * 9 6 5 32 32 H 1.09004 * 109.47227 * 300.00383 * 10 9 6 33 33 H 1.09001 * 109.46834 * 59.99744 * 10 9 6 34 34 H 0.97002 * 120.00322 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.47799 * 299.99828 * 19 2 1 36 36 H 1.09003 * 109.46946 * 60.00618 * 19 2 1 37 37 H 1.09001 * 109.47025 * 180.02562 * 20 19 2 38 38 H 1.08995 * 109.47636 * 60.00503 * 20 19 2 39 39 H 1.09001 * 109.46709 * 179.97438 * 24 21 20 40 40 H 1.09004 * 109.46633 * 60.00335 * 24 21 20 41 41 H 1.08994 * 109.47138 * 299.99681 * 25 2 1 42 42 H 1.08992 * 109.47616 * 60.00601 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.7296 1.8175 -0.9096 5 7 1.7068 2.2508 1.0108 6 16 2.2583 3.8122 1.0104 7 8 3.6577 3.6896 0.7964 8 8 1.7471 4.3646 2.2158 9 6 1.4587 4.5744 -0.4284 10 6 1.8933 6.0373 -0.5380 11 6 1.2286 6.6706 -1.7329 12 1 0.5630 6.0880 -2.3525 13 6 1.4709 7.9937 -2.0359 14 7 2.2818 8.7031 -1.2818 15 14 0.6474 8.7786 -3.5175 16 1 -0.8274 8.7115 -3.3575 17 1 1.0692 10.1984 -3.6239 18 1 1.0455 8.0500 -4.7488 19 6 2.0400 -0.7211 1.2493 20 6 3.5700 -0.7217 1.2489 21 6 4.0795 -1.4434 -0.0003 22 9 3.6127 -2.7622 0.0001 23 9 5.4784 -1.4434 -0.0008 24 6 3.5695 -0.7221 -1.2495 25 6 2.0400 -0.7212 -1.2492 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.1488 1.9336 1.7382 30 1 1.7507 4.0395 -1.3321 31 1 0.3762 4.5253 -0.3109 32 1 1.6010 6.5719 0.3658 33 1 2.9759 6.0867 -0.6553 34 1 2.4521 9.6340 -1.4946 35 1 1.6767 -0.2073 2.1393 36 1 1.6767 -1.7488 1.2492 37 1 3.9333 -1.2359 2.1387 38 1 3.9338 0.3057 1.2487 39 1 3.9329 -1.2360 -2.1395 40 1 3.9333 0.3054 -1.2497 41 1 1.6767 -1.7488 -1.2492 42 1 1.6768 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331694498.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:19 Heat of formation + Delta-G solvation = -261.548364 kcal Electronic energy + Delta-G solvation = -29203.378227 eV Core-core repulsion = 24751.357443 eV Total energy + Delta-G solvation = -4452.020784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.00253 -47.99650 -42.10435 -38.52388 -38.01183 -37.24533 -35.99686 -35.81996 -33.19114 -33.01233 -32.11246 -27.66923 -27.07883 -25.25609 -24.32970 -23.62506 -22.36994 -21.18714 -20.74263 -19.32737 -18.61781 -18.42864 -18.29232 -17.41635 -17.33074 -17.27075 -16.64212 -16.56040 -16.48018 -15.62864 -15.51233 -15.24277 -14.96223 -14.69003 -14.48662 -14.42701 -14.07152 -13.82164 -13.78047 -13.70249 -13.41407 -13.36950 -13.32533 -13.26116 -13.18809 -12.93437 -12.85516 -12.61214 -12.48224 -12.29838 -12.24662 -12.08397 -11.91152 -11.80133 -11.72516 -11.13865 -11.11527 -10.92837 -10.65585 -8.27965 -6.42306 -1.02460 0.96126 1.40089 1.40783 1.43877 1.52053 2.36336 2.54585 2.75203 2.93552 3.05020 3.05587 3.14582 3.30748 3.41707 3.60026 3.71750 3.90265 3.97055 4.00907 4.03864 4.10370 4.28206 4.57002 4.58907 4.67483 4.69953 4.78550 4.82386 4.92709 5.01748 5.03026 5.12807 5.20759 5.21993 5.22098 5.38002 5.64536 5.66239 6.02465 6.41589 6.70247 7.27860 8.84266 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018608 B = 0.003156 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.399602 B = 8870.849588 C = 9104.355635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C 0.536 3.464 4 O -0.520 6.520 5 N -1.035 6.035 6 S 2.595 3.405 7 O -0.978 6.978 8 O -0.971 6.971 9 C -0.578 4.578 10 C 0.022 3.978 11 C -0.541 4.541 12 H 0.075 0.925 13 C -0.002 4.002 14 N -0.933 5.933 15 Si 0.975 3.025 16 H -0.259 1.259 17 H -0.283 1.283 18 H -0.266 1.266 19 C -0.107 4.107 20 C -0.174 4.174 21 C 0.284 3.716 22 F -0.198 7.198 23 F -0.220 7.220 24 C -0.180 4.180 25 C -0.094 4.094 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.449 0.551 30 H 0.135 0.865 31 H 0.153 0.847 32 H 0.014 0.986 33 H 0.003 0.997 34 H 0.268 0.732 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.050 -25.329 4.638 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.082 4.082 3 C 0.325 3.675 4 O -0.393 6.393 5 N -0.802 5.802 6 S 2.694 3.306 7 O -0.968 6.968 8 O -0.961 6.961 9 C -0.711 4.711 10 C -0.017 4.017 11 C -0.580 4.580 12 H 0.093 0.907 13 C -0.201 4.201 14 N -0.573 5.573 15 Si 0.798 3.202 16 H -0.184 1.184 17 H -0.209 1.209 18 H -0.191 1.191 19 C -0.144 4.144 20 C -0.212 4.212 21 C 0.248 3.752 22 F -0.179 7.179 23 F -0.201 7.201 24 C -0.218 4.218 25 C -0.131 4.131 26 H 0.085 0.915 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.290 0.710 30 H 0.154 0.846 31 H 0.171 0.829 32 H 0.032 0.968 33 H 0.021 0.979 34 H 0.077 0.923 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.128 0.872 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.823 -24.590 4.676 25.699 hybrid contribution 0.000 0.757 -0.760 1.072 sum -5.823 -23.833 3.916 24.845 Atomic orbital electron populations 1.21994 0.88165 1.05898 1.04255 1.21160 1.00237 0.87791 0.98976 1.21488 0.77120 0.89683 0.79239 1.90846 1.35468 1.77396 1.35562 1.54893 1.62398 1.30370 1.32580 1.05495 0.74804 0.73723 0.76564 1.93553 1.31568 1.84656 1.86999 1.93564 1.81419 1.77222 1.43937 1.30228 1.14207 1.08373 1.18257 1.18822 0.96215 0.88070 0.98567 1.21445 1.28386 0.96469 1.11712 0.90655 1.26117 0.95715 0.97995 1.00271 1.70089 1.37137 1.09416 1.40613 0.85355 0.79211 0.77080 0.78564 1.18375 1.20853 1.19083 1.21796 0.91525 1.04254 0.96855 1.22698 0.99717 1.01788 0.96962 1.21318 0.74443 0.79551 0.99907 1.92969 1.88178 1.38998 1.97772 1.92976 1.32588 1.96700 1.97808 1.22833 0.99628 1.03086 0.96216 1.21488 0.91947 1.02626 0.97072 0.91481 0.87835 0.89607 0.71000 0.84635 0.82912 0.96754 0.97879 0.92302 0.87015 0.86239 0.87190 0.90793 0.88952 0.88800 0.87162 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.37 71.98 0.60 -0.31 16 2 C -0.08 -0.97 0.62 -52.93 -0.03 -1.01 16 3 C 0.54 11.91 4.71 87.66 0.41 12.32 16 4 O -0.52 -16.13 11.76 13.37 0.16 -15.97 16 5 N -1.03 -22.05 5.39 -173.53 -0.94 -22.98 16 6 S 2.60 90.17 5.11 -56.49 -0.29 89.88 16 7 O -0.98 -42.39 17.04 -120.72 -2.06 -44.44 16 8 O -0.97 -36.74 18.08 -127.65 -2.31 -39.04 16 9 C -0.58 -22.17 5.82 71.98 0.42 -21.75 16 10 C 0.02 1.17 4.98 29.85 0.15 1.32 16 11 C -0.54 -30.18 9.11 25.60 0.23 -29.95 16 12 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 13 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 14 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 15 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 16 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 19 C -0.11 -1.01 4.51 30.59 0.14 -0.87 16 20 C -0.17 -2.87 5.23 30.60 0.16 -2.71 16 21 C 0.28 5.79 2.10 30.60 0.06 5.86 16 22 F -0.20 -3.71 16.02 44.97 0.72 -2.99 16 23 F -0.22 -5.78 17.06 44.97 0.77 -5.01 16 24 C -0.18 -3.67 5.16 30.58 0.16 -3.51 16 25 C -0.09 -1.32 4.25 30.58 0.13 -1.19 16 26 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.09 0.26 7.56 -2.39 -0.02 0.24 16 29 H 0.45 5.25 7.62 -96.74 -0.74 4.51 16 30 H 0.14 5.09 7.19 -2.39 -0.02 5.07 16 31 H 0.15 4.77 8.14 -2.39 -0.02 4.75 16 32 H 0.01 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.11 0.52 7.56 -2.39 -0.02 0.50 16 36 H 0.12 0.61 7.80 -2.39 -0.02 0.59 16 37 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.59 7.22 -2.39 -0.02 1.58 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.09 2.53 5.51 -2.39 -0.01 2.51 16 41 H 0.11 1.01 7.80 -2.39 -0.02 0.99 16 42 H 0.09 1.30 8.10 -2.39 -0.02 1.28 16 Total: -1.00 -82.14 354.35 1.58 -80.56 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.31 Total: 12.76 kcal Atomic # 6 Polarization: -44.37 SS G_CDS: 2.90 Total: -41.47 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -0.65 Total: -79.58 kcal Atomic # 8 Polarization: -95.25 SS G_CDS: -4.21 Total: -99.46 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 1.49 Total: -8.00 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 90.17 SS G_CDS: -0.29 Total: 89.88 kcal Total: -82.14 1.58 -80.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331694498.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.985 kcal (2) G-P(sol) polarization free energy of solvation -82.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds