Wall clock time and date at job start Tue Mar 31 2020 22:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99920 * 2 1 4 4 H 1.48504 * 109.47029 * 274.89854 * 3 2 1 5 5 H 1.48504 * 109.46953 * 34.89540 * 3 2 1 6 6 H 1.48499 * 109.47049 * 154.89618 * 3 2 1 7 7 C 1.38812 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99656 * 339.75781 * 7 2 1 9 9 N 1.36942 * 119.99981 * 159.74658 * 7 2 1 10 10 C 1.46926 * 120.62976 * 332.80724 * 9 7 2 11 11 C 1.53196 * 108.76806 * 233.58077 * 10 9 7 12 12 C 1.53036 * 109.31392 * 305.36449 * 11 10 9 13 13 C 1.53035 * 109.53894 * 61.37050 * 12 11 10 14 14 H 1.08996 * 109.49967 * 58.61377 * 13 12 11 15 15 C 1.52998 * 109.50046 * 178.68423 * 13 12 11 16 16 N 1.46499 * 109.47440 * 184.99641 * 15 13 12 17 17 C 1.34774 * 120.00339 * 179.97438 * 16 15 13 18 18 O 1.21627 * 119.99805 * 0.02562 * 17 16 15 19 19 C 1.47292 * 120.00138 * 180.02562 * 17 16 15 20 20 C 1.38004 * 120.87294 * 359.97438 * 19 17 16 21 21 N 1.34318 * 120.39212 * 179.97438 * 20 19 17 22 22 H 0.96996 * 118.80291 * 180.02562 * 21 20 19 23 23 C 1.35648 * 122.39138 * 0.02562 * 21 20 19 24 24 C 1.34935 * 121.77334 * 0.27810 * 23 21 20 25 25 Cl 1.73608 * 120.33567 * 179.70249 * 24 23 21 26 26 C 1.41744 * 119.32741 * 359.43895 * 24 23 21 27 27 O 1.22099 * 121.07200 * 180.26029 * 26 24 23 28 28 C 1.46926 * 120.62511 * 152.77603 * 9 7 2 29 29 H 0.97003 * 120.00279 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.58376 * 113.79890 * 10 9 7 31 31 H 1.08998 * 109.58640 * 353.36544 * 10 9 7 32 32 H 1.08998 * 109.49287 * 185.41486 * 11 10 9 33 33 H 1.08994 * 109.52517 * 65.33552 * 11 10 9 34 34 H 1.09003 * 109.46176 * 301.34780 * 12 11 10 35 35 H 1.09001 * 109.44764 * 181.38298 * 12 11 10 36 36 H 1.09007 * 109.47372 * 64.99476 * 15 13 12 37 37 H 1.09009 * 109.47085 * 304.99916 * 15 13 12 38 38 H 0.97001 * 119.99653 * 0.02562 * 16 15 13 39 39 H 1.08000 * 119.80715 * 359.97438 * 20 19 17 40 40 H 1.07997 * 119.11258 * 180.02562 * 23 21 20 41 41 H 1.08994 * 109.58916 * 6.63273 * 28 9 7 42 42 H 1.08997 * 109.58819 * 246.20288 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3942 2.1063 -1.3950 5 1 1.5032 2.6206 0.8010 6 1 3.5957 1.4126 0.5940 7 6 2.0103 -1.2021 -0.0005 8 1 1.5203 -2.1087 0.3227 9 7 3.3162 -1.2386 -0.4111 10 6 3.8267 -0.2511 -1.3717 11 6 4.4782 -0.9936 -2.5427 12 6 5.5408 -1.9545 -2.0044 13 6 4.8804 -2.9855 -1.0863 14 1 4.1173 -3.5309 -1.6412 15 6 5.9382 -3.9654 -0.5746 16 7 5.2889 -5.0209 0.2068 17 6 6.0289 -6.0022 0.7596 18 8 7.2359 -6.0114 0.6102 19 6 5.3759 -7.0637 1.5448 20 6 4.0079 -7.0706 1.7262 21 7 3.4225 -8.0437 2.4436 22 1 2.4592 -8.0262 2.5561 23 6 4.1294 -9.0498 3.0164 24 6 5.4716 -9.1294 2.9028 25 17 6.3399 -10.4293 3.6578 26 6 6.1648 -8.1440 2.1560 27 8 7.3783 -8.1878 2.0286 28 6 4.2335 -2.2656 0.1013 29 1 -0.4851 0.8401 0.0004 30 1 4.5667 0.3839 -0.8846 31 1 3.0029 0.3604 -1.7398 32 1 4.9456 -0.2740 -3.2149 33 1 3.7188 -1.5574 -3.0843 34 1 6.2870 -1.3928 -1.4423 35 1 6.0229 -2.4661 -2.8374 36 1 6.6517 -3.4338 0.0551 37 1 6.4616 -4.4098 -1.4213 38 1 4.3262 -5.0138 0.3256 39 1 3.4044 -6.2891 1.2887 40 1 3.6042 -9.8052 3.5819 41 1 3.6781 -2.9832 0.7051 42 1 5.0066 -1.7949 0.7085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344676671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:12 Heat of formation + Delta-G solvation = -20.804587 kcal Electronic energy + Delta-G solvation = -26815.853616 eV Core-core repulsion = 22822.917746 eV Total energy + Delta-G solvation = -3992.935870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.28444 -39.37548 -38.20188 -37.81727 -36.75774 -34.90173 -33.22867 -32.23074 -31.67430 -30.93818 -30.46831 -26.28027 -25.36891 -24.58265 -23.56300 -22.11494 -21.68150 -20.89255 -19.82734 -19.21573 -17.96947 -17.28835 -16.79925 -16.41237 -15.79223 -15.54568 -15.50716 -15.41378 -15.08998 -14.17060 -14.00939 -13.92762 -13.68587 -13.53985 -13.50561 -13.27200 -13.08943 -12.63399 -12.52921 -12.26589 -12.13408 -11.68403 -11.53537 -11.40108 -10.87198 -10.63530 -10.56594 -10.22021 -10.11925 -9.93916 -9.93762 -9.71663 -9.52461 -9.43259 -8.97549 -8.69554 -8.39702 -7.05602 -6.04202 -3.39992 0.33778 0.84559 1.57099 2.41981 2.77922 3.13755 3.27146 3.43817 3.46517 3.57850 3.78012 4.20629 4.36033 4.45901 4.52192 4.75848 4.94322 5.06089 5.13854 5.20158 5.24815 5.36678 5.56920 5.60553 5.77621 5.83715 5.99582 6.04558 6.07420 6.10974 6.25163 6.26231 6.34494 6.43113 6.51740 6.53858 6.65014 6.67019 6.92131 7.55536 7.74784 7.85967 8.21576 8.34457 8.84200 9.63251 10.01840 11.11556 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.002529 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.125990 B =11067.059355 C =12185.737889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.261 4.261 8 H 0.084 0.916 9 N -0.606 5.606 10 C 0.124 3.876 11 C -0.134 4.134 12 C -0.101 4.101 13 C -0.119 4.119 14 H 0.077 0.923 15 C 0.130 3.870 16 N -0.728 5.728 17 C 0.572 3.428 18 O -0.513 6.513 19 C -0.286 4.286 20 C 0.175 3.825 21 N -0.570 5.570 22 H 0.432 0.568 23 C 0.139 3.861 24 C -0.190 4.190 25 Cl -0.031 7.031 26 C 0.412 3.588 27 O -0.453 6.453 28 C 0.157 3.843 29 H 0.263 0.737 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.395 0.605 39 H 0.178 0.822 40 H 0.176 0.824 41 H 0.057 0.943 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 -17.754 3.837 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.389 4.389 8 H 0.101 0.899 9 N -0.330 5.330 10 C -0.002 4.002 11 C -0.173 4.173 12 C -0.140 4.140 13 C -0.140 4.140 14 H 0.096 0.904 15 C 0.006 3.994 16 N -0.381 5.381 17 C 0.358 3.642 18 O -0.388 6.388 19 C -0.297 4.297 20 C 0.043 3.957 21 N -0.176 5.176 22 H 0.270 0.730 23 C 0.011 3.989 24 C -0.224 4.224 25 Cl -0.002 7.002 26 C 0.295 3.705 27 O -0.330 6.330 28 C 0.031 3.969 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.230 0.770 39 H 0.195 0.805 40 H 0.193 0.807 41 H 0.076 0.924 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 5.065 -17.806 3.752 18.889 hybrid contribution -0.729 0.922 0.208 1.194 sum 4.335 -16.885 3.960 17.876 Atomic orbital electron populations 1.69822 1.05739 1.26648 1.53011 1.25260 0.95221 0.97685 0.99372 0.86936 0.80136 0.84534 0.76968 1.21664 1.23224 1.19415 1.18854 0.84748 0.94592 1.40735 0.89858 1.44335 1.08378 1.32778 1.47484 1.21356 0.97146 0.91994 0.89661 1.21992 0.98061 0.98557 0.98708 1.21345 0.97737 0.96716 0.98153 1.21949 0.97033 0.95863 0.99119 0.90416 1.21429 0.95480 0.87554 0.94923 1.45951 1.10640 1.26869 1.54678 1.17343 0.86823 0.80812 0.79250 1.90866 1.13437 1.75294 1.59192 1.22312 0.92447 1.03255 1.11729 1.22446 0.94446 0.89948 0.88865 1.40679 1.12131 1.21021 1.43797 0.73035 1.21526 0.92164 0.90912 0.94259 1.22129 0.92640 0.98404 1.09194 1.98372 1.76366 1.45709 1.79755 1.17891 0.89376 0.83289 0.79974 1.90878 1.13881 1.73676 1.54595 1.20924 0.92409 0.91150 0.92464 0.92737 0.95631 0.91149 0.92672 0.91745 0.92249 0.92676 0.91399 0.91663 0.76969 0.80478 0.80707 0.92417 0.95717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.61 13.97 55.49 0.78 -25.84 16 2 C 0.02 0.65 5.24 -17.43 -0.09 0.56 16 3 Si 0.88 21.70 24.35 -169.99 -4.14 17.56 16 4 H -0.29 -6.89 6.70 56.52 0.38 -6.51 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.51 6.45 56.52 0.36 -6.15 16 7 C -0.26 -6.77 10.04 -15.06 -0.15 -6.92 16 8 H 0.08 2.25 8.05 -52.49 -0.42 1.82 16 9 N -0.61 -13.32 2.77 -172.32 -0.48 -13.79 16 10 C 0.12 2.56 4.19 -3.71 -0.02 2.55 16 11 C -0.13 -2.21 6.08 -26.61 -0.16 -2.38 16 12 C -0.10 -1.46 5.17 -26.69 -0.14 -1.59 16 13 C -0.12 -1.70 2.37 -90.50 -0.21 -1.92 16 14 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 15 C 0.13 1.73 5.07 -4.04 -0.02 1.71 16 16 N -0.73 -8.79 5.28 -61.42 -0.32 -9.11 16 17 C 0.57 8.40 7.77 -12.58 -0.10 8.30 16 18 O -0.51 -10.11 15.57 -14.77 -0.23 -10.34 16 19 C -0.29 -3.33 6.05 -102.72 -0.62 -3.95 16 20 C 0.17 1.03 10.73 -16.55 -0.18 0.86 16 21 N -0.57 -1.69 5.16 -12.71 -0.07 -1.76 16 22 H 0.43 -0.48 8.88 -40.82 -0.36 -0.84 16 23 C 0.14 0.64 10.86 -17.04 -0.19 0.46 16 24 C -0.19 -1.85 6.33 -39.42 -0.25 -2.10 16 25 Cl -0.03 -0.31 28.62 -51.86 -1.48 -1.79 16 26 C 0.41 5.79 6.96 -34.67 -0.24 5.54 16 27 O -0.45 -8.58 15.97 -15.20 -0.24 -8.82 16 28 C 0.16 2.74 5.60 -3.71 -0.02 2.72 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.03 0.53 6.98 -51.93 -0.36 0.17 16 31 H 0.07 1.61 4.49 -51.93 -0.23 1.38 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.40 3.69 5.78 -40.82 -0.24 3.45 16 39 H 0.18 0.54 6.42 -52.49 -0.34 0.20 16 40 H 0.18 0.13 8.06 -52.49 -0.42 -0.29 16 41 H 0.06 0.94 7.14 -51.93 -0.37 0.57 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 353.69 15.07 5.33 5.33 Total: -1.00 -39.09 353.69 -8.57 -47.66 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.32 Total: -2.93 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -2.39 Total: 3.84 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.09 Total: -50.50 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.47 Total: -19.16 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.14 Total: 17.56 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.48 Total: -1.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -39.09 -8.57 -47.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344676671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.858 kcal (2) G-P(sol) polarization free energy of solvation -39.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds