Wall clock time and date at job start Tue Mar 31 2020 22:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99920 * 2 1 4 4 H 1.48504 * 109.47029 * 274.89854 * 3 2 1 5 5 H 1.48504 * 109.46953 * 34.89540 * 3 2 1 6 6 H 1.48499 * 109.47049 * 154.89618 * 3 2 1 7 7 C 1.38812 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99656 * 339.75781 * 7 2 1 9 9 N 1.36942 * 119.99981 * 159.74658 * 7 2 1 10 10 C 1.46926 * 120.62976 * 332.80724 * 9 7 2 11 11 C 1.53196 * 108.76806 * 233.58077 * 10 9 7 12 12 C 1.53036 * 109.31392 * 305.36449 * 11 10 9 13 13 C 1.53035 * 109.53894 * 61.37050 * 12 11 10 14 14 H 1.08996 * 109.49967 * 58.61377 * 13 12 11 15 15 C 1.52998 * 109.50046 * 178.68423 * 13 12 11 16 16 N 1.46499 * 109.47440 * 184.99641 * 15 13 12 17 17 C 1.34774 * 120.00339 * 179.97438 * 16 15 13 18 18 O 1.21627 * 119.99805 * 0.02562 * 17 16 15 19 19 C 1.47292 * 120.00138 * 180.02562 * 17 16 15 20 20 C 1.38004 * 120.87294 * 359.97438 * 19 17 16 21 21 N 1.34318 * 120.39212 * 179.97438 * 20 19 17 22 22 H 0.96996 * 118.80291 * 180.02562 * 21 20 19 23 23 C 1.35648 * 122.39138 * 0.02562 * 21 20 19 24 24 C 1.34935 * 121.77334 * 0.27810 * 23 21 20 25 25 Cl 1.73608 * 120.33567 * 179.70249 * 24 23 21 26 26 C 1.41744 * 119.32741 * 359.43895 * 24 23 21 27 27 O 1.22099 * 121.07200 * 180.26029 * 26 24 23 28 28 C 1.46926 * 120.62511 * 152.77603 * 9 7 2 29 29 H 0.97003 * 120.00279 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.58376 * 113.79890 * 10 9 7 31 31 H 1.08998 * 109.58640 * 353.36544 * 10 9 7 32 32 H 1.08998 * 109.49287 * 185.41486 * 11 10 9 33 33 H 1.08994 * 109.52517 * 65.33552 * 11 10 9 34 34 H 1.09003 * 109.46176 * 301.34780 * 12 11 10 35 35 H 1.09001 * 109.44764 * 181.38298 * 12 11 10 36 36 H 1.09007 * 109.47372 * 64.99476 * 15 13 12 37 37 H 1.09009 * 109.47085 * 304.99916 * 15 13 12 38 38 H 0.97001 * 119.99653 * 0.02562 * 16 15 13 39 39 H 1.08000 * 119.80715 * 359.97438 * 20 19 17 40 40 H 1.07997 * 119.11258 * 180.02562 * 23 21 20 41 41 H 1.08994 * 109.58916 * 6.63273 * 28 9 7 42 42 H 1.08997 * 109.58819 * 246.20288 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3942 2.1063 -1.3950 5 1 1.5032 2.6206 0.8010 6 1 3.5957 1.4126 0.5940 7 6 2.0103 -1.2021 -0.0005 8 1 1.5203 -2.1087 0.3227 9 7 3.3162 -1.2386 -0.4111 10 6 3.8267 -0.2511 -1.3717 11 6 4.4782 -0.9936 -2.5427 12 6 5.5408 -1.9545 -2.0044 13 6 4.8804 -2.9855 -1.0863 14 1 4.1173 -3.5309 -1.6412 15 6 5.9382 -3.9654 -0.5746 16 7 5.2889 -5.0209 0.2068 17 6 6.0289 -6.0022 0.7596 18 8 7.2359 -6.0114 0.6102 19 6 5.3759 -7.0637 1.5448 20 6 4.0079 -7.0706 1.7262 21 7 3.4225 -8.0437 2.4436 22 1 2.4592 -8.0262 2.5561 23 6 4.1294 -9.0498 3.0164 24 6 5.4716 -9.1294 2.9028 25 17 6.3399 -10.4293 3.6578 26 6 6.1648 -8.1440 2.1560 27 8 7.3783 -8.1878 2.0286 28 6 4.2335 -2.2656 0.1013 29 1 -0.4851 0.8401 0.0004 30 1 4.5667 0.3839 -0.8846 31 1 3.0029 0.3604 -1.7398 32 1 4.9456 -0.2740 -3.2149 33 1 3.7188 -1.5574 -3.0843 34 1 6.2870 -1.3928 -1.4423 35 1 6.0229 -2.4661 -2.8374 36 1 6.6517 -3.4338 0.0551 37 1 6.4616 -4.4098 -1.4213 38 1 4.3262 -5.0138 0.3256 39 1 3.4044 -6.2891 1.2887 40 1 3.6042 -9.8052 3.5819 41 1 3.6781 -2.9832 0.7051 42 1 5.0066 -1.7949 0.7085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344676671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:11 Heat of formation + Delta-G solvation = -50.289549 kcal Electronic energy + Delta-G solvation = -26817.132180 eV Core-core repulsion = 22822.917746 eV Total energy + Delta-G solvation = -3994.214434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.00562 -40.45327 -39.44310 -38.82962 -37.47768 -36.25506 -34.74742 -33.29008 -32.64082 -32.39929 -31.66523 -27.53908 -26.99880 -25.45306 -24.30351 -23.64480 -23.00688 -21.91813 -20.96598 -20.14238 -18.71291 -18.68775 -17.98400 -17.36999 -17.17249 -16.75755 -16.58396 -16.25848 -16.21813 -15.61853 -15.34371 -15.06749 -14.90304 -14.79873 -14.44979 -14.31451 -14.17144 -13.93700 -13.88934 -13.61173 -13.25540 -13.16425 -13.01720 -12.53915 -12.14951 -12.13465 -12.08338 -11.66744 -11.54839 -11.35780 -11.24289 -11.12996 -10.64562 -10.60828 -10.43902 -10.05944 -9.19183 -8.88947 -8.13217 -5.42916 -0.36093 0.23075 0.96483 1.31489 1.43786 1.50579 1.80616 1.89981 2.17093 2.44468 2.66800 3.09464 3.22719 3.35275 3.67859 3.73930 3.89925 3.94187 4.00327 4.04673 4.24643 4.29738 4.43300 4.45158 4.58140 4.67143 4.80184 4.82157 4.88301 4.95620 5.02288 5.11708 5.18434 5.28822 5.32295 5.41475 5.47463 5.61258 5.90721 5.99211 6.16742 6.60801 6.91253 6.95190 7.33289 7.66652 8.09068 9.05920 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.002529 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.125990 B =11067.059355 C =12185.737889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.033 4.033 3 Si 0.934 3.066 4 H -0.282 1.282 5 H -0.316 1.316 6 H -0.265 1.265 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.619 5.619 10 C 0.115 3.885 11 C -0.126 4.126 12 C -0.101 4.101 13 C -0.101 4.101 14 H 0.083 0.917 15 C 0.138 3.862 16 N -0.714 5.714 17 C 0.570 3.430 18 O -0.577 6.577 19 C -0.338 4.338 20 C 0.227 3.773 21 N -0.537 5.537 22 H 0.461 0.539 23 C 0.188 3.812 24 C -0.231 4.231 25 Cl -0.044 7.044 26 C 0.392 3.608 27 O -0.535 6.535 28 C 0.152 3.848 29 H 0.259 0.741 30 H 0.026 0.974 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.410 0.590 39 H 0.218 0.782 40 H 0.229 0.771 41 H 0.070 0.930 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.660 -18.744 3.813 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.227 4.227 3 Si 0.765 3.235 4 H -0.209 1.209 5 H -0.246 1.246 6 H -0.189 1.189 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.343 5.343 10 C -0.010 4.010 11 C -0.164 4.164 12 C -0.139 4.139 13 C -0.121 4.121 14 H 0.101 0.899 15 C 0.014 3.986 16 N -0.368 5.368 17 C 0.359 3.641 18 O -0.457 6.457 19 C -0.349 4.349 20 C 0.092 3.908 21 N -0.144 5.144 22 H 0.306 0.694 23 C 0.059 3.941 24 C -0.263 4.263 25 Cl -0.015 7.015 26 C 0.281 3.719 27 O -0.420 6.420 28 C 0.027 3.973 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.248 0.752 39 H 0.234 0.766 40 H 0.246 0.754 41 H 0.088 0.912 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.095 -18.811 3.733 19.426 hybrid contribution -0.332 1.149 0.260 1.224 sum 2.763 -17.662 3.992 18.317 Atomic orbital electron populations 1.69922 1.07047 1.26877 1.56279 1.25776 0.95694 1.00345 1.00928 0.86102 0.78900 0.81465 0.77014 1.20876 1.24588 1.18933 1.18945 0.86188 0.93687 1.37873 0.91261 1.44508 1.07770 1.33857 1.48188 1.21415 0.96465 0.92145 0.90956 1.21890 0.98354 0.99026 0.97179 1.21375 0.97144 0.96395 0.99027 1.21729 0.97020 0.95651 0.97718 0.89867 1.21253 0.94983 0.87479 0.94893 1.45771 1.11212 1.25921 1.53874 1.17811 0.86234 0.81330 0.78774 1.90827 1.16259 1.76884 1.61720 1.21917 0.94592 1.03418 1.14964 1.22795 0.92463 0.89866 0.85723 1.40967 1.13641 1.19061 1.40729 0.69441 1.22147 0.90466 0.90522 0.90982 1.21920 0.94267 0.98606 1.11551 1.98356 1.77232 1.45972 1.79958 1.18611 0.88997 0.84463 0.79830 1.90828 1.16763 1.76001 1.58453 1.21122 0.91808 0.90492 0.93878 0.93188 0.95625 0.93629 0.90428 0.92198 0.92018 0.90058 0.92605 0.91486 0.75172 0.76585 0.75444 0.91176 0.95976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.42 13.97 21.65 0.30 -56.12 16 2 C -0.03 -1.79 5.24 84.86 0.44 -1.35 16 3 Si 0.93 44.88 24.35 68.60 1.67 46.55 16 4 H -0.28 -13.00 6.70 99.48 0.67 -12.33 16 5 H -0.32 -15.69 7.11 99.48 0.71 -14.98 16 6 H -0.26 -12.30 6.45 99.48 0.64 -11.66 16 7 C -0.24 -12.06 10.04 84.03 0.84 -11.22 16 8 H 0.07 3.66 8.05 -2.91 -0.02 3.64 16 9 N -0.62 -26.04 2.77 -699.09 -1.94 -27.98 16 10 C 0.12 4.55 4.19 86.36 0.36 4.91 16 11 C -0.13 -3.78 6.08 30.67 0.19 -3.60 16 12 C -0.10 -2.58 5.17 30.62 0.16 -2.43 16 13 C -0.10 -2.60 2.37 -10.72 -0.03 -2.63 16 14 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 15 C 0.14 3.45 5.07 86.38 0.44 3.89 16 16 N -0.71 -15.96 5.28 -466.49 -2.46 -18.43 16 17 C 0.57 16.84 7.77 86.62 0.67 17.51 16 18 O -0.58 -24.13 15.57 15.03 0.23 -23.89 16 19 C -0.34 -7.56 6.05 -18.63 -0.11 -7.67 16 20 C 0.23 1.67 10.73 84.26 0.90 2.57 16 21 N -0.54 0.03 5.16 -194.13 -1.00 -0.97 16 22 H 0.46 -4.58 8.88 -92.71 -0.82 -5.41 16 23 C 0.19 0.84 10.86 83.34 0.91 1.74 16 24 C -0.23 -4.20 6.33 22.38 0.14 -4.06 16 25 Cl -0.04 -0.87 28.62 -2.72 -0.08 -0.95 16 26 C 0.39 11.38 6.96 25.45 0.18 11.56 16 27 O -0.54 -22.27 15.97 13.51 0.22 -22.05 16 28 C 0.15 4.93 5.60 86.36 0.48 5.41 16 29 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.03 1.02 6.98 -2.39 -0.02 1.00 16 31 H 0.05 2.03 4.49 -2.39 -0.01 2.02 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.41 6.24 5.78 -92.71 -0.54 5.70 16 39 H 0.22 -0.03 6.42 -2.91 -0.02 -0.05 16 40 H 0.23 -1.23 8.06 -2.91 -0.02 -1.25 16 41 H 0.07 2.06 7.14 -2.39 -0.02 2.05 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -95.46 353.69 2.14 -93.32 By element: Atomic # 1 Polarization: -3.75 SS G_CDS: -0.38 Total: -4.13 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 5.58 Total: 14.65 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -5.10 Total: -103.49 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: 0.45 Total: -45.95 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.67 Total: 46.55 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -95.46 2.14 -93.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344676671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.033 kcal (2) G-P(sol) polarization free energy of solvation -95.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds