Wall clock time and date at job start Tue Mar 31 2020 22:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99884 * 2 1 4 4 H 1.48498 * 109.47437 * 270.00749 * 3 2 1 5 5 H 1.48504 * 109.46972 * 30.00835 * 3 2 1 6 6 H 1.48504 * 109.46957 * 150.00546 * 3 2 1 7 7 C 1.37876 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00085 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99548 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46898 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47237 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99564 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99770 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00213 * 0.02562 * 13 11 10 15 15 C 1.53007 * 109.46943 * 269.99599 * 14 13 11 16 16 F 1.39891 * 109.47071 * 300.00078 * 15 14 13 17 17 F 1.39896 * 109.47015 * 60.00563 * 15 14 13 18 18 C 1.46506 * 119.99692 * 180.02562 * 13 11 10 19 19 C 1.52577 * 109.19485 * 298.77075 * 18 13 11 20 20 C 1.53036 * 109.99385 * 190.16676 * 19 18 13 21 21 S 1.81667 * 109.07712 * 296.49981 * 20 19 18 22 22 O 1.42099 * 108.66349 * 168.57891 * 21 20 19 23 23 O 1.42099 * 108.66329 * 299.82153 * 21 20 19 24 24 C 1.81664 * 101.31039 * 54.24906 * 21 20 19 25 25 C 1.52588 * 109.24129 * 60.00009 * 18 13 11 26 26 H 0.97003 * 120.00316 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47117 * 60.00521 * 9 7 2 28 28 H 1.08994 * 109.47661 * 299.99902 * 9 7 2 29 29 H 1.09006 * 109.46790 * 60.00698 * 10 9 7 30 30 H 1.08994 * 109.47845 * 300.00734 * 10 9 7 31 31 H 1.08995 * 109.47567 * 29.99652 * 14 13 11 32 32 H 1.09006 * 109.47331 * 150.00215 * 14 13 11 33 33 H 1.09007 * 109.46773 * 180.02562 * 15 14 13 34 34 H 1.08999 * 109.23840 * 179.44345 * 18 13 11 35 35 H 1.09002 * 109.30212 * 70.05730 * 19 18 13 36 36 H 1.09000 * 109.46132 * 310.37737 * 19 18 13 37 37 H 1.09002 * 109.55147 * 176.59390 * 20 19 18 38 38 H 1.09003 * 109.54767 * 56.40206 * 20 19 18 39 39 H 1.09002 * 109.55358 * 65.55729 * 24 21 20 40 40 H 1.08999 * 109.55462 * 185.74896 * 24 21 20 41 41 H 1.08998 * 109.38394 * 49.59790 * 25 18 13 42 42 H 1.09004 * 109.30132 * 289.85514 * 25 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5286 -2.6365 -0.0022 12 8 6.1349 -1.5861 -0.0026 13 7 6.2024 -3.8037 -0.0028 14 6 5.4699 -5.0724 -0.0029 15 6 5.2156 -5.5145 1.4396 16 9 6.4383 -5.6820 2.0984 17 9 4.4598 -4.5398 2.0997 18 6 7.6674 -3.8037 -0.0035 19 6 8.1685 -3.1098 -1.2665 20 6 9.6774 -3.3184 -1.4146 21 16 10.5263 -2.5255 -0.0178 22 8 11.8845 -2.9432 -0.0149 23 8 10.2259 -1.1367 -0.0322 24 6 9.6795 -3.2916 1.3951 25 6 8.1708 -3.0837 1.2442 26 1 -0.4851 0.8400 0.0004 27 1 3.8751 -0.6804 0.8889 28 1 3.8745 -0.6800 -0.8911 29 1 3.6579 -3.1504 -0.8908 30 1 3.6585 -3.1502 0.8891 31 1 4.5173 -4.9419 -0.5162 32 1 6.0588 -5.8319 -0.5172 33 1 4.6710 -6.4587 1.4396 34 1 8.0266 -4.8328 0.0061 35 1 7.9556 -2.0428 -1.2001 36 1 7.6588 -3.5254 -2.1358 37 1 10.0174 -2.8720 -2.3491 38 1 9.8994 -4.3856 -1.4182 39 1 9.9002 -4.3588 1.4177 40 1 10.0221 -2.8287 2.3205 41 1 7.6612 -3.4815 2.1218 42 1 7.9596 -2.0181 1.1551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347459809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:34 Heat of formation + Delta-G solvation = -208.741169 kcal Electronic energy + Delta-G solvation = -29394.932145 eV Core-core repulsion = 24945.201253 eV Total energy + Delta-G solvation = -4449.730892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.09247 -47.10226 -40.33374 -37.39756 -36.84678 -36.19705 -34.97936 -33.47100 -32.14241 -31.27731 -29.80089 -27.52857 -25.55519 -23.94605 -23.58443 -22.11789 -20.66452 -19.14363 -18.76119 -17.88281 -17.56174 -17.29348 -17.17475 -16.64610 -16.56002 -16.15642 -15.96891 -15.56851 -14.90736 -14.63979 -14.18018 -14.03470 -13.88848 -13.66462 -13.51004 -13.40005 -13.24438 -12.97699 -12.90654 -12.65107 -12.52697 -12.39991 -12.31709 -12.17109 -11.99211 -11.82790 -11.53435 -11.41512 -11.23585 -10.92961 -10.88098 -10.26763 -10.13655 -10.03791 -9.78388 -9.26137 -9.18198 -8.89372 -8.51501 -6.04216 -4.03030 -0.21097 2.42414 2.62690 2.83587 3.37898 3.42737 3.45038 3.56222 3.60938 3.74025 4.02418 4.15470 4.19389 4.25203 4.38175 4.47796 4.50459 4.53187 4.71030 4.85047 4.90960 5.01345 5.05146 5.14334 5.21168 5.31651 5.31999 5.56185 5.65717 5.84459 5.94731 6.01396 6.11065 6.37983 6.63306 7.30105 7.33461 7.41372 7.77164 8.36405 8.51562 8.98173 9.59033 11.08521 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.003970 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.570497 B = 7051.829860 C = 8584.062503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.070 3.930 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.133 4.133 11 C 0.516 3.484 12 O -0.517 6.517 13 N -0.620 5.620 14 C 0.062 3.938 15 C 0.239 3.761 16 F -0.206 7.206 17 F -0.191 7.191 18 C 0.138 3.862 19 C -0.129 4.129 20 C -0.598 4.598 21 S 2.411 3.589 22 O -0.949 6.949 23 O -0.926 6.926 24 C -0.595 4.595 25 C -0.130 4.130 26 H 0.263 0.737 27 H 0.024 0.976 28 H 0.018 0.982 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.093 0.907 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.707 -17.157 -0.545 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.035 4.035 10 C -0.173 4.173 11 C 0.307 3.693 12 O -0.391 6.391 13 N -0.355 5.355 14 C -0.064 4.064 15 C 0.184 3.816 16 F -0.188 7.188 17 F -0.172 7.172 18 C 0.035 3.965 19 C -0.168 4.168 20 C -0.727 4.727 21 S 2.593 3.407 22 O -0.946 6.946 23 O -0.923 6.923 24 C -0.725 4.725 25 C -0.169 4.169 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.138 0.862 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.111 0.889 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 18.567 -15.781 -0.527 24.373 hybrid contribution -0.222 0.042 0.120 0.256 sum 18.345 -15.739 -0.406 24.175 Atomic orbital electron populations 1.69906 1.06298 1.26987 1.51038 1.24955 0.94688 0.99203 0.94292 0.86822 0.80704 0.83432 0.78759 1.20252 1.21444 1.18453 1.21071 0.89193 0.94506 1.51407 0.90981 1.19367 0.96508 0.90002 0.97664 1.21959 0.87548 1.03865 1.03883 1.21724 0.91798 0.82132 0.73655 1.90653 1.70320 1.30644 1.47476 1.48115 1.04990 1.05937 1.76456 1.22811 1.01213 0.87909 0.94429 1.22616 0.78027 0.91920 0.89067 1.92961 1.46456 1.96061 1.83287 1.93018 1.75730 1.65600 1.82846 1.21111 0.80991 1.00358 0.94082 1.21752 0.90578 1.05508 0.98999 1.30170 1.08268 1.14063 1.20247 1.08260 0.76023 0.76999 0.79439 1.93583 1.30774 1.84106 1.86132 1.93637 1.85368 1.27861 1.85475 1.30155 1.08255 1.13879 1.20203 1.21759 0.90584 1.05147 0.99452 0.92715 0.95759 0.96340 0.89819 0.88047 0.86234 0.87412 0.86474 0.88873 0.87391 0.89217 0.84515 0.85089 0.85051 0.84498 0.88895 0.87415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.48 27.47 -169.99 -4.67 17.81 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 7 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C 0.00 0.06 3.33 -27.88 -0.09 -0.03 16 10 C -0.13 -2.42 4.12 -27.88 -0.11 -2.53 16 11 C 0.52 8.45 6.76 -10.98 -0.07 8.38 16 12 O -0.52 -10.25 12.49 5.56 0.07 -10.18 16 13 N -0.62 -7.00 2.32 -166.59 -0.39 -7.39 16 14 C 0.06 0.45 5.56 -4.04 -0.02 0.42 16 15 C 0.24 1.90 5.60 37.16 0.21 2.11 16 16 F -0.21 -1.91 16.26 2.25 0.04 -1.87 16 17 F -0.19 -2.42 14.31 2.25 0.03 -2.39 16 18 C 0.14 1.32 1.89 -68.36 -0.13 1.19 16 19 C -0.13 -1.26 4.78 -26.93 -0.13 -1.39 16 20 C -0.60 -4.26 6.34 37.18 0.24 -4.02 16 21 S 2.41 23.73 5.30 -107.50 -0.57 23.16 16 22 O -0.95 -11.73 18.10 -57.82 -1.05 -12.77 16 23 O -0.93 -13.54 17.97 -57.82 -1.04 -14.57 16 24 C -0.59 -4.72 6.35 37.18 0.24 -4.48 16 25 C -0.13 -1.43 4.75 -26.92 -0.13 -1.55 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 28 H 0.02 0.46 7.53 -51.93 -0.39 0.07 16 29 H 0.08 1.35 7.40 -51.93 -0.38 0.96 16 30 H 0.10 1.79 5.48 -51.93 -0.28 1.50 16 31 H 0.12 0.81 6.44 -51.93 -0.33 0.47 16 32 H 0.11 0.39 7.92 -51.93 -0.41 -0.02 16 33 H 0.12 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.09 0.56 7.74 -51.93 -0.40 0.16 16 35 H 0.11 1.42 6.43 -51.93 -0.33 1.09 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.14 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.06 7.51 -51.93 -0.39 0.67 16 42 H 0.11 1.52 6.35 -51.93 -0.33 1.19 16 LS Contribution 348.64 15.07 5.25 5.25 Total: -1.00 -39.91 348.64 -7.74 -47.65 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.75 Total: -2.84 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -0.44 Total: -14.94 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.39 Total: -34.30 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -2.02 Total: -37.53 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.07 Total: -4.26 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Atomic # 16 Polarization: 23.73 SS G_CDS: -0.57 Total: 23.16 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -39.91 -7.74 -47.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347459809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.094 kcal (2) G-P(sol) polarization free energy of solvation -39.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds