Wall clock time and date at job start Tue Mar 31 2020 23:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47009 * 2 1 4 4 H 1.09002 * 109.46786 * 179.44325 * 3 2 1 5 5 N 1.46503 * 109.47247 * 59.44828 * 3 2 1 6 6 C 1.39770 * 120.00236 * 83.94441 * 5 3 2 7 7 C 1.39223 * 120.49757 * 5.40910 * 6 5 3 8 8 C 1.38559 * 118.37244 * 179.73299 * 7 6 5 9 9 C 1.38219 * 119.26961 * 0.52971 * 8 7 6 10 10 N 1.31901 * 120.93577 * 359.73558 * 9 8 7 11 11 C 1.31888 * 121.77954 * 0.02562 * 10 9 8 12 12 Cl 1.73602 * 119.68258 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47259 * 299.44026 * 3 2 1 14 14 O 1.21290 * 119.99508 * 100.45743 * 13 3 2 15 15 N 1.34770 * 120.00291 * 280.46014 * 13 3 2 16 16 C 1.47068 * 136.05699 * 4.68654 * 15 13 3 17 17 C 1.53760 * 87.88615 * 152.96153 * 16 15 13 18 18 O 1.42897 * 114.39568 * 272.67508 * 17 16 15 19 19 C 1.50708 * 114.26297 * 139.79149 * 17 16 15 20 20 H 1.07995 * 120.00037 * 266.47424 * 19 17 16 21 21 C 1.37881 * 119.99742 * 86.47947 * 19 17 16 22 22 N 1.31511 * 120.00015 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 119.99692 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47053 * 89.99584 * 23 21 19 25 25 H 1.48498 * 109.46715 * 209.99898 * 23 21 19 26 26 H 1.48496 * 109.47138 * 329.99973 * 23 21 19 27 27 C 1.47066 * 136.06049 * 185.05523 * 15 13 3 28 28 H 1.09003 * 109.46766 * 66.04605 * 1 2 3 29 29 H 1.09003 * 109.47335 * 186.04652 * 1 2 3 30 30 H 1.09000 * 109.47171 * 306.04705 * 1 2 3 31 31 H 1.09001 * 109.46957 * 239.99698 * 2 1 3 32 32 H 1.09007 * 109.46798 * 119.99813 * 2 1 3 33 33 H 0.97003 * 119.99218 * 264.21886 * 5 3 2 34 34 H 1.07998 * 120.81192 * 0.02562 * 7 6 5 35 35 H 1.08003 * 120.36795 * 180.24043 * 8 7 6 36 36 H 1.07999 * 119.53174 * 179.76777 * 9 8 7 37 37 H 1.08994 * 113.47101 * 267.69257 * 16 15 13 38 38 H 1.09001 * 113.46581 * 38.13411 * 16 15 13 39 39 H 0.96700 * 114.00326 * 273.58811 * 18 17 16 40 40 H 0.97002 * 119.99760 * 179.97438 * 22 21 19 41 41 H 1.09002 * 113.46403 * 321.87222 * 27 15 13 42 42 H 1.09003 * 113.46610 * 92.24709 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0100 5 7 1.5408 2.1369 1.1895 6 6 2.2195 2.0164 2.4054 7 6 3.4302 1.3326 2.4741 8 6 4.0681 1.2447 3.7010 9 6 3.4819 1.8242 4.8105 10 7 2.3308 2.4610 4.7144 11 6 1.6924 2.5724 3.5657 12 17 0.1799 3.4221 3.5017 13 6 1.5490 2.1489 -1.2373 14 8 0.5927 2.8920 -1.1721 15 7 2.1725 1.9548 -2.4163 16 6 3.2659 1.1032 -2.9084 17 6 2.6190 1.1756 -4.3014 18 8 1.6235 0.1792 -4.5424 19 6 3.6024 1.3214 -5.4341 20 1 3.8578 2.3031 -5.8045 21 6 4.1759 0.2012 -5.9975 22 7 3.8652 -0.9943 -5.5462 23 14 5.3943 0.3819 -7.4019 24 1 6.7684 0.5045 -6.8524 25 1 5.3173 -0.8127 -8.2807 26 1 5.0657 1.5974 -8.1890 27 6 2.0633 2.5061 -3.7753 28 1 -0.3633 0.4173 -0.9392 29 1 -0.3634 -1.0220 0.1083 30 1 -0.3633 0.6047 0.8309 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 0.7371 2.6772 1.1340 34 1 3.8639 0.8856 1.5918 35 1 5.0107 0.7251 3.7903 36 1 3.9736 1.7550 5.7696 37 1 4.2443 1.5811 -2.8589 38 1 3.2632 0.1016 -2.4784 39 1 1.9768 -0.6578 -4.8737 40 1 4.2684 -1.7823 -5.9428 41 1 1.0360 2.6999 -4.0838 42 1 2.7240 3.3545 -3.9539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349663628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:34 Heat of formation + Delta-G solvation = -13.293243 kcal Electronic energy + Delta-G solvation = -27458.888795 eV Core-core repulsion = 23466.278641 eV Total energy + Delta-G solvation = -3992.610154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.64720 -39.84945 -38.12059 -36.66539 -36.21732 -34.16689 -33.18524 -32.29094 -32.03674 -29.59502 -29.05033 -26.81091 -25.33076 -25.14455 -23.68485 -23.12527 -21.79454 -20.00759 -18.68890 -18.05838 -17.52268 -17.25948 -16.58874 -15.98275 -15.77992 -15.48325 -15.21617 -14.76691 -14.55634 -14.36482 -14.25512 -13.92412 -13.64868 -13.25389 -13.04274 -12.70633 -12.52341 -12.34368 -12.12100 -11.87365 -11.76308 -11.66292 -11.51301 -11.32834 -11.18918 -11.11602 -10.94193 -10.71193 -10.57595 -10.36595 -9.80887 -9.75340 -9.60831 -9.32443 -8.88749 -8.53274 -8.03140 -7.73412 -6.50438 -4.60897 0.87014 1.16610 1.81039 2.75678 3.00191 3.07514 3.16808 3.20153 3.50513 3.57948 4.09827 4.41630 4.54453 4.58650 4.73702 4.79559 4.88621 4.89496 5.00330 5.17472 5.32734 5.43534 5.50371 5.63508 5.75988 5.78699 5.91978 5.97903 6.02717 6.10830 6.20682 6.28279 6.32493 6.39821 6.43777 6.54364 6.85766 6.98668 7.45147 7.53084 7.66590 7.69282 8.28513 8.42732 8.49676 9.10932 9.37860 10.56196 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.002823 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.265359 B = 9915.029371 C =10501.830496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C 0.137 3.863 4 H 0.099 0.901 5 N -0.710 5.710 6 C 0.200 3.800 7 C -0.153 4.153 8 C -0.113 4.113 9 C 0.046 3.954 10 N -0.438 5.438 11 C 0.096 3.904 12 Cl -0.037 7.037 13 C 0.537 3.463 14 O -0.555 6.555 15 N -0.629 5.629 16 C 0.067 3.933 17 C 0.243 3.757 18 O -0.570 6.570 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.897 5.897 23 Si 0.909 3.091 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.107 3.893 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.416 0.584 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.160 0.840 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.394 0.606 40 H 0.275 0.725 41 H 0.068 0.932 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 0.509 14.440 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.028 3.972 4 H 0.116 0.884 5 N -0.341 5.341 6 C 0.090 3.910 7 C -0.183 4.183 8 C -0.134 4.134 9 C -0.114 4.114 10 N -0.147 5.147 11 C -0.075 4.075 12 Cl -0.009 7.009 13 C 0.325 3.675 14 O -0.435 6.435 15 N -0.362 5.362 16 C -0.056 4.056 17 C 0.201 3.799 18 O -0.383 6.383 19 C -0.573 4.573 20 H 0.091 0.909 21 C -0.130 4.130 22 N -0.538 5.538 23 Si 0.736 3.264 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.195 1.195 27 C -0.015 4.015 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.256 0.744 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.177 0.823 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.251 0.749 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.321 1.557 15.383 15.465 hybrid contribution 1.129 -0.547 -1.549 1.993 sum 1.450 1.010 13.834 13.946 Atomic orbital electron populations 1.21702 0.94676 1.01648 1.02600 1.21915 0.97863 0.93889 1.03392 1.20796 0.99678 0.92711 0.84017 0.88362 1.44663 1.30702 1.53820 1.04872 1.18343 0.92097 0.94544 0.85982 1.21179 0.94115 1.03423 0.99616 1.22010 1.00479 0.98352 0.92560 1.22320 0.91734 0.98139 0.99222 1.66798 1.08533 1.14215 1.25201 1.20965 0.92851 1.04252 0.89396 1.98387 1.28593 1.75998 1.97901 1.19693 0.83301 0.81668 0.82863 1.90651 1.27849 1.40032 1.84960 1.49645 1.36079 1.42224 1.08240 1.24389 0.90304 0.93426 0.97485 1.19533 0.85646 0.84952 0.89740 1.86053 1.36000 1.28183 1.88052 1.21425 1.24213 0.94047 1.17633 0.90899 1.25071 0.96255 0.94859 0.96771 1.69250 1.44158 0.98135 1.42236 0.86306 0.80666 0.78126 0.81315 1.20250 1.20841 1.19496 1.23379 1.01524 0.98730 0.77827 0.92097 0.92504 0.92596 0.89703 0.90914 0.74398 0.83852 0.84109 0.82289 0.89878 0.91489 0.74904 0.91499 0.91387 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.48 37.16 0.35 -1.75 16 2 C -0.13 -1.75 5.86 -26.73 -0.16 -1.90 16 3 C 0.14 1.95 2.30 -69.08 -0.16 1.79 16 4 H 0.10 1.25 6.38 -51.93 -0.33 0.92 16 5 N -0.71 -9.82 4.28 -53.14 -0.23 -10.05 16 6 C 0.20 2.55 6.64 -83.58 -0.55 2.00 16 7 C -0.15 -1.61 9.24 -39.10 -0.36 -1.97 16 8 C -0.11 -1.00 10.10 -39.47 -0.40 -1.40 16 9 C 0.05 0.45 11.17 -17.53 -0.20 0.26 16 10 N -0.44 -5.66 10.33 -10.20 -0.11 -5.77 16 11 C 0.10 1.28 7.29 -17.23 -0.13 1.16 16 12 Cl -0.04 -0.49 27.77 -51.86 -1.44 -1.93 16 13 C 0.54 9.83 6.23 -10.99 -0.07 9.76 16 14 O -0.56 -11.65 16.60 5.55 0.09 -11.56 16 15 N -0.63 -12.02 3.69 -185.06 -0.68 -12.71 16 16 C 0.07 1.28 7.86 -8.38 -0.07 1.22 16 17 C 0.24 5.40 1.58 -91.12 -0.14 5.26 16 18 O -0.57 -13.77 13.55 -35.23 -0.48 -14.25 16 19 C -0.54 -12.57 8.70 -34.43 -0.30 -12.87 16 20 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 21 C 0.07 1.71 5.39 -17.82 -0.10 1.62 16 22 N -0.90 -21.36 11.01 55.43 0.61 -20.75 16 23 Si 0.91 18.46 29.54 -169.99 -5.02 13.44 16 24 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 27 C 0.11 2.18 8.02 -8.52 -0.07 2.12 16 28 H 0.06 1.02 7.39 -51.93 -0.38 0.63 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.78 7.39 -51.93 -0.38 0.40 16 31 H 0.08 1.20 7.34 -51.93 -0.38 0.82 16 32 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 33 H 0.42 6.29 6.42 -40.82 -0.26 6.03 16 34 H 0.14 1.33 6.29 -52.49 -0.33 1.00 16 35 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 38 H 0.07 1.25 7.34 -51.93 -0.38 0.87 16 39 H 0.39 9.67 6.33 45.56 0.29 9.95 16 40 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 41 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 42 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -26.89 365.61 -8.74 -35.63 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -4.66 Total: 17.15 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -2.34 Total: 5.27 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.40 Total: -49.27 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.39 Total: -25.80 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.44 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.44 Total: -1.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -26.89 -8.74 -35.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349663628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.338 kcal (2) G-P(sol) polarization free energy of solvation -26.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds