Wall clock time and date at job start Tue Mar 31 2020 23:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47009 * 2 1 4 4 H 1.09002 * 109.46786 * 179.44325 * 3 2 1 5 5 N 1.46503 * 109.47247 * 59.44828 * 3 2 1 6 6 C 1.39770 * 120.00236 * 83.94441 * 5 3 2 7 7 C 1.39223 * 120.49757 * 5.40910 * 6 5 3 8 8 C 1.38559 * 118.37244 * 179.73299 * 7 6 5 9 9 C 1.38219 * 119.26961 * 0.52971 * 8 7 6 10 10 N 1.31901 * 120.93577 * 359.73558 * 9 8 7 11 11 C 1.31888 * 121.77954 * 0.02562 * 10 9 8 12 12 Cl 1.73602 * 119.68258 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47259 * 299.44026 * 3 2 1 14 14 O 1.21290 * 119.99508 * 100.45743 * 13 3 2 15 15 N 1.34770 * 120.00291 * 280.46014 * 13 3 2 16 16 C 1.47068 * 136.05699 * 4.68654 * 15 13 3 17 17 C 1.53760 * 87.88615 * 152.96153 * 16 15 13 18 18 O 1.42897 * 114.39568 * 272.67508 * 17 16 15 19 19 C 1.50708 * 114.26297 * 139.79149 * 17 16 15 20 20 H 1.07995 * 120.00037 * 266.47424 * 19 17 16 21 21 C 1.37881 * 119.99742 * 86.47947 * 19 17 16 22 22 N 1.31511 * 120.00015 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 119.99692 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47053 * 89.99584 * 23 21 19 25 25 H 1.48498 * 109.46715 * 209.99898 * 23 21 19 26 26 H 1.48496 * 109.47138 * 329.99973 * 23 21 19 27 27 C 1.47066 * 136.06049 * 185.05523 * 15 13 3 28 28 H 1.09003 * 109.46766 * 66.04605 * 1 2 3 29 29 H 1.09003 * 109.47335 * 186.04652 * 1 2 3 30 30 H 1.09000 * 109.47171 * 306.04705 * 1 2 3 31 31 H 1.09001 * 109.46957 * 239.99698 * 2 1 3 32 32 H 1.09007 * 109.46798 * 119.99813 * 2 1 3 33 33 H 0.97003 * 119.99218 * 264.21886 * 5 3 2 34 34 H 1.07998 * 120.81192 * 0.02562 * 7 6 5 35 35 H 1.08003 * 120.36795 * 180.24043 * 8 7 6 36 36 H 1.07999 * 119.53174 * 179.76777 * 9 8 7 37 37 H 1.08994 * 113.47101 * 267.69257 * 16 15 13 38 38 H 1.09001 * 113.46581 * 38.13411 * 16 15 13 39 39 H 0.96700 * 114.00326 * 273.58811 * 18 17 16 40 40 H 0.97002 * 119.99760 * 179.97438 * 22 21 19 41 41 H 1.09002 * 113.46403 * 321.87222 * 27 15 13 42 42 H 1.09003 * 113.46610 * 92.24709 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0100 5 7 1.5408 2.1369 1.1895 6 6 2.2195 2.0164 2.4054 7 6 3.4302 1.3326 2.4741 8 6 4.0681 1.2447 3.7010 9 6 3.4819 1.8242 4.8105 10 7 2.3308 2.4610 4.7144 11 6 1.6924 2.5724 3.5657 12 17 0.1799 3.4221 3.5017 13 6 1.5490 2.1489 -1.2373 14 8 0.5927 2.8920 -1.1721 15 7 2.1725 1.9548 -2.4163 16 6 3.2659 1.1032 -2.9084 17 6 2.6190 1.1756 -4.3014 18 8 1.6235 0.1792 -4.5424 19 6 3.6024 1.3214 -5.4341 20 1 3.8578 2.3031 -5.8045 21 6 4.1759 0.2012 -5.9975 22 7 3.8652 -0.9943 -5.5462 23 14 5.3943 0.3819 -7.4019 24 1 6.7684 0.5045 -6.8524 25 1 5.3173 -0.8127 -8.2807 26 1 5.0657 1.5974 -8.1890 27 6 2.0633 2.5061 -3.7753 28 1 -0.3633 0.4173 -0.9392 29 1 -0.3634 -1.0220 0.1083 30 1 -0.3633 0.6047 0.8309 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 0.7371 2.6772 1.1340 34 1 3.8639 0.8856 1.5918 35 1 5.0107 0.7251 3.7903 36 1 3.9736 1.7550 5.7696 37 1 4.2443 1.5811 -2.8589 38 1 3.2632 0.1016 -2.4784 39 1 1.9768 -0.6578 -4.8737 40 1 4.2684 -1.7823 -5.9428 41 1 1.0360 2.6999 -4.0838 42 1 2.7240 3.3545 -3.9539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349663628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:34 Heat of formation + Delta-G solvation = -31.395747 kcal Electronic energy + Delta-G solvation = -27459.673779 eV Core-core repulsion = 23466.278641 eV Total energy + Delta-G solvation = -3993.395137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76792 -41.09053 -39.56641 -37.60319 -37.42994 -35.90999 -34.23096 -34.10105 -32.84718 -30.87403 -30.28570 -28.12759 -26.92517 -26.63083 -24.57440 -24.07360 -23.02736 -21.49366 -19.97052 -19.49769 -18.87599 -18.31172 -17.76561 -17.27384 -17.07458 -16.79568 -16.70614 -15.96051 -15.89960 -15.45387 -15.33441 -15.12919 -14.90948 -14.71280 -14.43637 -13.93808 -13.81750 -13.70602 -13.39269 -13.26814 -12.92928 -12.79997 -12.77545 -12.70170 -12.62981 -12.30644 -12.23243 -12.21004 -12.02691 -11.71532 -11.35319 -10.95060 -10.65772 -10.60797 -10.42028 -10.21792 -9.62154 -8.68990 -8.26307 -6.42589 0.05682 0.34359 0.91124 1.43101 1.47990 1.52516 1.60082 1.67708 2.27569 2.42070 2.75123 2.95796 3.25670 3.58973 3.71569 3.75050 3.81674 3.88118 4.00669 4.12641 4.13562 4.24118 4.38545 4.45849 4.51761 4.62030 4.68516 4.77408 4.86117 4.88861 4.89501 4.95729 5.04878 5.17511 5.22298 5.25593 5.47939 5.74729 5.91205 5.93250 6.36305 6.62823 6.80694 6.84863 7.00604 7.31313 7.51560 8.79456 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.002823 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.265359 B = 9915.029371 C =10501.830496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.150 3.850 4 H 0.121 0.879 5 N -0.718 5.718 6 C 0.185 3.815 7 C -0.153 4.153 8 C -0.099 4.099 9 C 0.047 3.953 10 N -0.465 5.465 11 C 0.073 3.927 12 Cl -0.052 7.052 13 C 0.531 3.469 14 O -0.587 6.587 15 N -0.630 5.630 16 C 0.084 3.916 17 C 0.221 3.779 18 O -0.585 6.585 19 C -0.553 4.553 20 H 0.072 0.928 21 C 0.036 3.964 22 N -0.914 5.914 23 Si 0.966 3.034 24 H -0.270 1.270 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.105 3.895 28 H 0.026 0.974 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.407 0.593 34 H 0.161 0.839 35 H 0.182 0.818 36 H 0.191 0.809 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.390 0.610 40 H 0.277 0.723 41 H 0.049 0.951 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 -0.446 15.772 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.041 3.959 4 H 0.138 0.862 5 N -0.348 5.348 6 C 0.077 3.923 7 C -0.183 4.183 8 C -0.119 4.119 9 C -0.113 4.113 10 N -0.175 5.175 11 C -0.095 4.095 12 Cl -0.024 7.024 13 C 0.321 3.679 14 O -0.469 6.469 15 N -0.362 5.362 16 C -0.038 4.038 17 C 0.180 3.820 18 O -0.398 6.398 19 C -0.591 4.591 20 H 0.091 0.909 21 C -0.164 4.164 22 N -0.554 5.554 23 Si 0.792 3.208 24 H -0.195 1.195 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.017 4.017 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.245 0.755 34 H 0.178 0.822 35 H 0.199 0.801 36 H 0.208 0.792 37 H 0.117 0.883 38 H 0.091 0.909 39 H 0.246 0.754 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.991 0.604 16.742 17.018 hybrid contribution 0.320 -0.255 -1.892 1.936 sum 3.311 0.349 14.850 15.219 Atomic orbital electron populations 1.21652 0.95681 1.02273 1.00628 1.21904 0.96894 0.93356 1.04264 1.20727 1.00638 0.92434 0.82128 0.86173 1.44581 1.30766 1.54333 1.05148 1.18489 0.93016 0.95624 0.85148 1.21527 0.93148 1.02541 1.01098 1.22446 1.01306 0.96947 0.91176 1.23004 0.90640 0.96544 1.01103 1.66804 1.09965 1.15525 1.25191 1.21031 0.92997 1.05404 0.90080 1.98372 1.29654 1.76433 1.97954 1.20492 0.82537 0.81248 0.83632 1.90632 1.29216 1.41533 1.85521 1.49645 1.36226 1.42202 1.08176 1.24158 0.90541 0.93906 0.95242 1.19800 0.85793 0.85232 0.91184 1.86043 1.37140 1.28372 1.88253 1.21643 1.24653 0.94240 1.18525 0.90945 1.25686 0.97584 0.94644 0.98528 1.69305 1.44682 0.98499 1.42948 0.85421 0.79076 0.77561 0.78771 1.19496 1.21088 1.19825 1.23381 1.00777 0.98677 0.78906 0.95476 0.90925 0.92727 0.90478 0.88118 0.75502 0.82182 0.80098 0.79226 0.88321 0.90898 0.75440 0.91332 0.93189 0.87757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.48 71.98 0.68 -3.38 16 2 C -0.13 -3.11 5.86 30.59 0.18 -2.93 16 3 C 0.15 4.05 2.30 44.24 0.10 4.15 16 4 H 0.12 2.71 6.38 -2.39 -0.02 2.69 16 5 N -0.72 -19.28 4.28 -322.05 -1.38 -20.66 16 6 C 0.19 4.42 6.64 38.30 0.25 4.67 16 7 C -0.15 -2.69 9.24 22.58 0.21 -2.48 16 8 C -0.10 -1.30 10.10 22.34 0.23 -1.07 16 9 C 0.05 0.77 11.17 84.68 0.95 1.72 16 10 N -0.46 -11.24 10.33 -186.18 -1.92 -13.17 16 11 C 0.07 1.91 7.29 84.88 0.62 2.53 16 12 Cl -0.05 -1.40 27.77 -2.72 -0.08 -1.48 16 13 C 0.53 19.39 6.23 87.66 0.55 19.93 16 14 O -0.59 -25.26 16.60 -3.06 -0.05 -25.31 16 15 N -0.63 -23.87 3.69 -858.28 -3.16 -27.04 16 16 C 0.08 3.12 7.86 83.26 0.65 3.78 16 17 C 0.22 9.83 1.58 -11.12 -0.02 9.81 16 18 O -0.58 -28.77 13.55 -148.98 -2.02 -30.78 16 19 C -0.55 -25.75 8.70 25.60 0.22 -25.53 16 20 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 21 C 0.04 1.68 5.39 84.66 0.46 2.13 16 22 N -0.91 -43.01 11.01 21.45 0.24 -42.78 16 23 Si 0.97 37.13 29.54 68.60 2.03 39.16 16 24 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 25 H -0.29 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 27 C 0.11 4.31 8.02 83.17 0.67 4.98 16 28 H 0.03 0.92 7.39 -2.39 -0.02 0.90 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.53 7.39 -2.39 -0.02 1.51 16 31 H 0.08 2.06 7.34 -2.39 -0.02 2.05 16 32 H 0.10 1.97 8.04 -2.38 -0.02 1.95 16 33 H 0.41 12.49 6.42 -92.71 -0.60 11.90 16 34 H 0.16 2.24 6.29 -2.91 -0.02 2.22 16 35 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 36 H 0.19 1.79 8.06 -2.91 -0.02 1.76 16 37 H 0.10 3.36 8.10 -2.39 -0.02 3.34 16 38 H 0.07 2.62 7.34 -2.39 -0.02 2.60 16 39 H 0.39 19.42 6.33 -74.06 -0.47 18.96 16 40 H 0.28 12.38 8.31 -92.71 -0.77 11.61 16 41 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.10 3.85 8.10 -2.39 -0.02 3.83 16 Total: -1.00 -59.16 365.61 -0.59 -59.75 By element: Atomic # 1 Polarization: 43.96 SS G_CDS: 0.02 Total: 43.98 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 5.75 Total: 18.32 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -6.23 Total: -103.64 kcal Atomic # 8 Polarization: -54.02 SS G_CDS: -2.07 Total: -56.09 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -59.16 -0.59 -59.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349663628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.351 kcal (2) G-P(sol) polarization free energy of solvation -59.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds