Wall clock time and date at job start Tue Mar 31 2020 23:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 H 1.09004 * 109.46781 * 303.21294 * 3 2 1 5 5 N 1.46501 * 109.47338 * 63.21115 * 3 2 1 6 6 C 1.39774 * 120.00120 * 275.00272 * 5 3 2 7 7 C 1.39223 * 120.49589 * 359.97438 * 6 5 3 8 8 C 1.38565 * 118.37165 * 179.97438 * 7 6 5 9 9 C 1.38214 * 119.26805 * 359.97438 * 8 7 6 10 10 N 1.31898 * 120.94270 * 0.02562 * 9 8 7 11 11 C 1.31893 * 121.77349 * 359.67880 * 10 9 8 12 12 Cl 1.73606 * 119.68118 * 180.28976 * 11 10 9 13 13 C 1.50690 * 109.47271 * 183.21544 * 3 2 1 14 14 O 1.21290 * 120.00300 * 266.87496 * 13 3 2 15 15 N 1.34783 * 120.00582 * 86.87870 * 13 3 2 16 16 C 1.47578 * 134.49878 * 174.92040 * 15 13 3 17 17 C 1.53943 * 86.11890 * 155.35535 * 16 15 13 18 18 O 1.42899 * 113.74394 * 269.15738 * 17 16 15 19 19 C 1.50701 * 113.74251 * 137.95288 * 17 16 15 20 20 H 1.08002 * 119.99821 * 254.75104 * 19 17 16 21 21 C 1.37872 * 119.99907 * 75.01516 * 19 17 16 22 22 N 1.31513 * 120.00265 * 186.09395 * 21 19 17 23 23 Si 1.86807 * 120.00026 * 6.10381 * 21 19 17 24 24 H 1.48500 * 109.47066 * 93.03571 * 23 21 19 25 25 H 1.48501 * 109.47017 * 213.03639 * 23 21 19 26 26 H 1.48496 * 109.46878 * 333.03798 * 23 21 19 27 27 C 1.47812 * 134.44948 * 354.78523 * 15 13 3 28 28 H 1.09000 * 109.47260 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46773 * 299.99959 * 1 2 3 30 30 H 1.08997 * 109.47596 * 59.99611 * 1 2 3 31 31 H 1.09003 * 109.46773 * 240.00041 * 2 1 3 32 32 H 1.08993 * 109.47191 * 120.00108 * 2 1 3 33 33 H 0.96999 * 119.99742 * 94.99550 * 5 3 2 34 34 H 1.07993 * 120.81491 * 359.97438 * 7 6 5 35 35 H 1.08005 * 120.36338 * 179.97438 * 8 7 6 36 36 H 1.08007 * 119.52960 * 180.02562 * 9 8 7 37 37 H 1.09007 * 113.76369 * 41.05431 * 16 15 13 38 38 H 1.08995 * 113.86852 * 269.67290 * 16 15 13 39 39 H 0.96693 * 114.00640 * 172.03739 * 18 17 16 40 40 H 0.96997 * 120.00486 * 180.02562 * 22 21 19 41 41 H 1.09005 * 113.77048 * 90.38248 * 27 15 13 42 42 H 1.09000 * 113.83955 * 318.91761 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6304 1.9726 -0.8598 5 7 1.6159 2.1104 1.2330 6 6 0.3506 2.6994 1.3091 7 6 -0.5148 2.6578 0.2193 8 6 -1.7589 3.2553 0.3432 9 6 -2.0986 3.8679 1.5347 10 7 -1.2567 3.8908 2.5497 11 6 -0.0653 3.3296 2.4766 12 17 0.9969 3.3855 3.8486 13 6 3.5448 1.4432 -0.0797 14 8 4.2059 1.4812 0.9365 15 7 4.1562 1.4018 -1.2801 16 6 5.5596 1.4824 -1.7295 17 6 5.0959 0.7052 -2.9748 18 8 5.2000 -0.7135 -2.8394 19 6 5.6854 1.2171 -4.2638 20 1 5.0767 1.7940 -4.9444 21 6 7.0001 0.9444 -4.5768 22 7 7.5496 1.4893 -5.6402 23 14 8.0009 -0.1995 -3.4907 24 1 7.9147 -1.5847 -4.0188 25 1 9.4194 0.2401 -3.4834 26 1 7.4643 -0.1630 -2.1066 27 6 3.6895 1.2549 -2.6749 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.2132 2.1439 1.9965 34 1 -0.2237 2.1718 -0.7001 35 1 -2.4554 3.2424 -0.4822 36 1 -3.0674 4.3346 1.6360 37 1 6.2551 0.9280 -1.0993 38 1 5.8963 2.4965 -1.9446 39 1 4.7990 -1.2086 -3.5667 40 1 8.4744 1.2971 -5.8607 41 1 3.4739 2.2028 -3.1682 42 1 2.8948 0.5193 -2.7984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349663629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:37 Heat of formation + Delta-G solvation = -2.187612 kcal Electronic energy + Delta-G solvation = -27507.384554 eV Core-core repulsion = 23515.255976 eV Total energy + Delta-G solvation = -3992.128577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85358 -39.95872 -38.27524 -36.72393 -36.56004 -34.43314 -33.10503 -32.57872 -32.26750 -30.12945 -29.18313 -26.84503 -25.81629 -24.95276 -24.19313 -23.03864 -21.53333 -20.15613 -19.03486 -18.20160 -17.79846 -17.45020 -16.83181 -16.23660 -15.85798 -15.46145 -15.26800 -15.11078 -14.80896 -14.59323 -14.31035 -14.02410 -13.45159 -13.34622 -13.23157 -13.02239 -12.86735 -12.57975 -12.31771 -12.17868 -12.00924 -11.89970 -11.60337 -11.39630 -11.35429 -11.28007 -10.91522 -10.80665 -10.67503 -10.16966 -9.85468 -9.78817 -9.61767 -9.20121 -8.91645 -8.83952 -8.19882 -7.79847 -6.38193 -4.53772 0.80750 1.09499 1.75481 2.56563 2.88427 3.27984 3.32578 3.37666 3.50085 3.52135 4.28688 4.32330 4.35361 4.47678 4.66898 4.69658 4.79446 4.83310 4.86207 4.96968 5.05268 5.14276 5.18615 5.36963 5.45930 5.55591 5.69778 5.77382 5.82123 5.87708 5.89739 6.02368 6.06823 6.13733 6.28500 6.30479 6.66085 6.76104 7.20545 7.34416 7.61096 7.95696 8.05258 8.29722 8.54275 8.65494 9.22563 10.70740 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020649 B = 0.002888 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.651906 B = 9692.796274 C =10119.712286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.133 4.133 3 C 0.138 3.862 4 H 0.099 0.901 5 N -0.712 5.712 6 C 0.198 3.802 7 C -0.151 4.151 8 C -0.118 4.118 9 C 0.049 3.951 10 N -0.438 5.438 11 C 0.095 3.905 12 Cl -0.037 7.037 13 C 0.527 3.473 14 O -0.550 6.550 15 N -0.629 5.629 16 C 0.115 3.885 17 C 0.202 3.798 18 O -0.560 6.560 19 C -0.556 4.556 20 H 0.085 0.915 21 C 0.088 3.912 22 N -0.880 5.880 23 Si 0.900 3.100 24 H -0.280 1.280 25 H -0.304 1.304 26 H -0.251 1.251 27 C 0.076 3.924 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.415 0.585 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.160 0.840 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.372 0.628 40 H 0.270 0.730 41 H 0.092 0.908 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.224 0.320 8.910 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.172 4.172 3 C 0.029 3.971 4 H 0.117 0.883 5 N -0.343 5.343 6 C 0.088 3.912 7 C -0.182 4.182 8 C -0.139 4.139 9 C -0.111 4.111 10 N -0.148 5.148 11 C -0.075 4.075 12 Cl -0.008 7.008 13 C 0.315 3.685 14 O -0.429 6.429 15 N -0.363 5.363 16 C -0.007 4.007 17 C 0.162 3.838 18 O -0.367 6.367 19 C -0.593 4.593 20 H 0.103 0.897 21 C -0.119 4.119 22 N -0.515 5.515 23 Si 0.729 3.271 24 H -0.207 1.207 25 H -0.232 1.232 26 H -0.175 1.175 27 C -0.046 4.046 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.255 0.745 34 H 0.167 0.833 35 H 0.159 0.841 36 H 0.177 0.823 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.220 0.780 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.557 0.864 10.800 20.631 hybrid contribution 0.873 -1.007 -0.503 1.425 sum -16.683 -0.143 10.297 19.606 Atomic orbital electron populations 1.22141 0.94829 1.02234 1.01999 1.21938 0.96816 0.94452 1.03971 1.20836 0.92580 0.95096 0.88637 0.88322 1.44652 1.14061 1.59230 1.16368 1.18320 0.87059 0.92635 0.93149 1.21445 0.94282 1.03951 0.98510 1.22003 0.96387 0.96404 0.99097 1.22336 0.98866 1.01249 0.88671 1.66813 1.01370 1.14966 1.31671 1.20970 0.92837 1.04953 0.88730 1.98392 1.61976 1.97290 1.43178 1.19971 0.88904 0.76884 0.82744 1.90676 1.66535 1.51614 1.34059 1.50185 1.11338 1.69819 1.04917 1.23904 0.82394 1.00852 0.93509 1.20473 0.89974 0.79557 0.93836 1.86339 1.81350 1.18748 1.50218 1.21096 0.97576 1.36916 1.03724 0.89746 1.24999 0.97572 0.94549 0.94790 1.69927 1.14102 1.41418 1.26009 0.86524 0.77399 0.80598 0.82584 1.20654 1.23199 1.17535 1.24190 1.00675 1.01243 0.78536 0.92248 0.92025 0.92101 0.89943 0.90699 0.74460 0.83272 0.84088 0.82276 0.90541 0.88352 0.78033 0.92080 0.88952 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 8.21 37.16 0.31 -1.04 16 2 C -0.13 -1.46 5.60 -26.73 -0.15 -1.61 16 3 C 0.14 1.74 2.41 -69.09 -0.17 1.57 16 4 H 0.10 1.09 6.39 -51.93 -0.33 0.75 16 5 N -0.71 -9.11 5.10 -53.15 -0.27 -9.38 16 6 C 0.20 2.32 5.41 -83.57 -0.45 1.86 16 7 C -0.15 -1.41 6.84 -39.09 -0.27 -1.68 16 8 C -0.12 -0.92 10.10 -39.47 -0.40 -1.32 16 9 C 0.05 0.45 11.17 -17.53 -0.20 0.25 16 10 N -0.44 -5.38 10.33 -10.20 -0.11 -5.48 16 11 C 0.09 1.21 7.30 -17.23 -0.13 1.08 16 12 Cl -0.04 -0.46 27.76 -51.86 -1.44 -1.90 16 13 C 0.53 9.02 7.25 -10.99 -0.08 8.94 16 14 O -0.55 -11.25 16.77 5.55 0.09 -11.16 16 15 N -0.63 -11.07 3.61 -178.10 -0.64 -11.72 16 16 C 0.11 2.32 7.16 -2.97 -0.02 2.30 16 17 C 0.20 4.02 0.92 -90.84 -0.08 3.94 16 18 O -0.56 -10.91 10.56 -35.23 -0.37 -11.28 16 19 C -0.56 -13.24 9.16 -34.44 -0.32 -13.56 16 20 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 21 C 0.09 2.26 5.47 -17.82 -0.10 2.16 16 22 N -0.88 -24.34 13.96 55.43 0.77 -23.56 16 23 Si 0.90 20.89 25.83 -169.99 -4.39 16.50 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.25 -5.79 4.85 56.52 0.27 -5.51 16 27 C 0.08 1.21 7.91 -2.84 -0.02 1.18 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.60 5.46 -51.93 -0.28 0.31 16 30 H 0.06 0.44 6.22 -51.93 -0.32 0.11 16 31 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.42 5.92 6.50 -40.82 -0.27 5.65 16 34 H 0.15 1.17 4.19 -52.49 -0.22 0.95 16 35 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 36 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.08 1.67 6.73 -51.92 -0.35 1.32 16 38 H 0.10 1.95 8.09 -51.93 -0.42 1.53 16 39 H 0.37 5.94 9.10 45.56 0.41 6.35 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 41 H 0.09 1.39 8.09 -51.93 -0.42 0.97 16 42 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 353.67 15.07 5.33 5.33 Total: -1.00 -30.76 353.67 -7.51 -38.27 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.42 Total: 10.31 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.07 Total: 4.08 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.25 Total: -50.15 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.28 Total: -22.44 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.39 Total: 16.50 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.44 Total: -1.90 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.76 -7.51 -38.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349663629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.085 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds