Wall clock time and date at job start Tue Mar 31 2020 23:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 H 1.09004 * 109.46781 * 303.21294 * 3 2 1 5 5 N 1.46501 * 109.47338 * 63.21115 * 3 2 1 6 6 C 1.39774 * 120.00120 * 275.00272 * 5 3 2 7 7 C 1.39223 * 120.49589 * 359.97438 * 6 5 3 8 8 C 1.38565 * 118.37165 * 179.97438 * 7 6 5 9 9 C 1.38214 * 119.26805 * 359.97438 * 8 7 6 10 10 N 1.31898 * 120.94270 * 0.02562 * 9 8 7 11 11 C 1.31893 * 121.77349 * 359.67880 * 10 9 8 12 12 Cl 1.73606 * 119.68118 * 180.28976 * 11 10 9 13 13 C 1.50690 * 109.47271 * 183.21544 * 3 2 1 14 14 O 1.21290 * 120.00300 * 266.87496 * 13 3 2 15 15 N 1.34783 * 120.00582 * 86.87870 * 13 3 2 16 16 C 1.47578 * 134.49878 * 174.92040 * 15 13 3 17 17 C 1.53943 * 86.11890 * 155.35535 * 16 15 13 18 18 O 1.42899 * 113.74394 * 269.15738 * 17 16 15 19 19 C 1.50701 * 113.74251 * 137.95288 * 17 16 15 20 20 H 1.08002 * 119.99821 * 254.75104 * 19 17 16 21 21 C 1.37872 * 119.99907 * 75.01516 * 19 17 16 22 22 N 1.31513 * 120.00265 * 186.09395 * 21 19 17 23 23 Si 1.86807 * 120.00026 * 6.10381 * 21 19 17 24 24 H 1.48500 * 109.47066 * 93.03571 * 23 21 19 25 25 H 1.48501 * 109.47017 * 213.03639 * 23 21 19 26 26 H 1.48496 * 109.46878 * 333.03798 * 23 21 19 27 27 C 1.47812 * 134.44948 * 354.78523 * 15 13 3 28 28 H 1.09000 * 109.47260 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46773 * 299.99959 * 1 2 3 30 30 H 1.08997 * 109.47596 * 59.99611 * 1 2 3 31 31 H 1.09003 * 109.46773 * 240.00041 * 2 1 3 32 32 H 1.08993 * 109.47191 * 120.00108 * 2 1 3 33 33 H 0.96999 * 119.99742 * 94.99550 * 5 3 2 34 34 H 1.07993 * 120.81491 * 359.97438 * 7 6 5 35 35 H 1.08005 * 120.36338 * 179.97438 * 8 7 6 36 36 H 1.08007 * 119.52960 * 180.02562 * 9 8 7 37 37 H 1.09007 * 113.76369 * 41.05431 * 16 15 13 38 38 H 1.08995 * 113.86852 * 269.67290 * 16 15 13 39 39 H 0.96693 * 114.00640 * 172.03739 * 18 17 16 40 40 H 0.96997 * 120.00486 * 180.02562 * 22 21 19 41 41 H 1.09005 * 113.77048 * 90.38248 * 27 15 13 42 42 H 1.09000 * 113.83955 * 318.91761 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6304 1.9726 -0.8598 5 7 1.6159 2.1104 1.2330 6 6 0.3506 2.6994 1.3091 7 6 -0.5148 2.6578 0.2193 8 6 -1.7589 3.2553 0.3432 9 6 -2.0986 3.8679 1.5347 10 7 -1.2567 3.8908 2.5497 11 6 -0.0653 3.3296 2.4766 12 17 0.9969 3.3855 3.8486 13 6 3.5448 1.4432 -0.0797 14 8 4.2059 1.4812 0.9365 15 7 4.1562 1.4018 -1.2801 16 6 5.5596 1.4824 -1.7295 17 6 5.0959 0.7052 -2.9748 18 8 5.2000 -0.7135 -2.8394 19 6 5.6854 1.2171 -4.2638 20 1 5.0767 1.7940 -4.9444 21 6 7.0001 0.9444 -4.5768 22 7 7.5496 1.4893 -5.6402 23 14 8.0009 -0.1995 -3.4907 24 1 7.9147 -1.5847 -4.0188 25 1 9.4194 0.2401 -3.4834 26 1 7.4643 -0.1630 -2.1066 27 6 3.6895 1.2549 -2.6749 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.2132 2.1439 1.9965 34 1 -0.2237 2.1718 -0.7001 35 1 -2.4554 3.2424 -0.4822 36 1 -3.0674 4.3346 1.6360 37 1 6.2551 0.9280 -1.0993 38 1 5.8963 2.4965 -1.9446 39 1 4.7990 -1.2086 -3.5667 40 1 8.4744 1.2971 -5.8607 41 1 3.4739 2.2028 -3.1682 42 1 2.8948 0.5193 -2.7984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349663629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:36 Heat of formation + Delta-G solvation = -26.167254 kcal Electronic energy + Delta-G solvation = -27508.424389 eV Core-core repulsion = 23515.255976 eV Total energy + Delta-G solvation = -3993.168413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.83319 -41.14335 -39.58745 -37.63742 -37.59462 -35.96241 -34.51758 -33.92996 -33.00557 -31.13476 -30.45127 -28.09669 -27.27923 -26.35352 -24.95614 -23.78819 -22.59142 -21.53591 -20.26141 -19.67931 -19.05348 -18.39390 -17.91923 -17.27180 -17.02509 -16.85877 -16.57357 -16.29561 -15.83710 -15.78812 -15.30150 -15.16023 -14.92306 -14.72621 -14.32255 -14.12638 -14.01535 -13.81017 -13.61602 -13.26241 -13.11892 -12.94098 -12.74681 -12.61177 -12.53386 -12.36814 -12.26546 -12.10552 -11.90770 -11.62926 -11.24087 -10.97465 -10.77832 -10.57671 -10.41832 -10.34381 -9.66563 -8.65691 -8.37674 -6.51562 0.07745 0.36367 0.92459 1.33665 1.40618 1.46108 1.60945 1.68460 2.25568 2.36573 2.76676 2.96017 3.13190 3.47062 3.59435 3.75702 3.81812 3.87864 3.89558 4.03752 4.15235 4.30332 4.36509 4.44345 4.48637 4.54211 4.66672 4.71625 4.77695 4.80139 4.89310 5.05189 5.09267 5.11317 5.21665 5.34653 5.44543 5.49634 5.93558 6.05157 6.33876 6.61239 6.71955 6.87385 6.94290 7.13493 7.30328 8.74904 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020649 B = 0.002888 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.651906 B = 9692.796274 C =10119.712286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.151 3.849 4 H 0.125 0.875 5 N -0.723 5.723 6 C 0.186 3.814 7 C -0.148 4.148 8 C -0.103 4.103 9 C 0.047 3.953 10 N -0.468 5.468 11 C 0.069 3.931 12 Cl -0.056 7.056 13 C 0.522 3.478 14 O -0.591 6.591 15 N -0.629 5.629 16 C 0.104 3.896 17 C 0.196 3.804 18 O -0.566 6.566 19 C -0.539 4.539 20 H 0.066 0.934 21 C 0.045 3.955 22 N -0.926 5.926 23 Si 0.948 3.052 24 H -0.277 1.277 25 H -0.316 1.316 26 H -0.251 1.251 27 C 0.094 3.906 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.405 0.595 34 H 0.171 0.829 35 H 0.184 0.816 36 H 0.189 0.811 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.389 0.611 40 H 0.268 0.732 41 H 0.105 0.895 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.789 -0.243 7.970 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.042 3.958 4 H 0.142 0.858 5 N -0.353 5.353 6 C 0.078 3.922 7 C -0.178 4.178 8 C -0.123 4.123 9 C -0.113 4.113 10 N -0.178 5.178 11 C -0.099 4.099 12 Cl -0.028 7.028 13 C 0.311 3.689 14 O -0.473 6.473 15 N -0.362 5.362 16 C -0.019 4.019 17 C 0.155 3.845 18 O -0.375 6.375 19 C -0.577 4.577 20 H 0.084 0.916 21 C -0.157 4.157 22 N -0.564 5.564 23 Si 0.778 3.222 24 H -0.203 1.203 25 H -0.245 1.245 26 H -0.175 1.175 27 C -0.027 4.027 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.242 0.758 34 H 0.188 0.812 35 H 0.201 0.799 36 H 0.205 0.795 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.239 0.761 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.170 0.286 9.854 23.353 hybrid contribution 1.851 -0.784 -0.225 2.023 sum -19.319 -0.499 9.628 21.592 Atomic orbital electron populations 1.22099 0.92624 1.03126 1.02605 1.21935 0.98590 0.92919 1.03320 1.20837 0.88813 0.96606 0.89552 0.85773 1.44647 1.14583 1.60148 1.15965 1.18465 0.86978 0.93062 0.93736 1.21798 0.94285 1.03465 0.98219 1.22452 0.96192 0.94100 0.99530 1.23000 0.99297 1.00526 0.88472 1.66791 1.01722 1.15927 1.33398 1.21044 0.93330 1.06700 0.88836 1.98373 1.62720 1.97451 1.44280 1.20841 0.90869 0.75471 0.81679 1.90657 1.67962 1.53204 1.35432 1.50134 1.10130 1.69909 1.05982 1.23768 0.83855 1.00492 0.93760 1.20352 0.92835 0.79800 0.91488 1.86294 1.81921 1.18272 1.51041 1.21359 0.96793 1.35035 1.04484 0.91605 1.25573 0.98899 0.95797 0.95470 1.70024 1.14474 1.43844 1.28082 0.85759 0.75738 0.79358 0.81384 1.20290 1.24504 1.17532 1.24146 0.99105 1.02571 0.76883 0.91320 0.93100 0.89629 0.89240 0.92766 0.75768 0.81208 0.79902 0.79455 0.92763 0.88766 0.76131 0.92283 0.87707 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.21 71.98 0.59 -1.37 16 2 C -0.13 -2.45 5.60 30.59 0.17 -2.28 16 3 C 0.15 3.43 2.41 44.24 0.11 3.53 16 4 H 0.12 2.17 6.39 -2.38 -0.02 2.15 16 5 N -0.72 -17.71 5.10 -322.06 -1.64 -19.35 16 6 C 0.19 4.00 5.41 38.30 0.21 4.20 16 7 C -0.15 -2.13 6.84 22.58 0.15 -1.97 16 8 C -0.10 -1.09 10.10 22.34 0.23 -0.87 16 9 C 0.05 0.71 11.17 84.68 0.95 1.65 16 10 N -0.47 -10.79 10.33 -186.18 -1.92 -12.72 16 11 C 0.07 1.70 7.30 84.88 0.62 2.32 16 12 Cl -0.06 -1.48 27.76 -2.72 -0.08 -1.55 16 13 C 0.52 17.23 7.25 87.65 0.64 17.86 16 14 O -0.59 -24.50 16.77 -3.06 -0.05 -24.55 16 15 N -0.63 -20.99 3.61 -839.61 -3.03 -24.02 16 16 C 0.10 4.16 7.16 86.49 0.62 4.78 16 17 C 0.20 7.45 0.92 -10.88 -0.01 7.44 16 18 O -0.57 -20.76 10.56 -148.98 -1.57 -22.33 16 19 C -0.54 -25.25 9.16 25.60 0.23 -25.02 16 20 H 0.07 3.30 8.06 -2.91 -0.02 3.28 16 21 C 0.04 2.29 5.47 84.65 0.46 2.76 16 22 N -0.93 -52.05 13.96 21.45 0.30 -51.75 16 23 Si 0.95 43.47 25.83 68.60 1.77 45.24 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.32 -14.98 7.11 99.48 0.71 -14.28 16 26 H -0.25 -11.42 4.85 99.48 0.48 -10.93 16 27 C 0.09 2.65 7.91 86.44 0.68 3.34 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.82 5.46 -2.39 -0.01 0.80 16 30 H 0.09 0.72 6.22 -2.39 -0.01 0.70 16 31 H 0.09 1.59 8.10 -2.39 -0.02 1.57 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.40 11.72 6.50 -92.71 -0.60 11.12 16 34 H 0.17 1.68 4.19 -2.91 -0.01 1.66 16 35 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 36 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.05 2.39 6.73 -2.38 -0.02 2.37 16 38 H 0.09 3.77 8.09 -2.39 -0.02 3.75 16 39 H 0.39 11.24 9.10 -74.06 -0.67 10.56 16 40 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 41 H 0.10 2.75 8.09 -2.38 -0.02 2.73 16 42 H 0.11 2.33 8.10 -2.39 -0.02 2.31 16 Total: -1.00 -69.97 353.67 -0.99 -70.96 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.41 Total: 23.70 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 5.65 Total: 16.37 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -6.30 Total: -107.84 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.63 Total: -46.88 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.77 Total: 45.24 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.55 kcal Total: -69.97 -0.99 -70.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349663629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.791 kcal (2) G-P(sol) polarization free energy of solvation -69.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds