Wall clock time and date at job start Tue Mar 31 2020 22:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86796 * 119.99788 * 2 1 4 4 H 1.48503 * 109.46762 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47333 * 300.00085 * 3 2 1 6 6 H 1.48505 * 109.47127 * 60.00111 * 3 2 1 7 7 C 1.38655 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99783 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.35759 * 116.99532 * 185.05586 * 9 7 2 11 11 C 1.38894 * 120.06856 * 354.48695 * 10 9 7 12 12 C 1.38083 * 119.92829 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06742 * 359.74629 * 12 11 10 14 14 C 1.38280 * 120.13886 * 0.50422 * 13 12 11 15 15 C 1.50703 * 119.96298 * 179.77009 * 14 13 12 16 16 N 1.46503 * 109.46869 * 269.72498 * 15 14 13 17 17 C 1.34774 * 119.99709 * 180.02562 * 16 15 14 18 18 O 1.21522 * 120.00286 * 359.72851 * 17 16 15 19 19 C 1.48124 * 120.00138 * 179.97438 * 17 16 15 20 20 N 1.33474 * 125.32105 * 0.02744 * 19 17 16 21 21 C 1.32500 * 109.75162 * 179.97438 * 20 19 17 22 22 N 1.33988 * 132.33857 * 180.02562 * 21 20 19 23 23 C 1.31266 * 120.87911 * 179.97438 * 22 21 20 24 24 C 1.40170 * 120.35239 * 0.02562 * 23 22 21 25 25 C 1.35681 * 119.27742 * 359.97435 * 24 23 22 26 26 N 1.36170 * 119.02478 * 0.02562 * 25 24 23 27 27 N 1.31985 * 125.32807 * 179.71934 * 19 17 16 28 28 C 1.38122 * 120.06672 * 359.49603 * 14 13 12 29 29 H 0.97006 * 120.00536 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03884 * 359.97438 * 11 10 9 31 31 H 1.07998 * 119.96414 * 179.97438 * 12 11 10 32 32 H 1.07996 * 119.92836 * 180.27724 * 13 12 11 33 33 H 1.09002 * 109.46580 * 149.72714 * 15 14 13 34 34 H 1.08992 * 109.47089 * 29.72530 * 15 14 13 35 35 H 0.96999 * 119.99892 * 0.02562 * 16 15 14 36 36 H 1.07992 * 119.82078 * 179.97438 * 23 22 21 37 37 H 1.08006 * 120.35718 * 179.97438 * 24 23 22 38 38 H 1.07993 * 120.48839 * 180.02562 * 25 24 23 39 39 H 1.08000 * 120.03295 * 180.22762 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3463 0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8907 2.3964 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3346 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4573 -3.4394 0.0957 12 6 4.2024 -4.5968 0.2054 13 6 3.5685 -5.8196 0.3324 14 6 2.1874 -5.8883 0.3395 15 6 1.5009 -7.2233 0.4729 16 7 1.2724 -7.7900 -0.8586 17 6 0.6672 -8.9874 -0.9865 18 8 0.3156 -9.5993 0.0029 19 6 0.4356 -9.5603 -2.3327 20 7 0.7817 -8.9848 -3.4862 21 6 0.4301 -9.7641 -4.4985 22 7 0.5583 -9.6322 -5.8257 23 6 0.1207 -10.5635 -6.6407 24 6 -0.4920 -11.7177 -6.1335 25 6 -0.6272 -11.8619 -4.7912 26 7 -0.1634 -10.8789 -3.9710 27 7 -0.1402 -10.7221 -2.5790 28 6 1.4365 -4.7342 0.2301 29 1 -0.4851 0.8401 0.0004 30 1 3.9528 -2.4845 0.0007 31 1 5.2811 -4.5467 0.1957 32 1 4.1534 -6.7229 0.4225 33 1 0.5454 -7.0912 0.9805 34 1 2.1299 -7.8990 1.0523 35 1 1.5566 -7.3034 -1.6481 36 1 0.2325 -10.4393 -7.7076 37 1 -0.8525 -12.4838 -6.8040 38 1 -1.0958 -12.7434 -4.3793 39 1 0.3579 -4.7882 0.2394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001360342913.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:51 Heat of formation + Delta-G solvation = 113.216700 kcal Electronic energy + Delta-G solvation = -26688.520966 eV Core-core repulsion = 22600.289201 eV Total energy + Delta-G solvation = -4088.231765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.36576 -40.04135 -39.17230 -38.70160 -36.79974 -35.11414 -34.62443 -32.32066 -32.01351 -31.20549 -30.75933 -29.15020 -26.93334 -25.60161 -25.16096 -24.39578 -23.38568 -21.69709 -20.83737 -20.66446 -19.04170 -18.71778 -18.02464 -17.43717 -17.15157 -16.91899 -16.43335 -15.83527 -15.46664 -15.06064 -15.04158 -14.54414 -14.41405 -14.03873 -13.83211 -13.59885 -13.52794 -13.22582 -13.20212 -12.75122 -12.53108 -12.41766 -12.16207 -11.66374 -11.38181 -10.96708 -10.81725 -10.76468 -10.68996 -10.57177 -10.46908 -10.41006 -10.25622 -9.38375 -9.36760 -9.13300 -8.87263 -8.23823 -7.30408 -6.46661 -4.05966 -0.17636 0.10391 1.23356 1.44523 1.89024 2.29340 2.60869 2.72954 2.98030 3.12176 3.13309 3.15312 3.18880 3.66279 3.71880 3.94810 4.11540 4.29739 4.51656 4.60839 4.72141 4.92001 5.08566 5.18152 5.25740 5.46129 5.51165 5.55203 5.64060 5.72426 5.82373 5.89740 6.09570 6.26336 6.28604 6.56746 6.83684 6.85340 7.01595 7.16710 7.19335 7.29804 7.37889 7.49223 7.73112 7.95818 7.97571 8.98764 9.67648 10.71199 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.002135 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.483242 B =13114.263441 C =14055.317617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.223 4.223 12 C -0.076 4.076 13 C -0.192 4.192 14 C -0.076 4.076 15 C 0.168 3.832 16 N -0.690 5.690 17 C 0.608 3.392 18 O -0.511 6.511 19 C 0.245 3.755 20 N -0.494 5.494 21 C 0.442 3.558 22 N -0.446 5.446 23 C 0.209 3.791 24 C -0.219 4.219 25 C 0.172 3.828 26 N -0.329 5.329 27 N -0.268 5.268 28 C -0.168 4.168 29 H 0.270 0.730 30 H 0.128 0.872 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.417 0.583 36 H 0.194 0.806 37 H 0.178 0.822 38 H 0.186 0.814 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.742 -23.349 -13.033 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.096 3.904 11 C -0.242 4.242 12 C -0.095 4.095 13 C -0.211 4.211 14 C -0.077 4.077 15 C 0.046 3.954 16 N -0.342 5.342 17 C 0.387 3.613 18 O -0.384 6.384 19 C -0.039 4.039 20 N -0.228 5.228 21 C 0.082 3.918 22 N -0.160 5.160 23 C 0.022 3.978 24 C -0.244 4.244 25 C 0.036 3.964 26 N -0.110 5.110 27 N -0.102 5.102 28 C -0.188 4.188 29 H 0.080 0.920 30 H 0.146 0.854 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.254 0.746 36 H 0.211 0.789 37 H 0.195 0.805 38 H 0.203 0.797 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.435 -22.750 -11.689 25.581 hybrid contribution 0.194 0.248 -0.529 0.616 sum 0.630 -22.501 -12.219 25.612 Atomic orbital electron populations 1.70049 1.05969 1.27625 1.45922 1.25301 0.95851 0.98869 0.96513 0.85640 0.79133 0.80342 0.78268 1.19078 1.20125 1.20132 1.21375 0.91827 0.80755 1.52869 0.88964 1.83988 1.34262 1.11404 1.78298 1.19310 0.90265 0.88074 0.92723 1.21256 0.93832 0.99126 1.10000 1.20743 0.98608 0.92228 0.97886 1.20485 0.93262 0.97230 1.10133 1.19181 0.93532 0.92527 1.02433 1.20321 1.00730 0.91746 0.82579 1.45922 1.58230 1.18724 1.11298 1.16298 0.79372 0.81888 0.83730 1.90855 1.50732 1.60338 1.36440 1.24268 0.94946 0.89982 0.94669 1.70889 1.27886 1.28704 0.95337 1.22708 0.93226 0.83775 0.92102 1.68127 1.20579 1.29757 0.97582 1.23704 0.86599 0.86659 1.00850 1.22043 1.06099 1.02441 0.93797 1.22252 0.92896 0.92003 0.89298 1.49064 1.38203 1.16511 1.07225 1.78945 1.26981 1.19061 0.85241 1.20091 0.99492 0.89843 1.09347 0.92023 0.85415 0.87213 0.87385 0.90069 0.90160 0.74598 0.78924 0.80483 0.79680 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.21 13.67 55.48 0.76 -24.45 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.44 29.55 -169.99 -5.02 15.42 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.39 -10.86 9.49 30.89 0.29 -10.56 16 8 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 9 O -0.18 -4.97 9.76 0.02 0.00 -4.97 16 10 C 0.15 3.55 6.65 -39.11 -0.26 3.29 16 11 C -0.22 -4.72 9.17 -39.40 -0.36 -5.08 16 12 C -0.08 -1.36 10.04 -39.61 -0.40 -1.76 16 13 C -0.19 -3.19 9.70 -39.53 -0.38 -3.57 16 14 C -0.08 -1.31 5.25 -104.65 -0.55 -1.86 16 15 C 0.17 2.51 5.80 -5.19 -0.03 2.48 16 16 N -0.69 -10.26 5.55 -62.34 -0.35 -10.60 16 17 C 0.61 9.70 7.84 -12.20 -0.10 9.61 16 18 O -0.51 -9.25 17.07 5.35 0.09 -9.16 16 19 C 0.25 3.78 7.92 -156.79 -1.24 2.54 16 20 N -0.49 -7.55 10.89 -12.24 -0.13 -7.69 16 21 C 0.44 5.70 8.98 -323.05 -2.90 2.80 16 22 N -0.45 -4.53 10.48 -13.79 -0.14 -4.67 16 23 C 0.21 0.88 11.27 -17.07 -0.19 0.69 16 24 C -0.22 -0.47 10.06 -39.77 -0.40 -0.87 16 25 C 0.17 0.89 11.32 -16.54 -0.19 0.70 16 26 N -0.33 -3.63 3.91 -13.80 -0.05 -3.69 16 27 N -0.27 -3.87 12.78 32.02 0.41 -3.46 16 28 C -0.17 -3.45 9.65 -39.40 -0.38 -3.83 16 29 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.13 2.71 5.64 -52.48 -0.30 2.42 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 34 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.42 6.14 8.13 -40.82 -0.33 5.80 16 36 H 0.19 -0.04 8.06 -52.49 -0.42 -0.47 16 37 H 0.18 -0.42 8.06 -52.48 -0.42 -0.84 16 38 H 0.19 0.32 8.06 -52.49 -0.42 -0.10 16 39 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -37.16 355.40 -9.68 -46.85 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -3.41 Total: 5.53 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -7.18 Total: -4.44 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.49 Total: -54.56 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.09 Total: -14.14 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.16 -9.68 -46.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360342913.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.063 kcal (2) G-P(sol) polarization free energy of solvation -37.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds