Wall clock time and date at job start Tue Mar 31 2020 22:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86796 * 119.99788 * 2 1 4 4 H 1.48503 * 109.46762 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47333 * 300.00085 * 3 2 1 6 6 H 1.48505 * 109.47127 * 60.00111 * 3 2 1 7 7 C 1.38655 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99783 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.35759 * 116.99532 * 185.05586 * 9 7 2 11 11 C 1.38894 * 120.06856 * 354.48695 * 10 9 7 12 12 C 1.38083 * 119.92829 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06742 * 359.74629 * 12 11 10 14 14 C 1.38280 * 120.13886 * 0.50422 * 13 12 11 15 15 C 1.50703 * 119.96298 * 179.77009 * 14 13 12 16 16 N 1.46503 * 109.46869 * 269.72498 * 15 14 13 17 17 C 1.34774 * 119.99709 * 180.02562 * 16 15 14 18 18 O 1.21522 * 120.00286 * 359.72851 * 17 16 15 19 19 C 1.48124 * 120.00138 * 179.97438 * 17 16 15 20 20 N 1.33474 * 125.32105 * 0.02744 * 19 17 16 21 21 C 1.32500 * 109.75162 * 179.97438 * 20 19 17 22 22 N 1.33988 * 132.33857 * 180.02562 * 21 20 19 23 23 C 1.31266 * 120.87911 * 179.97438 * 22 21 20 24 24 C 1.40170 * 120.35239 * 0.02562 * 23 22 21 25 25 C 1.35681 * 119.27742 * 359.97435 * 24 23 22 26 26 N 1.36170 * 119.02478 * 0.02562 * 25 24 23 27 27 N 1.31985 * 125.32807 * 179.71934 * 19 17 16 28 28 C 1.38122 * 120.06672 * 359.49603 * 14 13 12 29 29 H 0.97006 * 120.00536 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03884 * 359.97438 * 11 10 9 31 31 H 1.07998 * 119.96414 * 179.97438 * 12 11 10 32 32 H 1.07996 * 119.92836 * 180.27724 * 13 12 11 33 33 H 1.09002 * 109.46580 * 149.72714 * 15 14 13 34 34 H 1.08992 * 109.47089 * 29.72530 * 15 14 13 35 35 H 0.96999 * 119.99892 * 0.02562 * 16 15 14 36 36 H 1.07992 * 119.82078 * 179.97438 * 23 22 21 37 37 H 1.08006 * 120.35718 * 179.97438 * 24 23 22 38 38 H 1.07993 * 120.48839 * 180.02562 * 25 24 23 39 39 H 1.08000 * 120.03295 * 180.22762 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3463 0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8907 2.3964 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3346 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4573 -3.4394 0.0957 12 6 4.2024 -4.5968 0.2054 13 6 3.5685 -5.8196 0.3324 14 6 2.1874 -5.8883 0.3395 15 6 1.5009 -7.2233 0.4729 16 7 1.2724 -7.7900 -0.8586 17 6 0.6672 -8.9874 -0.9865 18 8 0.3156 -9.5993 0.0029 19 6 0.4356 -9.5603 -2.3327 20 7 0.7817 -8.9848 -3.4862 21 6 0.4301 -9.7641 -4.4985 22 7 0.5583 -9.6322 -5.8257 23 6 0.1207 -10.5635 -6.6407 24 6 -0.4920 -11.7177 -6.1335 25 6 -0.6272 -11.8619 -4.7912 26 7 -0.1634 -10.8789 -3.9710 27 7 -0.1402 -10.7221 -2.5790 28 6 1.4365 -4.7342 0.2301 29 1 -0.4851 0.8401 0.0004 30 1 3.9528 -2.4845 0.0007 31 1 5.2811 -4.5467 0.1957 32 1 4.1534 -6.7229 0.4225 33 1 0.5454 -7.0912 0.9805 34 1 2.1299 -7.8990 1.0523 35 1 1.5566 -7.3034 -1.6481 36 1 0.2325 -10.4393 -7.7076 37 1 -0.8525 -12.4838 -6.8040 38 1 -1.0958 -12.7434 -4.3793 39 1 0.3579 -4.7882 0.2394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001360342913.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:50 Heat of formation + Delta-G solvation = 87.290206 kcal Electronic energy + Delta-G solvation = -26689.645223 eV Core-core repulsion = 22600.289201 eV Total energy + Delta-G solvation = -4089.356022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.14048 -41.22483 -40.68153 -39.61570 -38.47650 -36.07912 -35.68271 -34.29103 -32.81741 -32.20193 -31.88241 -30.79634 -28.15958 -27.29127 -26.15278 -25.24611 -24.25253 -23.27428 -22.45503 -21.77217 -19.95984 -19.62546 -19.30831 -18.88805 -18.30748 -17.98973 -17.19983 -16.89172 -16.81897 -16.61223 -16.12169 -16.07089 -15.54248 -15.48632 -15.27437 -14.95601 -14.38630 -14.26495 -14.02978 -13.96243 -13.90477 -13.70837 -13.42068 -13.21744 -13.04909 -12.59031 -12.39321 -12.28599 -12.08593 -11.83540 -11.66172 -11.21235 -11.08833 -10.99610 -10.82173 -10.36980 -10.07686 -9.79073 -9.04147 -8.47006 -6.15531 -0.74374 -0.52295 0.28382 0.54777 0.61720 0.70698 1.35620 1.43557 1.54112 1.65215 1.87390 2.15736 2.17600 2.31637 2.76698 2.92543 3.14407 3.26188 3.36771 3.47221 3.77553 3.94869 4.07942 4.22266 4.28880 4.35471 4.38154 4.44938 4.50884 4.59198 4.72122 4.78352 4.95283 4.99685 5.02540 5.12101 5.22820 5.24756 5.60722 5.68911 5.70445 6.00867 6.04024 6.16075 6.25915 6.53833 6.76282 6.97697 7.78130 8.76468 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.002135 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.483242 B =13114.263441 C =14055.317617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.249 1.249 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.232 6.232 10 C 0.111 3.889 11 C -0.231 4.231 12 C -0.070 4.070 13 C -0.166 4.166 14 C -0.063 4.063 15 C 0.172 3.828 16 N -0.684 5.684 17 C 0.612 3.388 18 O -0.539 6.539 19 C 0.226 3.774 20 N -0.534 5.534 21 C 0.425 3.575 22 N -0.490 5.490 23 C 0.219 3.781 24 C -0.175 4.175 25 C 0.141 3.859 26 N -0.329 5.329 27 N -0.295 5.295 28 C -0.180 4.180 29 H 0.272 0.728 30 H 0.122 0.878 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.418 0.582 36 H 0.243 0.757 37 H 0.239 0.761 38 H 0.219 0.781 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.640 -26.504 -15.443 30.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.172 1.172 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.488 4.488 8 H 0.122 0.878 9 O -0.139 6.139 10 C 0.061 3.939 11 C -0.250 4.250 12 C -0.088 4.088 13 C -0.185 4.185 14 C -0.064 4.064 15 C 0.051 3.949 16 N -0.335 5.335 17 C 0.393 3.607 18 O -0.414 6.414 19 C -0.058 4.058 20 N -0.270 5.270 21 C 0.065 3.935 22 N -0.206 5.206 23 C 0.036 3.964 24 C -0.198 4.198 25 C 0.008 3.992 26 N -0.110 5.110 27 N -0.131 5.131 28 C -0.200 4.200 29 H 0.081 0.919 30 H 0.140 0.860 31 H 0.168 0.832 32 H 0.168 0.832 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.255 0.745 36 H 0.259 0.741 37 H 0.255 0.745 38 H 0.235 0.765 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.356 -25.993 -14.158 29.692 hybrid contribution -0.361 0.719 -0.065 0.807 sum 1.996 -25.274 -14.223 29.070 Atomic orbital electron populations 1.70200 1.08095 1.28713 1.49011 1.26616 0.96849 1.02837 0.95930 0.84513 0.78340 0.74783 0.78469 1.17233 1.19436 1.19466 1.21881 0.92588 0.81332 1.52967 0.87832 1.83954 1.35950 1.12579 1.81427 1.19845 0.91695 0.87834 0.94529 1.21391 0.92943 1.00476 1.10207 1.21173 1.00508 0.91076 0.96033 1.21030 0.92977 0.98457 1.06003 1.19378 0.94068 0.92294 1.00622 1.20313 1.00927 0.90778 0.82922 1.45814 1.58028 1.18515 1.11187 1.16370 0.78669 0.81667 0.83995 1.90818 1.51978 1.61116 1.37492 1.23910 0.96680 0.90799 0.94393 1.70709 1.29773 1.30489 0.95981 1.22851 0.93673 0.84154 0.92849 1.68250 1.23340 1.32526 0.96531 1.24793 0.83567 0.85698 1.02318 1.22805 1.01965 1.02101 0.92937 1.23288 0.93665 0.92182 0.90103 1.49102 1.38339 1.17444 1.06141 1.78729 1.27647 1.18936 0.87752 1.20243 0.99503 0.90254 1.09976 0.91892 0.86019 0.83176 0.83210 0.90384 0.87878 0.74507 0.74085 0.74504 0.76471 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.36 13.67 21.61 0.30 -57.06 16 2 C -0.03 -1.44 5.49 84.83 0.47 -0.97 16 3 Si 1.02 43.19 29.55 68.60 2.03 45.22 16 4 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.41 -24.04 9.49 67.92 0.64 -23.40 16 8 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 9 O -0.23 -14.08 9.76 -22.84 -0.22 -14.31 16 10 C 0.11 5.53 6.65 22.57 0.15 5.68 16 11 C -0.23 -9.83 9.17 22.39 0.21 -9.63 16 12 C -0.07 -2.30 10.04 22.25 0.22 -2.08 16 13 C -0.17 -4.99 9.70 22.30 0.22 -4.77 16 14 C -0.06 -2.12 5.25 -19.88 -0.10 -2.22 16 15 C 0.17 5.02 5.80 85.63 0.50 5.52 16 16 N -0.68 -20.59 5.55 -469.43 -2.60 -23.19 16 17 C 0.61 20.21 7.84 86.87 0.68 20.89 16 18 O -0.54 -20.04 17.07 -3.79 -0.06 -20.10 16 19 C 0.23 7.29 7.92 137.39 1.09 8.37 16 20 N -0.53 -17.03 10.89 -192.62 -2.10 -19.13 16 21 C 0.42 10.97 8.98 261.57 2.35 13.32 16 22 N -0.49 -9.24 10.48 -197.55 -2.07 -11.31 16 23 C 0.22 0.93 11.27 85.25 0.96 1.89 16 24 C -0.17 0.18 10.06 22.15 0.22 0.41 16 25 C 0.14 1.02 11.32 83.43 0.94 1.97 16 26 N -0.33 -7.06 3.91 -197.59 -0.77 -7.83 16 27 N -0.29 -8.74 12.78 -52.60 -0.67 -9.41 16 28 C -0.18 -7.72 9.65 22.39 0.22 -7.50 16 29 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 30 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 31 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 32 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.08 2.36 8.08 -2.39 -0.02 2.34 16 34 H 0.10 2.60 8.08 -2.39 -0.02 2.58 16 35 H 0.42 12.58 8.13 -92.71 -0.75 11.83 16 36 H 0.24 -1.55 8.06 -2.91 -0.02 -1.57 16 37 H 0.24 -3.06 8.06 -2.91 -0.02 -3.08 16 38 H 0.22 -0.04 8.06 -2.91 -0.02 -0.06 16 39 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -92.75 355.40 2.96 -89.79 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.39 Total: 19.87 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 8.76 Total: 7.48 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -7.92 Total: -127.94 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.29 Total: -34.41 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -92.75 2.96 -89.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360342913.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.076 kcal (2) G-P(sol) polarization free energy of solvation -92.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds