Wall clock time and date at job start Tue Mar 31 2020 22:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99960 * 2 1 4 4 O 1.20827 * 119.99807 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99827 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46931 * 179.97438 * 5 3 2 7 7 N 1.46491 * 109.46896 * 180.02562 * 6 5 3 8 8 C 1.36577 * 119.99951 * 266.61634 * 7 6 5 9 9 H 1.07997 * 119.99822 * 43.42960 * 8 7 6 10 10 C 1.39241 * 120.00152 * 223.43055 * 8 7 6 11 11 N 1.31242 * 119.99762 * 14.56365 * 10 8 7 12 12 Si 1.86797 * 119.99953 * 194.56147 * 10 8 7 13 13 H 1.48501 * 109.46913 * 64.99885 * 12 10 8 14 14 H 1.48498 * 109.47169 * 184.99672 * 12 10 8 15 15 H 1.48496 * 109.47179 * 305.00009 * 12 10 8 16 16 C 1.34776 * 120.00432 * 86.62461 * 7 6 5 17 17 O 1.21682 * 120.00526 * 174.98302 * 16 7 6 18 18 C 1.47056 * 119.99665 * 354.97376 * 16 7 6 19 19 C 1.37736 * 125.79446 * 174.29155 * 18 16 7 20 20 C 1.39929 * 106.85838 * 180.02562 * 19 18 16 21 21 C 1.50698 * 126.57654 * 180.02562 * 20 19 18 22 22 C 1.37712 * 106.84904 * 0.02562 * 20 19 18 23 23 C 1.46995 * 125.79741 * 180.02562 * 22 20 19 24 24 O 1.21559 * 119.99702 * 4.94002 * 23 22 20 25 25 O 1.34846 * 120.00241 * 184.66157 * 23 22 20 26 26 C 1.45196 * 116.99881 * 175.55236 * 25 23 22 27 27 O 1.34555 * 125.79279 * 354.59869 * 18 16 7 28 28 H 1.08998 * 109.47166 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47379 * 299.99686 * 1 2 3 30 30 H 1.09003 * 109.47176 * 60.00462 * 1 2 3 31 31 H 1.08999 * 109.46877 * 60.00075 * 5 3 2 32 32 H 1.08990 * 109.47205 * 299.99921 * 5 3 2 33 33 H 1.08996 * 109.46796 * 59.99731 * 6 5 3 34 34 H 1.08999 * 109.46998 * 300.00009 * 6 5 3 35 35 H 0.96997 * 119.99868 * 184.84094 * 11 10 8 36 36 H 1.08007 * 126.57592 * 359.97438 * 19 18 16 37 37 H 1.08998 * 109.47762 * 269.97678 * 21 20 19 38 38 H 1.08995 * 109.47236 * 29.98367 * 21 20 19 39 39 H 1.09011 * 109.46836 * 149.97466 * 21 20 19 40 40 H 1.08996 * 109.47403 * 300.00153 * 26 25 23 41 41 H 1.09003 * 109.47285 * 60.00427 * 26 25 23 42 42 H 1.09003 * 109.47034 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7421 -0.0002 7 7 5.4631 2.8187 -0.0002 8 6 6.1414 2.9247 1.1804 9 1 5.8546 2.3151 2.0245 10 6 7.2025 3.8188 1.2959 11 7 7.3747 4.7532 0.3905 12 14 8.3810 3.6883 2.7394 13 1 9.1235 2.4049 2.6577 14 1 9.3420 4.8197 2.6977 15 1 7.6143 3.7366 4.0102 16 6 6.1397 2.7847 -1.1653 17 8 7.3466 2.9399 -1.1729 18 6 5.4194 2.5598 -2.4275 19 6 5.9694 2.6120 -3.6893 20 6 4.9371 2.3389 -4.5935 21 6 5.0502 2.2827 -6.0952 22 6 3.7979 2.1315 -3.8481 23 6 2.4664 1.8127 -4.3831 24 8 2.3197 1.6232 -5.5749 25 8 1.4087 1.7249 -3.5513 26 6 0.1085 1.5053 -4.1591 27 8 4.1100 2.2739 -2.5462 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7809 0.8907 33 1 3.6100 3.2367 0.8893 34 1 3.6108 3.2356 -0.8907 35 1 8.1527 5.3311 0.4319 36 1 6.9998 2.8240 -3.9339 37 1 4.8591 3.2718 -6.5114 38 1 6.0536 1.9596 -6.3722 39 1 4.3195 1.5756 -6.4884 40 1 -0.1194 2.3279 -4.8368 41 1 0.1214 0.5685 -4.7162 42 1 -0.6527 1.4549 -3.3805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001438601758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:03 Heat of formation + Delta-G solvation = -167.602326 kcal Electronic energy + Delta-G solvation = -31165.349021 eV Core-core repulsion = 26693.045607 eV Total energy + Delta-G solvation = -4472.303414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.35136 -40.18722 -40.08301 -38.30809 -36.55753 -36.33368 -34.90112 -33.71150 -32.52244 -30.51526 -30.20351 -28.36046 -27.56341 -27.12105 -25.56888 -24.10901 -22.93448 -21.42333 -20.54765 -20.22596 -19.44103 -18.11003 -17.50116 -17.08978 -16.90187 -16.72149 -16.36907 -16.30504 -15.62635 -15.57295 -14.90331 -14.46942 -14.12167 -13.76366 -13.62430 -13.35390 -13.30050 -13.14946 -12.97942 -12.82657 -12.67632 -12.55011 -12.26242 -12.13402 -12.11234 -11.84862 -11.57836 -11.39686 -10.96397 -10.87610 -10.86543 -10.66639 -10.57422 -10.55407 -10.31177 -10.18521 -9.35358 -9.09963 -8.56983 -8.25575 -7.43983 -6.29081 -4.11828 0.88436 2.27550 2.42338 2.54228 2.92430 2.97911 3.20542 3.26297 3.29702 3.31911 4.09394 4.40216 4.57615 4.90817 4.91888 4.98274 5.01661 5.07628 5.13489 5.16195 5.19565 5.26433 5.38992 5.46163 5.50210 5.59843 5.73218 5.78873 5.82857 5.93871 5.96774 6.09157 6.17699 6.32592 6.38459 6.56868 6.62206 6.70970 7.07833 7.39370 7.72111 7.98935 8.04214 8.72421 8.83989 9.30565 9.92044 10.74093 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010997 B = 0.004913 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.460911 B = 5697.310772 C = 7882.903678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.504 6.504 5 C -0.126 4.126 6 C 0.116 3.884 7 N -0.424 5.424 8 C -0.341 4.341 9 H 0.091 0.909 10 C 0.062 3.938 11 N -0.806 5.806 12 Si 0.919 3.081 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.519 3.481 17 O -0.495 6.495 18 C 0.034 3.966 19 C -0.186 4.186 20 C -0.068 4.068 21 C -0.095 4.095 22 C -0.101 4.101 23 C 0.557 3.443 24 O -0.497 6.497 25 O -0.346 6.346 26 C 0.039 3.961 27 O -0.138 6.138 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.271 0.729 36 H 0.164 0.836 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.841 -7.520 -6.127 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.281 6.281 3 C 0.314 3.686 4 O -0.391 6.391 5 C -0.165 4.165 6 C -0.008 4.008 7 N -0.143 5.143 8 C -0.468 4.468 9 H 0.108 0.892 10 C -0.151 4.151 11 N -0.439 5.439 12 Si 0.745 3.255 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.199 1.199 16 C 0.306 3.694 17 O -0.372 6.372 18 C -0.022 4.022 19 C -0.206 4.206 20 C -0.071 4.071 21 C -0.152 4.152 22 C -0.152 4.152 23 C 0.403 3.597 24 O -0.387 6.387 25 O -0.262 6.262 26 C -0.055 4.055 27 O -0.033 6.033 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.181 0.819 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.675 -7.026 -6.242 14.988 hybrid contribution 0.166 0.076 0.352 0.397 sum -11.509 -6.950 -5.890 14.678 Atomic orbital electron populations 1.23160 0.77249 1.03023 1.02279 1.86525 1.22803 1.34188 1.84548 1.23801 0.92055 0.81034 0.71724 1.90638 1.67185 1.36166 1.45094 1.21929 0.86695 1.02149 1.05739 1.21502 0.83443 0.92230 1.03674 1.43114 1.02902 1.62831 1.05493 1.19186 1.15954 1.21624 0.89994 0.89158 1.25381 0.99019 0.93077 0.97655 1.69823 1.26408 1.14194 1.33500 0.86154 0.80248 0.78158 0.80959 1.19783 1.20950 1.19874 1.16593 0.86247 0.86076 0.80470 1.90736 1.12218 1.50728 1.83505 1.24310 0.79704 0.99777 0.98456 1.21882 1.00968 1.07849 0.89927 1.20722 0.90709 0.98310 0.97312 1.20458 1.03176 1.03193 0.88359 1.20752 0.92771 1.18770 0.82884 1.19320 0.82865 0.73511 0.83993 1.90845 1.84707 1.47545 1.15652 1.86709 1.16735 1.82798 1.39933 1.23277 0.80732 1.01948 0.99556 1.84441 1.26203 1.67562 1.25140 0.88676 0.92180 0.92155 0.88040 0.87456 0.89551 0.90485 0.91839 0.81856 0.90740 0.90994 0.89762 0.91757 0.91732 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.20 10.57 -39.25 -0.41 -5.61 16 3 C 0.47 7.77 7.96 36.01 0.29 8.05 16 4 O -0.50 -9.28 15.73 -18.75 -0.29 -9.57 16 5 C -0.13 -2.16 5.57 -27.88 -0.16 -2.31 16 6 C 0.12 2.35 4.21 -4.04 -0.02 2.33 16 7 N -0.42 -10.19 2.51 -116.19 -0.29 -10.49 16 8 C -0.34 -8.70 9.24 -15.07 -0.14 -8.83 16 9 H 0.09 2.14 7.88 -52.49 -0.41 1.73 16 10 C 0.06 1.63 4.52 -17.43 -0.08 1.55 16 11 N -0.81 -22.71 11.18 55.51 0.62 -22.09 16 12 Si 0.92 20.35 29.58 -169.99 -5.03 15.32 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 16 C 0.52 12.92 7.01 -12.69 -0.09 12.84 16 17 O -0.49 -13.92 14.10 5.21 0.07 -13.84 16 18 C 0.03 0.72 6.59 -36.19 -0.24 0.48 16 19 C -0.19 -3.48 10.60 -39.13 -0.41 -3.90 16 20 C -0.07 -1.15 6.21 -104.18 -0.65 -1.80 16 21 C -0.10 -1.27 9.87 36.00 0.36 -0.91 16 22 C -0.10 -1.80 7.21 -36.23 -0.26 -2.06 16 23 C 0.56 9.11 7.94 34.28 0.27 9.38 16 24 O -0.50 -8.15 14.51 -19.31 -0.28 -8.43 16 25 O -0.35 -5.23 10.58 -42.31 -0.45 -5.67 16 26 C 0.04 0.40 10.59 101.05 1.07 1.47 16 27 O -0.14 -2.67 5.73 3.90 0.02 -2.65 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.10 1.75 6.58 -51.93 -0.34 1.41 16 32 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 33 H 0.09 1.76 7.97 -51.93 -0.41 1.34 16 34 H 0.08 1.62 5.72 -51.93 -0.30 1.32 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.16 2.91 8.06 -52.48 -0.42 2.49 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.14 6.36 -51.92 -0.33 0.81 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -32.41 367.99 -4.64 -37.05 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.16 Total: 2.69 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 1.01 Total: 17.75 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.33 Total: -32.57 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -1.34 Total: -45.78 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.41 -4.64 -37.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438601758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.548 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds