Wall clock time and date at job start Tue Mar 31 2020 22:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99960 * 2 1 4 4 O 1.20827 * 119.99807 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99827 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46931 * 179.97438 * 5 3 2 7 7 N 1.46491 * 109.46896 * 180.02562 * 6 5 3 8 8 C 1.36577 * 119.99951 * 266.61634 * 7 6 5 9 9 H 1.07997 * 119.99822 * 43.42960 * 8 7 6 10 10 C 1.39241 * 120.00152 * 223.43055 * 8 7 6 11 11 N 1.31242 * 119.99762 * 14.56365 * 10 8 7 12 12 Si 1.86797 * 119.99953 * 194.56147 * 10 8 7 13 13 H 1.48501 * 109.46913 * 64.99885 * 12 10 8 14 14 H 1.48498 * 109.47169 * 184.99672 * 12 10 8 15 15 H 1.48496 * 109.47179 * 305.00009 * 12 10 8 16 16 C 1.34776 * 120.00432 * 86.62461 * 7 6 5 17 17 O 1.21682 * 120.00526 * 174.98302 * 16 7 6 18 18 C 1.47056 * 119.99665 * 354.97376 * 16 7 6 19 19 C 1.37736 * 125.79446 * 174.29155 * 18 16 7 20 20 C 1.39929 * 106.85838 * 180.02562 * 19 18 16 21 21 C 1.50698 * 126.57654 * 180.02562 * 20 19 18 22 22 C 1.37712 * 106.84904 * 0.02562 * 20 19 18 23 23 C 1.46995 * 125.79741 * 180.02562 * 22 20 19 24 24 O 1.21559 * 119.99702 * 4.94002 * 23 22 20 25 25 O 1.34846 * 120.00241 * 184.66157 * 23 22 20 26 26 C 1.45196 * 116.99881 * 175.55236 * 25 23 22 27 27 O 1.34555 * 125.79279 * 354.59869 * 18 16 7 28 28 H 1.08998 * 109.47166 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47379 * 299.99686 * 1 2 3 30 30 H 1.09003 * 109.47176 * 60.00462 * 1 2 3 31 31 H 1.08999 * 109.46877 * 60.00075 * 5 3 2 32 32 H 1.08990 * 109.47205 * 299.99921 * 5 3 2 33 33 H 1.08996 * 109.46796 * 59.99731 * 6 5 3 34 34 H 1.08999 * 109.46998 * 300.00009 * 6 5 3 35 35 H 0.96997 * 119.99868 * 184.84094 * 11 10 8 36 36 H 1.08007 * 126.57592 * 359.97438 * 19 18 16 37 37 H 1.08998 * 109.47762 * 269.97678 * 21 20 19 38 38 H 1.08995 * 109.47236 * 29.98367 * 21 20 19 39 39 H 1.09011 * 109.46836 * 149.97466 * 21 20 19 40 40 H 1.08996 * 109.47403 * 300.00153 * 26 25 23 41 41 H 1.09003 * 109.47285 * 60.00427 * 26 25 23 42 42 H 1.09003 * 109.47034 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7421 -0.0002 7 7 5.4631 2.8187 -0.0002 8 6 6.1414 2.9247 1.1804 9 1 5.8546 2.3151 2.0245 10 6 7.2025 3.8188 1.2959 11 7 7.3747 4.7532 0.3905 12 14 8.3810 3.6883 2.7394 13 1 9.1235 2.4049 2.6577 14 1 9.3420 4.8197 2.6977 15 1 7.6143 3.7366 4.0102 16 6 6.1397 2.7847 -1.1653 17 8 7.3466 2.9399 -1.1729 18 6 5.4194 2.5598 -2.4275 19 6 5.9694 2.6120 -3.6893 20 6 4.9371 2.3389 -4.5935 21 6 5.0502 2.2827 -6.0952 22 6 3.7979 2.1315 -3.8481 23 6 2.4664 1.8127 -4.3831 24 8 2.3197 1.6232 -5.5749 25 8 1.4087 1.7249 -3.5513 26 6 0.1085 1.5053 -4.1591 27 8 4.1100 2.2739 -2.5462 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7809 0.8907 33 1 3.6100 3.2367 0.8893 34 1 3.6108 3.2356 -0.8907 35 1 8.1527 5.3311 0.4319 36 1 6.9998 2.8240 -3.9339 37 1 4.8591 3.2718 -6.5114 38 1 6.0536 1.9596 -6.3722 39 1 4.3195 1.5756 -6.4884 40 1 -0.1194 2.3279 -4.8368 41 1 0.1214 0.5685 -4.7162 42 1 -0.6527 1.4549 -3.3805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438601758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:02 Heat of formation + Delta-G solvation = -186.823629 kcal Electronic energy + Delta-G solvation = -31166.182519 eV Core-core repulsion = 26693.045607 eV Total energy + Delta-G solvation = -4473.136912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.84370 -41.46786 -41.31805 -40.11710 -37.76872 -37.61074 -36.64815 -35.13655 -34.36590 -32.06091 -31.74624 -29.45325 -28.62233 -28.30748 -27.22401 -25.63988 -24.45710 -22.82279 -21.97361 -21.63627 -21.07029 -19.44835 -18.92762 -18.76823 -18.11985 -18.05410 -17.68339 -17.51991 -17.16274 -16.91817 -16.76184 -16.05248 -15.52854 -15.27201 -15.05330 -14.77132 -14.53940 -14.35567 -14.24100 -14.14587 -14.04145 -13.89637 -13.56536 -13.47050 -13.34839 -13.13877 -12.95237 -12.85279 -12.72777 -12.70698 -12.20436 -12.03879 -11.91100 -11.78192 -11.70803 -11.53480 -10.99611 -10.76372 -10.50725 -9.77626 -9.36494 -8.24260 -6.12192 -0.55563 0.78721 1.12095 1.23861 1.45809 1.52667 1.56795 1.63109 1.74404 1.86082 2.31863 2.57074 2.90602 3.17010 3.57847 3.60233 3.78786 3.83123 3.97244 4.16999 4.20323 4.29469 4.30779 4.36815 4.39447 4.40616 4.49839 4.55915 4.65117 4.74611 4.75389 4.76864 4.90709 4.94289 5.07769 5.12033 5.31639 5.39250 5.44007 5.62427 6.08093 6.46835 6.77305 6.82202 6.95532 7.40031 8.03314 8.79617 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010997 B = 0.004913 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.460911 B = 5697.310772 C = 7882.903678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.480 3.520 4 O -0.527 6.527 5 C -0.117 4.117 6 C 0.123 3.877 7 N -0.436 5.436 8 C -0.361 4.361 9 H 0.104 0.896 10 C 0.013 3.987 11 N -0.852 5.852 12 Si 0.982 3.018 13 H -0.274 1.274 14 H -0.288 1.288 15 H -0.254 1.254 16 C 0.517 3.483 17 O -0.539 6.539 18 C 0.001 3.999 19 C -0.172 4.172 20 C -0.065 4.065 21 C -0.092 4.092 22 C -0.102 4.102 23 C 0.561 3.439 24 O -0.495 6.495 25 O -0.359 6.359 26 C 0.029 3.971 27 O -0.140 6.140 28 H 0.131 0.869 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.266 0.734 36 H 0.170 0.830 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.683 -9.094 -6.920 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.323 3.677 4 O -0.416 6.416 5 C -0.156 4.156 6 C -0.001 4.001 7 N -0.155 5.155 8 C -0.487 4.487 9 H 0.121 0.879 10 C -0.195 4.195 11 N -0.486 5.486 12 Si 0.806 3.194 13 H -0.200 1.200 14 H -0.214 1.214 15 H -0.178 1.178 16 C 0.304 3.696 17 O -0.420 6.420 18 C -0.055 4.055 19 C -0.193 4.193 20 C -0.067 4.067 21 C -0.148 4.148 22 C -0.153 4.153 23 C 0.406 3.594 24 O -0.386 6.386 25 O -0.275 6.275 26 C -0.063 4.063 27 O -0.035 6.035 28 H 0.149 0.851 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.138 0.862 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.188 0.812 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.580 -8.631 -7.017 17.554 hybrid contribution 0.478 0.459 0.430 0.790 sum -13.102 -8.172 -6.587 16.788 Atomic orbital electron populations 1.23558 0.74728 1.05588 1.02653 1.86494 1.25180 1.32522 1.83893 1.23454 0.91558 0.81414 0.71253 1.90632 1.67553 1.37054 1.46356 1.21695 0.87869 0.99718 1.06327 1.21413 0.81402 0.94435 1.02808 1.43283 1.04247 1.62755 1.05196 1.19596 1.16550 1.21718 0.90881 0.87883 1.26295 1.00642 0.92625 0.99964 1.69951 1.26926 1.15669 1.36089 0.85178 0.78096 0.77534 0.78600 1.19970 1.21369 1.17776 1.16954 0.86170 0.84784 0.81644 1.90684 1.14073 1.52472 1.84746 1.23614 0.80804 1.03376 0.97721 1.22102 1.01685 1.05981 0.89526 1.21092 0.89434 0.97185 0.98948 1.20571 1.04643 1.04116 0.85454 1.21339 0.94136 1.17450 0.82370 1.19087 0.82776 0.73537 0.83963 1.90844 1.84712 1.47495 1.15524 1.86692 1.17993 1.82371 1.40431 1.23677 0.78911 1.02866 1.00848 1.84396 1.25237 1.67710 1.26186 0.85054 0.91948 0.91737 0.88148 0.86188 0.90135 0.91511 0.92498 0.81242 0.89324 0.88823 0.89595 0.91036 0.90517 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -9.64 10.57 -51.38 -0.54 -10.19 16 3 C 0.48 15.31 7.96 71.24 0.57 15.88 16 4 O -0.53 -19.00 15.73 21.96 0.35 -18.65 16 5 C -0.12 -4.00 5.57 29.85 0.17 -3.83 16 6 C 0.12 5.11 4.21 86.38 0.36 5.48 16 7 N -0.44 -21.65 2.51 -639.74 -1.60 -23.26 16 8 C -0.36 -18.85 9.24 84.20 0.78 -18.07 16 9 H 0.10 4.93 7.88 -2.91 -0.02 4.91 16 10 C 0.01 0.71 4.52 85.02 0.38 1.09 16 11 N -0.85 -50.05 11.18 21.71 0.24 -49.80 16 12 Si 0.98 42.63 29.58 68.60 2.03 44.66 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 15 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 16 C 0.52 26.70 7.01 86.56 0.61 27.31 16 17 O -0.54 -31.70 14.10 -4.29 -0.06 -31.76 16 18 C 0.00 0.02 6.59 24.47 0.16 0.19 16 19 C -0.17 -6.44 10.60 22.56 0.24 -6.20 16 20 C -0.06 -2.07 6.21 -19.58 -0.12 -2.19 16 21 C -0.09 -2.18 9.87 71.24 0.70 -1.48 16 22 C -0.10 -3.52 7.21 24.44 0.18 -3.34 16 23 C 0.56 17.26 7.94 70.12 0.56 17.82 16 24 O -0.49 -14.95 14.51 19.64 0.28 -14.67 16 25 O -0.36 -10.10 10.58 -56.23 -0.59 -10.70 16 26 C 0.03 0.52 10.59 113.37 1.20 1.72 16 27 O -0.14 -5.41 5.73 -7.97 -0.05 -5.45 16 28 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 30 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 31 H 0.10 3.46 6.58 -2.39 -0.02 3.44 16 32 H 0.12 3.74 8.14 -2.39 -0.02 3.73 16 33 H 0.08 3.38 7.97 -2.39 -0.02 3.36 16 34 H 0.07 2.90 5.72 -2.39 -0.01 2.89 16 35 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.17 6.04 8.06 -2.91 -0.02 6.02 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.09 2.06 6.36 -2.38 -0.02 2.04 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 42 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -72.34 367.99 8.10 -64.25 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 1.07 Total: 19.51 kcal Atomic # 6 Polarization: 29.09 SS G_CDS: 6.98 Total: 36.07 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -1.36 Total: -73.06 kcal Atomic # 8 Polarization: -90.81 SS G_CDS: -0.61 Total: -91.42 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -72.34 8.10 -64.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438601758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.578 kcal (2) G-P(sol) polarization free energy of solvation -72.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds