Wall clock time and date at job start Tue Mar 31 2020 22:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37997 * 119.55299 * 2 1 4 4 C 1.39912 * 118.99797 * 179.97438 * 3 2 1 5 5 C 1.47926 * 120.92373 * 179.97438 * 4 3 2 6 6 N 1.30854 * 125.50309 * 179.97438 * 5 4 3 7 7 C 1.35135 * 108.53386 * 179.97438 * 6 5 4 8 8 C 1.47471 * 126.32342 * 180.02562 * 7 6 5 9 9 O 1.21627 * 120.00255 * 179.97438 * 8 7 6 10 10 N 1.34783 * 119.99805 * 359.97271 * 8 7 6 11 11 C 1.40546 * 120.00038 * 180.02562 * 10 8 7 12 12 C 1.40660 * 126.08262 * 0.02562 * 11 10 8 13 13 N 1.30904 * 108.38924 * 180.02562 * 12 11 10 14 14 N 1.40068 * 108.40954 * 0.02562 * 13 12 11 15 15 C 1.37319 * 126.06993 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00011 * 179.97438 * 15 14 13 17 17 C 1.38988 * 119.99836 * 359.97211 * 15 14 13 18 18 N 1.31290 * 120.00029 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99913 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47069 * 59.99548 * 19 17 15 21 21 H 1.48501 * 109.47260 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46932 * 300.00062 * 19 17 15 23 23 C 1.35684 * 126.08609 * 179.71882 * 11 10 8 24 24 C 1.36316 * 107.35892 * 0.02562 * 7 6 5 25 25 O 1.34251 * 107.06745 * 359.77538 * 24 7 6 26 26 C 1.39951 * 118.15512 * 359.97438 * 4 3 2 27 27 C 1.37962 * 118.99540 * 0.02562 * 26 4 3 28 28 N 1.31904 * 119.55022 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47489 * 270.01667 * 1 2 3 30 30 H 1.09002 * 109.47455 * 30.02575 * 1 2 3 31 31 H 1.09010 * 109.46818 * 150.02081 * 1 2 3 32 32 H 1.08004 * 120.49566 * 359.95481 * 3 2 1 33 33 H 0.96996 * 120.00060 * 0.02562 * 10 8 7 34 34 H 1.08001 * 125.80599 * 359.96874 * 12 11 10 35 35 H 0.97004 * 120.00205 * 180.02562 * 18 17 15 36 36 H 1.08005 * 126.24700 * 359.97438 * 23 11 10 37 37 H 1.07999 * 126.46917 * 180.02562 * 24 7 6 38 38 H 1.07997 * 120.50459 * 180.02562 * 26 4 3 39 39 H 1.07999 * 119.54824 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1876 1.2004 0.0000 4 6 3.5867 1.1869 0.0005 5 6 4.3591 2.4484 0.0000 6 7 5.6644 2.5403 0.0009 7 6 6.0030 3.8485 -0.0006 8 6 7.3721 4.3965 -0.0008 9 8 7.5454 5.6004 -0.0026 10 7 8.4315 3.5632 0.0012 11 6 9.7363 4.0854 0.0016 12 6 10.0831 5.4486 0.0006 13 7 11.3888 5.5426 0.0008 14 7 11.9254 4.2488 0.0013 15 6 13.2604 3.9273 0.0022 16 1 13.5664 2.8915 0.0030 17 6 14.2179 4.9348 0.0020 18 7 13.8459 6.1939 0.0015 19 14 16.0339 4.4974 0.0025 20 1 16.3514 3.7004 -1.2097 21 1 16.8430 5.7426 0.0028 22 1 16.3510 3.7013 1.2153 23 6 10.8857 3.3644 0.0089 24 6 4.8453 4.5682 -0.0019 25 8 3.8331 3.6863 -0.0062 26 6 4.2351 -0.0534 0.0016 27 6 3.4755 -1.2051 0.0016 28 7 2.1575 -1.1475 0.0005 29 1 -0.3634 0.0003 1.0276 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5136 32 1 1.6484 2.1362 -0.0007 33 1 8.2934 2.6032 0.0024 34 1 9.3900 6.2769 -0.0011 35 1 14.5141 6.8971 0.0010 36 1 10.9638 2.2872 0.0158 37 1 4.7587 5.6447 -0.0036 38 1 5.3137 -0.1081 0.0025 39 1 3.9666 -2.1669 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442399384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:32 Heat of formation + Delta-G solvation = 113.614664 kcal Electronic energy + Delta-G solvation = -26679.399364 eV Core-core repulsion = 22591.184856 eV Total energy + Delta-G solvation = -4088.214508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.69302 -40.58063 -39.89467 -38.51989 -35.28465 -34.26613 -33.98571 -33.12531 -33.09851 -30.33298 -29.91291 -28.15717 -27.85709 -25.27526 -24.77826 -24.02890 -23.12798 -21.39945 -21.00630 -20.35939 -19.43801 -18.37675 -17.51657 -17.11165 -16.96040 -16.50527 -16.22524 -15.95536 -15.47254 -15.24798 -14.91287 -14.54268 -14.40487 -14.08594 -13.94904 -13.75757 -13.42803 -13.19327 -12.97192 -12.89775 -12.69388 -12.14539 -11.78813 -11.69611 -11.47015 -11.25922 -11.12357 -10.99503 -10.72986 -10.57043 -10.20886 -10.01877 -9.54686 -9.42880 -9.19126 -8.94542 -8.84437 -8.08708 -6.72867 -6.57506 -4.24608 0.11369 0.64964 1.15306 2.04716 2.12977 2.94856 3.03877 3.08228 3.20248 3.26442 3.37666 3.56462 3.74067 3.84260 3.85763 4.29451 4.42287 4.48264 4.51728 4.62353 4.67308 4.89353 5.00664 5.02503 5.08710 5.15881 5.19705 5.23647 5.35132 5.49923 5.63105 5.69345 5.80352 6.17136 6.23448 6.42811 6.84415 6.92176 7.00971 7.19605 7.22639 7.50909 7.83224 8.12777 8.23844 8.56512 8.76881 9.34942 9.63783 10.38364 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.001942 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.591295 B =14415.739182 C =15496.182519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.130 3.870 3 C -0.146 4.146 4 C 0.039 3.961 5 C 0.218 3.782 6 N -0.434 5.434 7 C -0.047 4.047 8 C 0.579 3.421 9 O -0.531 6.531 10 N -0.599 5.599 11 C -0.064 4.064 12 C -0.030 4.030 13 N -0.260 5.260 14 N -0.140 5.140 15 C -0.322 4.322 16 H 0.117 0.883 17 C 0.046 3.954 18 N -0.769 5.769 19 Si 0.935 3.065 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.267 1.267 23 C -0.080 4.080 24 C 0.017 3.983 25 O -0.188 6.188 26 C -0.133 4.133 27 C 0.109 3.891 28 N -0.477 5.477 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.405 0.595 34 H 0.177 0.823 35 H 0.276 0.724 36 H 0.147 0.853 37 H 0.238 0.762 38 H 0.153 0.847 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.504 -11.378 0.020 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.008 4.008 3 C -0.167 4.167 4 C 0.030 3.970 5 C 0.013 3.987 6 N -0.165 5.165 7 C -0.170 4.170 8 C 0.364 3.636 9 O -0.409 6.409 10 N -0.239 5.239 11 C -0.169 4.169 12 C -0.205 4.205 13 N -0.091 5.091 14 N 0.092 4.908 15 C -0.455 4.455 16 H 0.134 0.866 17 C -0.171 4.171 18 N -0.395 5.395 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.231 4.231 24 C -0.057 4.057 25 O -0.073 6.073 26 C -0.154 4.154 27 C -0.047 4.047 28 N -0.187 5.187 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.162 0.838 33 H 0.240 0.760 34 H 0.194 0.806 35 H 0.086 0.914 36 H 0.165 0.835 37 H 0.254 0.746 38 H 0.171 0.829 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -21.343 -10.757 0.011 23.901 hybrid contribution 0.189 0.166 0.013 0.252 sum -21.154 -10.591 0.024 23.657 Atomic orbital electron populations 1.20745 0.88193 1.03821 1.03435 1.21221 0.97344 0.87564 0.94630 1.22055 0.92858 1.00422 1.01406 1.17525 0.91818 0.87420 1.00263 1.23432 0.87335 0.84236 1.03669 1.70673 1.10872 1.19487 1.15480 1.21870 0.96515 0.88503 1.10140 1.16487 0.81566 0.85904 0.79643 1.90729 1.84533 1.13940 1.51711 1.42257 1.03533 1.09317 1.68810 1.17258 0.82069 0.93282 1.24341 1.24120 0.93812 0.94905 1.07708 1.78261 1.06507 0.98591 1.25754 1.44562 1.04385 1.02987 1.38826 1.19851 0.77332 0.94879 1.53417 0.86572 1.25650 1.01338 0.94686 0.95448 1.70204 1.35117 0.99187 1.35035 0.85885 0.80155 0.78551 0.79501 1.19129 1.20110 1.19136 1.21264 0.86860 0.95311 1.19643 1.25504 0.83706 0.96432 1.00067 1.84420 1.37484 1.16280 1.69111 1.22246 1.02810 0.91007 0.99321 1.22768 0.88897 0.98445 0.94630 1.67488 1.10372 1.29333 1.11542 0.90079 0.90438 0.90124 0.83844 0.76028 0.80645 0.91358 0.83528 0.74613 0.82925 0.81562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.52 10.16 36.00 0.37 -0.15 16 2 C 0.13 1.03 6.78 -82.65 -0.56 0.47 16 3 C -0.15 -1.18 9.44 -39.04 -0.37 -1.55 16 4 C 0.04 0.38 5.91 -104.66 -0.62 -0.24 16 5 C 0.22 2.55 7.91 -14.00 -0.11 2.44 16 6 N -0.43 -5.89 10.70 -8.37 -0.09 -5.98 16 7 C -0.05 -0.69 6.97 -83.34 -0.58 -1.27 16 8 C 0.58 10.70 7.79 -12.50 -0.10 10.60 16 9 O -0.53 -11.21 14.03 5.25 0.07 -11.13 16 10 N -0.60 -11.41 5.46 -10.95 -0.06 -11.47 16 11 C -0.06 -1.50 6.90 -83.86 -0.58 -2.08 16 12 C -0.03 -0.79 10.85 -17.03 -0.18 -0.97 16 13 N -0.26 -7.57 10.40 30.80 0.32 -7.25 16 14 N -0.14 -3.86 3.74 -11.41 -0.04 -3.91 16 15 C -0.32 -8.52 10.25 -14.82 -0.15 -8.67 16 16 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 17 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 18 N -0.77 -21.42 11.81 55.49 0.66 -20.77 16 19 Si 0.94 18.85 29.55 -169.99 -5.02 13.83 16 20 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 21 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 C -0.08 -1.89 11.49 -16.39 -0.19 -2.08 16 24 C 0.02 0.20 11.94 30.04 0.36 0.55 16 25 O -0.19 -2.06 10.56 5.31 0.06 -2.00 16 26 C -0.13 -1.15 9.78 -39.04 -0.38 -1.53 16 27 C 0.11 0.86 11.17 -17.61 -0.20 0.66 16 28 N -0.48 -4.35 10.25 -9.56 -0.10 -4.45 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 31 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.14 0.90 7.98 -52.48 -0.42 0.48 16 33 H 0.41 6.57 8.54 -40.82 -0.35 6.22 16 34 H 0.18 4.53 5.91 -52.49 -0.31 4.22 16 35 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.15 2.92 8.06 -52.48 -0.42 2.50 16 37 H 0.24 1.99 8.06 -52.49 -0.42 1.57 16 38 H 0.15 1.23 7.91 -52.49 -0.42 0.81 16 39 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 355.68 15.07 5.36 5.36 Total: -1.00 -34.49 355.68 -5.81 -40.30 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -3.57 Total: 10.21 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -3.39 Total: -2.74 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.69 Total: -53.82 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.13 Total: -13.14 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.49 -5.81 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442399384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.914 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds