Wall clock time and date at job start Tue Mar 31 2020 22:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37997 * 119.55299 * 2 1 4 4 C 1.39912 * 118.99797 * 179.97438 * 3 2 1 5 5 C 1.47926 * 120.92373 * 179.97438 * 4 3 2 6 6 N 1.30854 * 125.50309 * 179.97438 * 5 4 3 7 7 C 1.35135 * 108.53386 * 179.97438 * 6 5 4 8 8 C 1.47471 * 126.32342 * 180.02562 * 7 6 5 9 9 O 1.21627 * 120.00255 * 179.97438 * 8 7 6 10 10 N 1.34783 * 119.99805 * 359.97271 * 8 7 6 11 11 C 1.40546 * 120.00038 * 180.02562 * 10 8 7 12 12 C 1.40660 * 126.08262 * 0.02562 * 11 10 8 13 13 N 1.30904 * 108.38924 * 180.02562 * 12 11 10 14 14 N 1.40068 * 108.40954 * 0.02562 * 13 12 11 15 15 C 1.37319 * 126.06993 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00011 * 179.97438 * 15 14 13 17 17 C 1.38988 * 119.99836 * 359.97211 * 15 14 13 18 18 N 1.31290 * 120.00029 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99913 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47069 * 59.99548 * 19 17 15 21 21 H 1.48501 * 109.47260 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46932 * 300.00062 * 19 17 15 23 23 C 1.35684 * 126.08609 * 179.71882 * 11 10 8 24 24 C 1.36316 * 107.35892 * 0.02562 * 7 6 5 25 25 O 1.34251 * 107.06745 * 359.77538 * 24 7 6 26 26 C 1.39951 * 118.15512 * 359.97438 * 4 3 2 27 27 C 1.37962 * 118.99540 * 0.02562 * 26 4 3 28 28 N 1.31904 * 119.55022 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47489 * 270.01667 * 1 2 3 30 30 H 1.09002 * 109.47455 * 30.02575 * 1 2 3 31 31 H 1.09010 * 109.46818 * 150.02081 * 1 2 3 32 32 H 1.08004 * 120.49566 * 359.95481 * 3 2 1 33 33 H 0.96996 * 120.00060 * 0.02562 * 10 8 7 34 34 H 1.08001 * 125.80599 * 359.96874 * 12 11 10 35 35 H 0.97004 * 120.00205 * 180.02562 * 18 17 15 36 36 H 1.08005 * 126.24700 * 359.97438 * 23 11 10 37 37 H 1.07999 * 126.46917 * 180.02562 * 24 7 6 38 38 H 1.07997 * 120.50459 * 180.02562 * 26 4 3 39 39 H 1.07999 * 119.54824 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1876 1.2004 0.0000 4 6 3.5867 1.1869 0.0005 5 6 4.3591 2.4484 0.0000 6 7 5.6644 2.5403 0.0009 7 6 6.0030 3.8485 -0.0006 8 6 7.3721 4.3965 -0.0008 9 8 7.5454 5.6004 -0.0026 10 7 8.4315 3.5632 0.0012 11 6 9.7363 4.0854 0.0016 12 6 10.0831 5.4486 0.0006 13 7 11.3888 5.5426 0.0008 14 7 11.9254 4.2488 0.0013 15 6 13.2604 3.9273 0.0022 16 1 13.5664 2.8915 0.0030 17 6 14.2179 4.9348 0.0020 18 7 13.8459 6.1939 0.0015 19 14 16.0339 4.4974 0.0025 20 1 16.3514 3.7004 -1.2097 21 1 16.8430 5.7426 0.0028 22 1 16.3510 3.7013 1.2153 23 6 10.8857 3.3644 0.0089 24 6 4.8453 4.5682 -0.0019 25 8 3.8331 3.6863 -0.0062 26 6 4.2351 -0.0534 0.0016 27 6 3.4755 -1.2051 0.0016 28 7 2.1575 -1.1475 0.0005 29 1 -0.3634 0.0003 1.0276 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5136 32 1 1.6484 2.1362 -0.0007 33 1 8.2934 2.6032 0.0024 34 1 9.3900 6.2769 -0.0011 35 1 14.5141 6.8971 0.0010 36 1 10.9638 2.2872 0.0158 37 1 4.7587 5.6447 -0.0036 38 1 5.3137 -0.1081 0.0025 39 1 3.9666 -2.1669 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442399384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:31 Heat of formation + Delta-G solvation = 87.908097 kcal Electronic energy + Delta-G solvation = -26680.514085 eV Core-core repulsion = 22591.184856 eV Total energy + Delta-G solvation = -4089.329228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.65961 -41.73511 -41.19212 -40.17323 -36.30254 -35.98127 -34.98675 -34.67608 -33.65884 -32.28104 -30.95413 -29.69876 -28.62395 -27.05867 -25.54541 -25.31811 -23.93172 -22.90090 -22.26667 -21.62717 -21.25813 -19.68622 -19.06870 -18.06704 -17.92764 -17.45995 -17.27200 -17.15895 -16.89077 -16.58535 -16.14078 -15.83661 -15.45770 -15.28194 -15.09550 -14.96740 -14.87331 -14.60223 -14.29624 -13.49263 -13.41913 -13.35110 -13.04788 -12.90931 -12.90073 -12.74259 -12.72441 -12.13543 -12.09640 -11.92492 -11.53141 -11.16188 -11.03562 -10.84595 -10.63510 -10.12857 -10.00399 -9.85872 -8.58525 -8.48096 -6.25763 -0.64192 0.06147 0.10171 1.06361 1.23567 1.31982 1.39952 1.56530 1.72458 1.91359 2.03150 2.17232 2.47724 2.56612 2.73102 2.88991 3.08031 3.34282 3.56047 3.58536 3.82587 3.86983 4.03714 4.14895 4.40741 4.45743 4.47419 4.52309 4.58101 4.70893 4.76172 4.83755 4.98155 5.01600 5.03320 5.07070 5.22992 5.25572 5.36165 5.61695 5.92793 6.14879 6.28293 6.62012 6.70446 6.91262 7.18045 7.42728 7.64145 8.51071 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.001942 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.591295 B =14415.739182 C =15496.182519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.123 3.877 3 C -0.142 4.142 4 C 0.018 3.982 5 C 0.228 3.772 6 N -0.451 5.451 7 C -0.081 4.081 8 C 0.585 3.415 9 O -0.561 6.561 10 N -0.598 5.598 11 C -0.051 4.051 12 C -0.053 4.053 13 N -0.308 5.308 14 N -0.165 5.165 15 C -0.354 4.354 16 H 0.141 0.859 17 C -0.006 4.006 18 N -0.823 5.823 19 Si 1.020 2.980 20 H -0.253 1.253 21 H -0.277 1.277 22 H -0.253 1.253 23 C -0.078 4.078 24 C 0.048 3.952 25 O -0.178 6.178 26 C -0.137 4.137 27 C 0.108 3.892 28 N -0.495 5.495 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.162 0.838 33 H 0.420 0.580 34 H 0.173 0.827 35 H 0.277 0.723 36 H 0.186 0.814 37 H 0.267 0.733 38 H 0.155 0.845 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.958 -13.440 0.029 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.014 4.014 3 C -0.163 4.163 4 C 0.009 3.991 5 C 0.022 3.978 6 N -0.181 5.181 7 C -0.203 4.203 8 C 0.371 3.629 9 O -0.441 6.441 10 N -0.241 5.241 11 C -0.157 4.157 12 C -0.228 4.228 13 N -0.140 5.140 14 N 0.067 4.933 15 C -0.485 4.485 16 H 0.159 0.841 17 C -0.218 4.218 18 N -0.450 5.450 19 Si 0.839 3.161 20 H -0.177 1.177 21 H -0.202 1.202 22 H -0.177 1.177 23 C -0.229 4.229 24 C -0.026 4.026 25 O -0.063 6.063 26 C -0.158 4.158 27 C -0.048 4.048 28 N -0.206 5.206 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.180 0.820 33 H 0.257 0.743 34 H 0.190 0.810 35 H 0.087 0.913 36 H 0.203 0.797 37 H 0.283 0.717 38 H 0.173 0.827 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -22.840 -12.864 0.020 26.213 hybrid contribution 0.349 0.721 0.011 0.802 sum -22.490 -12.143 0.031 25.559 Atomic orbital electron populations 1.20842 0.86165 1.04734 1.04339 1.21709 0.98743 0.87189 0.93760 1.22261 0.92189 1.01373 1.00523 1.17699 0.92575 0.86851 1.01984 1.23786 0.86932 0.84909 1.02190 1.70594 1.11959 1.18935 1.16616 1.21336 0.95138 0.89688 1.14124 1.16945 0.82736 0.85451 0.77720 1.90708 1.85386 1.15345 1.52637 1.42199 1.02111 1.10212 1.69552 1.17321 0.84015 0.92191 1.22161 1.24203 0.93379 0.96365 1.08888 1.78154 1.07766 1.00563 1.27488 1.44848 1.05466 1.02934 1.40070 1.20610 0.77437 0.96424 1.54065 0.84143 1.26894 1.06674 0.94164 0.94059 1.70383 1.36991 1.00686 1.36960 0.84642 0.72933 0.78295 0.80270 1.17736 1.20192 1.17743 1.21953 0.86108 0.96871 1.17927 1.26026 0.82693 0.97413 0.96489 1.84471 1.36946 1.16059 1.68790 1.22358 1.03073 0.91052 0.99354 1.23167 0.88666 0.99231 0.93730 1.67565 1.10953 1.30089 1.12010 0.89060 0.88596 0.90176 0.82029 0.74322 0.81018 0.91279 0.79653 0.71719 0.82738 0.79157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.16 71.24 0.72 -0.05 16 2 C 0.12 1.69 6.78 42.49 0.29 1.98 16 3 C -0.14 -1.98 9.44 22.62 0.21 -1.77 16 4 C 0.02 0.32 5.91 -19.89 -0.12 0.20 16 5 C 0.23 4.92 7.91 87.41 0.69 5.61 16 6 N -0.45 -11.68 10.70 -294.59 -3.15 -14.83 16 7 C -0.08 -2.30 6.97 40.62 0.28 -2.01 16 8 C 0.58 21.53 7.79 86.68 0.67 22.21 16 9 O -0.56 -24.01 14.03 -4.12 -0.06 -24.07 16 10 N -0.60 -22.68 5.46 -306.81 -1.68 -24.36 16 11 C -0.05 -2.41 6.90 37.74 0.26 -2.15 16 12 C -0.05 -2.91 10.85 85.42 0.93 -1.99 16 13 N -0.31 -18.65 10.40 -56.46 -0.59 -19.24 16 14 N -0.16 -9.24 3.74 -190.00 -0.71 -9.95 16 15 C -0.35 -18.85 10.25 84.01 0.86 -17.99 16 16 H 0.14 6.46 7.83 -2.91 -0.02 6.44 16 17 C -0.01 -0.31 5.50 84.95 0.47 0.16 16 18 N -0.82 -47.46 11.81 21.66 0.26 -47.20 16 19 Si 1.02 38.53 29.55 68.60 2.03 40.55 16 20 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 21 H -0.28 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 23 C -0.08 -3.70 11.49 83.37 0.96 -2.75 16 24 C 0.05 1.01 11.94 67.37 0.80 1.82 16 25 O -0.18 -3.46 10.56 -3.93 -0.04 -3.50 16 26 C -0.14 -2.19 9.78 22.62 0.22 -1.97 16 27 C 0.11 1.52 11.17 84.61 0.95 2.46 16 28 N -0.50 -8.14 10.25 -184.17 -1.89 -10.02 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.35 8.08 -2.39 -0.02 0.33 16 31 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.16 1.55 7.98 -2.91 -0.02 1.53 16 33 H 0.42 13.28 8.54 -92.71 -0.79 12.49 16 34 H 0.17 9.33 5.91 -2.91 -0.02 9.31 16 35 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.19 7.04 8.06 -2.91 -0.02 7.02 16 37 H 0.27 3.75 8.06 -2.91 -0.02 3.72 16 38 H 0.15 2.32 7.91 -2.91 -0.02 2.30 16 39 H 0.19 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -78.01 355.68 2.72 -75.29 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.34 Total: 33.55 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 8.20 Total: 3.78 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -7.76 Total: -125.61 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.10 Total: -27.57 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.55 kcal Total: -78.01 2.72 -75.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442399384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.203 kcal (2) G-P(sol) polarization free energy of solvation -78.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds