Wall clock time and date at job start Tue Mar 31 2020 22:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99903 * 2 1 4 4 H 1.48499 * 109.47622 * 269.99849 * 3 2 1 5 5 H 1.48497 * 109.47431 * 30.00360 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00009 * 3 2 1 7 7 C 1.38697 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99893 * 359.97438 * 7 2 1 9 9 O 1.34812 * 119.99775 * 180.02562 * 7 2 1 10 10 C 1.35524 * 116.99885 * 185.05293 * 9 7 2 11 11 C 1.38833 * 120.15862 * 354.39086 * 10 9 7 12 12 C 1.38025 * 120.06963 * 180.02562 * 11 10 9 13 13 C 1.38577 * 120.40269 * 359.97438 * 12 11 10 14 14 C 1.37819 * 120.32137 * 0.02562 * 13 12 11 15 15 C 1.39669 * 119.92181 * 359.97438 * 14 13 12 16 16 C 1.47531 * 120.19568 * 180.02562 * 15 14 13 17 17 O 1.21598 * 119.99888 * 179.97438 * 16 15 14 18 18 N 1.34778 * 120.00458 * 359.97256 * 16 15 14 19 19 C 1.46504 * 120.00291 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47186 * 180.02562 * 19 18 16 21 21 N 1.32614 * 125.18383 * 90.02658 * 20 19 18 22 22 C 1.32827 * 109.75462 * 179.97438 * 21 20 19 23 23 N 1.33823 * 132.49888 * 180.02562 * 22 21 20 24 24 C 1.31345 * 120.86319 * 179.97438 * 23 22 21 25 25 C 1.40042 * 120.31023 * 0.02562 * 24 23 22 26 26 C 1.35778 * 119.24338 * 359.97438 * 25 24 23 27 27 N 1.35975 * 119.02101 * 0.02562 * 26 25 24 28 28 N 1.31177 * 125.18761 * 269.72686 * 20 19 18 29 29 H 0.97005 * 119.99689 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.96772 * 0.02562 * 11 10 9 31 31 H 1.08002 * 119.79695 * 180.02562 * 12 11 10 32 32 H 1.08000 * 119.83376 * 179.72202 * 13 12 11 33 33 H 1.07999 * 120.04002 * 179.97438 * 14 13 12 34 34 H 0.97005 * 119.99597 * 0.02562 * 18 16 15 35 35 H 1.08997 * 109.47126 * 300.00448 * 19 18 16 36 36 H 1.09002 * 109.46647 * 60.00832 * 19 18 16 37 37 H 1.08002 * 119.84395 * 179.97438 * 24 23 22 38 38 H 1.08011 * 120.38020 * 180.02562 * 25 24 23 39 39 H 1.08006 * 120.49151 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0087 -1.2012 -0.0005 8 1 1.4686 -2.1365 -0.0005 9 8 3.3568 -1.2011 0.0000 10 6 3.9721 -2.4039 -0.1069 11 6 3.2243 -3.5736 -0.0936 12 6 3.8529 -4.7975 -0.2021 13 6 5.2313 -4.8696 -0.3254 14 6 5.9896 -3.7188 -0.3404 15 6 5.3675 -2.4731 -0.2316 16 6 6.1732 -1.2373 -0.2476 17 8 5.6279 -0.1547 -0.1530 18 7 7.5138 -1.3084 -0.3669 19 6 8.3139 -0.0812 -0.3834 20 6 9.7721 -0.4341 -0.5258 21 7 10.4176 -0.5657 -1.6767 22 6 11.6872 -0.8804 -1.4460 23 7 12.7231 -1.1143 -2.2603 24 6 13.9068 -1.4133 -1.7760 25 6 14.1046 -1.4931 -0.3919 26 6 13.0594 -1.2575 0.4422 27 7 11.8466 -0.9503 -0.0905 28 7 10.5977 -0.6525 0.4699 29 1 -0.4850 0.8401 -0.0004 30 1 2.1496 -3.5257 0.0017 31 1 3.2668 -5.7047 -0.1917 32 1 5.7140 -5.8324 -0.4051 33 1 7.0635 -3.7802 -0.4363 34 1 7.9489 -2.1721 -0.4427 35 1 8.0073 0.5412 -1.2240 36 1 8.1611 0.4645 0.5477 37 1 14.7313 -1.5994 -2.4484 38 1 15.0776 -1.7386 0.0076 39 1 13.1894 -1.3132 1.5129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460970036.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:40 Heat of formation + Delta-G solvation = 94.257775 kcal Electronic energy + Delta-G solvation = -27428.198655 eV Core-core repulsion = 23339.144769 eV Total energy + Delta-G solvation = -4089.053886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.10134 -41.46416 -40.22762 -39.71214 -38.18773 -36.17086 -35.50220 -34.51344 -32.93897 -31.96593 -31.87808 -30.82589 -28.85769 -27.24108 -25.68692 -24.98823 -24.48214 -23.04389 -22.28242 -21.74864 -19.82975 -19.71643 -19.51741 -19.10687 -18.12753 -17.90273 -17.24674 -16.97821 -16.45723 -16.40044 -16.02594 -15.71356 -15.59055 -15.48143 -15.39698 -14.64895 -14.45843 -14.35564 -14.20234 -14.04289 -13.87981 -13.83323 -13.76065 -13.18754 -13.12898 -12.86532 -12.59640 -12.41509 -12.01607 -11.56143 -11.47060 -11.04069 -10.99986 -10.96307 -10.70115 -10.34645 -9.98827 -9.89323 -9.17493 -8.57347 -6.26157 -0.54971 -0.42649 0.00748 0.62265 0.76375 1.09677 1.26084 1.32028 1.59728 1.94549 2.00828 2.25526 2.30921 2.40940 2.68719 2.75390 2.99060 3.14408 3.29089 3.50210 3.80072 3.91403 3.97523 4.11905 4.21877 4.31749 4.38624 4.45089 4.51087 4.56206 4.72147 4.77823 4.91274 5.00713 5.02081 5.18775 5.26545 5.33262 5.45092 5.59211 5.67537 5.82580 6.12854 6.32813 6.41509 6.70620 6.79314 7.22490 7.57951 8.52831 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.002641 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.681418 B =10600.815043 C =11907.318155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.027 3.973 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.403 4.403 8 H 0.094 0.906 9 O -0.207 6.207 10 C 0.165 3.835 11 C -0.248 4.248 12 C -0.039 4.039 13 C -0.189 4.189 14 C -0.032 4.032 15 C -0.232 4.232 16 C 0.564 3.436 17 O -0.563 6.563 18 N -0.712 5.712 19 C 0.221 3.779 20 C 0.260 3.740 21 N -0.554 5.554 22 C 0.422 3.578 23 N -0.494 5.494 24 C 0.216 3.784 25 C -0.182 4.182 26 C 0.145 3.855 27 N -0.329 5.329 28 N -0.332 5.332 29 H 0.286 0.714 30 H 0.119 0.881 31 H 0.154 0.846 32 H 0.165 0.835 33 H 0.154 0.846 34 H 0.409 0.591 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.240 0.760 38 H 0.234 0.766 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.684 -9.606 0.785 36.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.174 4.174 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.479 4.479 8 H 0.111 0.889 9 O -0.111 6.111 10 C 0.112 3.888 11 C -0.267 4.267 12 C -0.057 4.057 13 C -0.207 4.207 14 C -0.050 4.050 15 C -0.236 4.236 16 C 0.354 3.646 17 O -0.442 6.442 18 N -0.368 5.368 19 C 0.095 3.905 20 C -0.022 4.022 21 N -0.288 5.288 22 C 0.062 3.938 23 N -0.211 5.211 24 C 0.033 3.967 25 C -0.206 4.206 26 C 0.010 3.990 27 N -0.109 5.109 28 N -0.165 5.165 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.172 0.828 32 H 0.183 0.817 33 H 0.171 0.829 34 H 0.246 0.754 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.256 0.744 38 H 0.250 0.750 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 34.337 -8.210 0.419 35.307 hybrid contribution -0.217 0.520 0.643 0.855 sum 34.120 -7.690 1.061 34.992 Atomic orbital electron populations 1.69683 1.06404 1.29568 1.49309 1.25038 0.95643 1.01426 0.95286 0.85439 0.79217 0.78522 0.79076 1.20238 1.19019 1.18788 1.20903 0.78272 0.96355 1.52339 0.88887 1.83767 1.20919 1.26839 1.79591 1.19697 0.91786 0.85849 0.91472 1.21346 1.00715 0.92761 1.11852 1.21454 0.95642 0.96377 0.92199 1.21201 0.93211 0.99116 1.07198 1.21251 1.00285 0.89777 0.93720 1.19121 0.90100 0.94427 1.19979 1.18305 0.81614 0.89054 0.75596 1.90857 1.71935 1.30935 1.50457 1.45469 1.05432 1.09370 1.76512 1.19316 0.78974 0.87730 1.04496 1.24033 0.97272 0.95490 0.85432 1.70645 1.02109 1.28638 1.27433 1.22910 0.93598 0.97086 0.80177 1.68156 0.99315 1.18493 1.35136 1.24688 0.92424 0.83331 0.96221 1.22725 1.01619 1.03212 0.93053 1.23196 0.79231 0.92202 1.04407 1.48916 1.09534 1.43450 1.08982 1.78471 0.88497 1.30269 1.19289 0.90442 0.86313 0.82828 0.81708 0.82882 0.75364 0.88999 0.88528 0.74412 0.74957 0.76808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.25 13.96 21.62 0.30 -55.94 16 2 C 0.03 1.63 5.49 84.85 0.47 2.10 16 3 Si 0.95 51.58 28.62 68.60 1.96 53.54 16 4 H -0.28 -14.84 7.11 99.48 0.71 -14.13 16 5 H -0.27 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.26 -15.24 7.11 99.48 0.71 -14.53 16 7 C -0.40 -24.87 9.95 67.93 0.68 -24.20 16 8 H 0.09 5.78 5.44 -2.91 -0.02 5.77 16 9 O -0.21 -12.26 6.67 0.82 0.01 -12.25 16 10 C 0.17 8.20 6.66 22.90 0.15 8.35 16 11 C -0.25 -10.70 9.16 22.36 0.20 -10.50 16 12 C -0.04 -1.21 10.03 22.30 0.22 -0.99 16 13 C -0.19 -5.00 10.02 22.25 0.22 -4.78 16 14 C -0.03 -0.95 9.53 22.52 0.21 -0.73 16 15 C -0.23 -9.58 5.89 -19.99 -0.12 -9.70 16 16 C 0.56 24.01 7.76 86.69 0.67 24.69 16 17 O -0.56 -29.71 15.17 16.87 0.26 -29.45 16 18 N -0.71 -23.10 5.50 -469.99 -2.58 -25.68 16 19 C 0.22 6.89 6.30 85.63 0.54 7.43 16 20 C 0.26 7.56 7.46 138.69 1.03 8.59 16 21 N -0.55 -17.12 11.25 -191.25 -2.15 -19.27 16 22 C 0.42 10.35 8.99 261.60 2.35 12.70 16 23 N -0.49 -8.85 10.48 -197.64 -2.07 -10.92 16 24 C 0.22 0.78 11.27 85.20 0.96 1.74 16 25 C -0.18 0.26 10.06 22.14 0.22 0.48 16 26 C 0.14 0.93 11.32 83.48 0.94 1.88 16 27 N -0.33 -6.47 3.91 -197.70 -0.77 -7.25 16 28 N -0.33 -8.65 12.78 -51.45 -0.66 -9.31 16 29 H 0.29 16.29 8.31 -92.70 -0.77 15.51 16 30 H 0.12 5.56 5.64 -2.91 -0.02 5.54 16 31 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 33 H 0.15 3.29 6.40 -2.91 -0.02 3.27 16 34 H 0.41 10.90 6.49 -92.70 -0.60 10.30 16 35 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.24 -1.64 8.06 -2.91 -0.02 -1.66 16 38 H 0.23 -2.97 8.06 -2.90 -0.02 -2.99 16 39 H 0.22 -0.13 8.06 -2.91 -0.02 -0.16 16 Total: -1.00 -96.15 348.40 3.60 -92.55 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.54 Total: 6.93 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 8.77 Total: 17.05 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -7.93 Total: -128.37 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: 0.26 Total: -41.71 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 1.96 Total: 53.54 kcal Total: -96.15 3.60 -92.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460970036.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.809 kcal (2) G-P(sol) polarization free energy of solvation -96.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds