Wall clock time and date at job start Tue Mar 31 2020 22:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86805 * 120.00012 * 2 1 4 4 H 1.48497 * 109.47214 * 270.00010 * 3 2 1 5 5 H 1.48506 * 109.46942 * 29.99863 * 3 2 1 6 6 H 1.48495 * 109.47276 * 149.99783 * 3 2 1 7 7 C 1.38650 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99805 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.35744 * 117.00162 * 185.05534 * 9 7 2 11 11 C 1.38878 * 120.06999 * 354.46537 * 10 9 7 12 12 C 1.38102 * 119.92973 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06883 * 0.02598 * 12 11 10 14 14 C 1.50704 * 119.93140 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47113 * 89.99678 * 14 13 12 16 16 O 1.21274 * 120.00064 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99582 * 179.97438 * 15 14 13 18 18 C 1.39641 * 119.99598 * 179.97438 * 17 15 14 19 19 N 1.32872 * 125.26328 * 359.97438 * 18 17 15 20 20 C 1.32648 * 109.69084 * 179.97438 * 19 18 17 21 21 C 1.40671 * 133.68043 * 179.97438 * 20 19 18 22 22 N 1.31277 * 119.64925 * 179.97438 * 21 20 19 23 23 C 1.33293 * 121.27909 * 0.03615 * 22 21 20 24 24 C 1.35324 * 121.13095 * 359.97438 * 23 22 21 25 25 N 1.35974 * 119.73087 * 359.97438 * 24 23 22 26 26 N 1.31959 * 125.25972 * 180.02562 * 18 17 15 27 27 C 1.38299 * 120.13966 * 0.24776 * 13 12 11 28 28 C 1.38101 * 120.06763 * 359.45441 * 27 13 12 29 29 H 0.97004 * 120.00296 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.03632 * 359.97438 * 11 10 9 31 31 H 1.07994 * 119.96608 * 179.97438 * 12 11 10 32 32 H 1.08999 * 109.46832 * 329.99966 * 14 13 12 33 33 H 1.09000 * 109.47218 * 209.99606 * 14 13 12 34 34 H 0.96999 * 120.00301 * 0.02562 * 17 15 14 35 35 H 1.07995 * 120.17402 * 0.02754 * 21 20 19 36 36 H 1.07997 * 119.43732 * 180.25630 * 23 22 21 37 37 H 1.08007 * 120.13565 * 180.02562 * 24 23 22 38 38 H 1.08005 * 119.96698 * 179.71073 * 27 13 12 39 39 H 1.08001 * 120.03486 * 180.27483 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0700 -3.5045 0.1077 11 6 3.4572 -3.4393 0.0952 12 6 4.2024 -4.5970 0.2038 13 6 3.5686 -5.8203 0.3244 14 6 4.3848 -7.0817 0.4421 15 6 4.6633 -7.3660 1.8957 16 8 4.2402 -6.6183 2.7517 17 7 5.3816 -8.4517 2.2443 18 6 5.6400 -8.7149 3.5911 19 7 5.2307 -7.9680 4.6110 20 6 5.6477 -8.5017 5.7515 21 6 5.5061 -8.1385 7.1032 22 7 6.0459 -8.8871 8.0367 23 6 6.7296 -9.9896 7.7305 24 6 6.8917 -10.3777 6.4443 25 7 6.3499 -9.6350 5.4425 26 7 6.3294 -9.7433 4.0478 27 6 2.1873 -5.8890 0.3314 28 6 1.4366 -4.7344 0.2293 29 1 -0.4851 0.8401 0.0004 30 1 3.9527 -2.4845 -0.0002 31 1 5.2811 -4.5470 0.1938 32 1 5.3275 -6.9555 -0.0904 33 1 3.8312 -7.9145 0.0086 34 1 5.7197 -9.0500 1.5597 35 1 4.9556 -7.2490 7.3714 36 1 7.1577 -10.5858 8.5227 37 1 7.4484 -11.2742 6.2145 38 1 1.6953 -6.8463 0.4210 39 1 0.3579 -4.7883 0.2393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462198746.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:17 Heat of formation + Delta-G solvation = 122.305305 kcal Electronic energy + Delta-G solvation = -26857.014422 eV Core-core repulsion = 22769.176769 eV Total energy + Delta-G solvation = -4087.837653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.33186 -40.27964 -39.21206 -38.67485 -36.54813 -35.17811 -34.27659 -32.48288 -31.73160 -31.16751 -30.54979 -30.13452 -26.97281 -25.43355 -25.06142 -24.29950 -22.85950 -21.96035 -21.01960 -20.31404 -18.81513 -18.79257 -17.96286 -17.11606 -17.01881 -16.96430 -16.76695 -15.93112 -15.48092 -15.45325 -14.66809 -14.51417 -14.33654 -13.95076 -13.94623 -13.71561 -13.53490 -13.35739 -12.70565 -12.61907 -12.43139 -12.25434 -11.87175 -11.53783 -11.25590 -11.11981 -10.86117 -10.79303 -10.62786 -10.60003 -10.56589 -10.40728 -9.80949 -9.42557 -9.30310 -8.80402 -8.80179 -8.13338 -7.16227 -6.42238 -4.00700 -0.04032 0.35436 1.24839 2.02563 2.17652 2.27527 2.56353 2.79138 3.07514 3.14861 3.16591 3.21353 3.37775 3.64754 3.67528 3.99511 4.29738 4.50590 4.67939 4.76970 4.82892 5.05281 5.12245 5.19222 5.27239 5.32924 5.52521 5.59176 5.62116 5.73135 5.85373 5.91573 6.22002 6.23889 6.43283 6.68122 6.76872 6.93602 7.04264 7.07958 7.25365 7.37473 7.47096 7.62767 7.85186 8.02946 8.05023 9.03411 9.73455 10.75736 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017234 B = 0.002096 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.323350 B =13356.488259 C =14316.109283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.159 3.841 11 C -0.233 4.233 12 C -0.053 4.053 13 C -0.178 4.178 14 C -0.069 4.069 15 C 0.503 3.497 16 O -0.447 6.447 17 N -0.634 5.634 18 C 0.490 3.510 19 N -0.493 5.493 20 C 0.237 3.763 21 C 0.171 3.829 22 N -0.428 5.428 23 C 0.022 3.978 24 C 0.077 3.923 25 N -0.265 5.265 26 N -0.353 5.353 27 C -0.056 4.056 28 C -0.191 4.191 29 H 0.270 0.730 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.424 0.576 35 H 0.198 0.802 36 H 0.190 0.810 37 H 0.181 0.819 38 H 0.109 0.891 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.107 -22.292 9.222 28.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.105 3.895 11 C -0.252 4.252 12 C -0.071 4.071 13 C -0.179 4.179 14 C -0.109 4.109 15 C 0.288 3.712 16 O -0.311 6.311 17 N -0.289 5.289 18 C 0.123 3.877 19 N -0.227 5.227 20 C -0.021 4.021 21 C -0.011 4.011 22 N -0.141 5.141 23 C -0.122 4.122 24 C -0.055 4.055 25 N -0.044 5.044 26 N -0.196 5.196 27 C -0.075 4.075 28 C -0.211 4.211 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.262 0.738 35 H 0.215 0.785 36 H 0.207 0.793 37 H 0.198 0.802 38 H 0.127 0.873 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.368 -21.520 9.986 27.736 hybrid contribution 0.951 0.062 -0.990 1.374 sum 15.319 -21.458 8.996 27.858 Atomic orbital electron populations 1.70040 1.05951 1.27652 1.46067 1.25294 0.95852 0.98843 0.96566 0.85711 0.78973 0.80090 0.78657 1.19904 1.20247 1.19175 1.21336 0.91818 0.80811 1.52729 0.89037 1.83975 1.34410 1.11489 1.78107 1.19394 0.90300 0.88034 0.91785 1.21101 0.93798 0.98778 1.11516 1.20511 0.98079 0.91726 0.96832 1.18553 0.93179 0.92483 1.13723 1.20381 1.01814 0.98685 0.90021 1.21661 0.77231 0.79126 0.93157 1.90888 1.45006 1.44000 1.51226 1.43228 1.55346 1.29104 1.01266 1.20628 0.90898 0.88201 0.87955 1.70962 1.28215 1.29088 0.94467 1.23136 0.94578 0.86823 0.97551 1.22958 0.96393 0.99592 0.82159 1.68199 1.06247 1.04255 1.35357 1.22430 1.00394 0.95736 0.93625 1.22636 0.98751 0.98349 0.85812 1.47670 1.32935 1.17989 1.05790 1.78748 1.32981 1.24129 0.83710 1.20404 0.92675 0.96793 0.97615 1.20155 0.99539 0.90248 1.11122 0.92031 0.85529 0.87738 0.88289 0.88243 0.73813 0.78538 0.79312 0.80174 0.87290 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.61 13.67 55.48 0.76 -24.85 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 7 C -0.39 -11.11 9.49 30.88 0.29 -10.82 16 8 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 9 O -0.18 -5.14 9.76 0.07 0.00 -5.14 16 10 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 11 C -0.23 -5.19 9.17 -39.39 -0.36 -5.55 16 12 C -0.05 -0.99 9.69 -39.61 -0.38 -1.38 16 13 C -0.18 -3.01 4.38 -104.57 -0.46 -3.47 16 14 C -0.07 -0.80 5.83 -29.03 -0.17 -0.97 16 15 C 0.50 7.02 7.79 -10.98 -0.09 6.94 16 16 O -0.45 -8.59 14.68 5.56 0.08 -8.51 16 17 N -0.63 -7.15 5.43 -12.88 -0.07 -7.22 16 18 C 0.49 6.73 8.78 -321.18 -2.82 3.91 16 19 N -0.49 -7.64 9.38 -13.08 -0.12 -7.76 16 20 C 0.24 2.89 7.91 -156.28 -1.24 1.65 16 21 C 0.17 1.58 11.33 -16.87 -0.19 1.39 16 22 N -0.43 -3.43 10.43 -13.14 -0.14 -3.57 16 23 C 0.02 0.12 11.08 -17.96 -0.20 -0.08 16 24 C 0.08 0.47 11.25 -16.75 -0.19 0.28 16 25 N -0.26 -2.83 3.95 -12.28 -0.05 -2.88 16 26 N -0.35 -4.33 12.82 29.99 0.38 -3.94 16 27 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 28 C -0.19 -4.16 9.99 -39.39 -0.39 -4.55 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 31 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.42 2.97 8.82 -40.82 -0.36 2.61 16 35 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.19 0.26 8.06 -52.49 -0.42 -0.17 16 37 H 0.18 0.47 8.06 -52.48 -0.42 0.04 16 38 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 39 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -38.75 352.00 -9.24 -48.00 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -3.44 Total: 4.12 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -6.93 Total: -9.38 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.76 Total: -50.23 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.08 Total: -13.65 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -38.75 -9.24 -48.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462198746.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.304 kcal (2) G-P(sol) polarization free energy of solvation -38.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds