Wall clock time and date at job start Tue Mar 31 2020 22:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86805 * 120.00012 * 2 1 4 4 H 1.48497 * 109.47214 * 270.00010 * 3 2 1 5 5 H 1.48506 * 109.46942 * 29.99863 * 3 2 1 6 6 H 1.48495 * 109.47276 * 149.99783 * 3 2 1 7 7 C 1.38650 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99805 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.35744 * 117.00162 * 185.05534 * 9 7 2 11 11 C 1.38878 * 120.06999 * 354.46537 * 10 9 7 12 12 C 1.38102 * 119.92973 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06883 * 0.02598 * 12 11 10 14 14 C 1.50704 * 119.93140 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47113 * 89.99678 * 14 13 12 16 16 O 1.21274 * 120.00064 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99582 * 179.97438 * 15 14 13 18 18 C 1.39641 * 119.99598 * 179.97438 * 17 15 14 19 19 N 1.32872 * 125.26328 * 359.97438 * 18 17 15 20 20 C 1.32648 * 109.69084 * 179.97438 * 19 18 17 21 21 C 1.40671 * 133.68043 * 179.97438 * 20 19 18 22 22 N 1.31277 * 119.64925 * 179.97438 * 21 20 19 23 23 C 1.33293 * 121.27909 * 0.03615 * 22 21 20 24 24 C 1.35324 * 121.13095 * 359.97438 * 23 22 21 25 25 N 1.35974 * 119.73087 * 359.97438 * 24 23 22 26 26 N 1.31959 * 125.25972 * 180.02562 * 18 17 15 27 27 C 1.38299 * 120.13966 * 0.24776 * 13 12 11 28 28 C 1.38101 * 120.06763 * 359.45441 * 27 13 12 29 29 H 0.97004 * 120.00296 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.03632 * 359.97438 * 11 10 9 31 31 H 1.07994 * 119.96608 * 179.97438 * 12 11 10 32 32 H 1.08999 * 109.46832 * 329.99966 * 14 13 12 33 33 H 1.09000 * 109.47218 * 209.99606 * 14 13 12 34 34 H 0.96999 * 120.00301 * 0.02562 * 17 15 14 35 35 H 1.07995 * 120.17402 * 0.02754 * 21 20 19 36 36 H 1.07997 * 119.43732 * 180.25630 * 23 22 21 37 37 H 1.08007 * 120.13565 * 180.02562 * 24 23 22 38 38 H 1.08005 * 119.96698 * 179.71073 * 27 13 12 39 39 H 1.08001 * 120.03486 * 180.27483 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0700 -3.5045 0.1077 11 6 3.4572 -3.4393 0.0952 12 6 4.2024 -4.5970 0.2038 13 6 3.5686 -5.8203 0.3244 14 6 4.3848 -7.0817 0.4421 15 6 4.6633 -7.3660 1.8957 16 8 4.2402 -6.6183 2.7517 17 7 5.3816 -8.4517 2.2443 18 6 5.6400 -8.7149 3.5911 19 7 5.2307 -7.9680 4.6110 20 6 5.6477 -8.5017 5.7515 21 6 5.5061 -8.1385 7.1032 22 7 6.0459 -8.8871 8.0367 23 6 6.7296 -9.9896 7.7305 24 6 6.8917 -10.3777 6.4443 25 7 6.3499 -9.6350 5.4425 26 7 6.3294 -9.7433 4.0478 27 6 2.1873 -5.8890 0.3314 28 6 1.4366 -4.7344 0.2293 29 1 -0.4851 0.8401 0.0004 30 1 3.9527 -2.4845 -0.0002 31 1 5.2811 -4.5470 0.1938 32 1 5.3275 -6.9555 -0.0904 33 1 3.8312 -7.9145 0.0086 34 1 5.7197 -9.0500 1.5597 35 1 4.9556 -7.2490 7.3714 36 1 7.1577 -10.5858 8.5227 37 1 7.4484 -11.2742 6.2145 38 1 1.6953 -6.8463 0.4210 39 1 0.3579 -4.7883 0.2393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462198746.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:17 Heat of formation + Delta-G solvation = 95.852588 kcal Electronic energy + Delta-G solvation = -26858.161498 eV Core-core repulsion = 22769.176769 eV Total energy + Delta-G solvation = -4088.984729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.11515 -41.34409 -40.61432 -39.77591 -38.22359 -36.13773 -35.08228 -34.39555 -32.99983 -32.16881 -31.76736 -31.28139 -28.43224 -27.15168 -25.99000 -25.05751 -23.86034 -23.63130 -22.28860 -21.51661 -19.85942 -19.60563 -19.54203 -18.81400 -17.98903 -17.83573 -17.67350 -16.68618 -16.64728 -16.38865 -16.07856 -16.00026 -15.89413 -15.51644 -15.18400 -14.88971 -14.51055 -14.48670 -14.37605 -14.10023 -13.60627 -13.22731 -13.13105 -12.97058 -12.77748 -12.48488 -12.32112 -12.25371 -12.12748 -12.00008 -11.58586 -11.21218 -11.17097 -10.92535 -10.76318 -10.29999 -9.75099 -9.51505 -8.91385 -8.47091 -6.15186 -0.66571 -0.40657 0.46329 0.63073 0.72673 1.10846 1.33949 1.43274 1.51981 1.64787 1.91652 2.17797 2.34138 2.60009 2.81785 2.94876 3.16299 3.18434 3.52577 3.68863 3.85132 4.03379 4.06218 4.13038 4.20248 4.27173 4.44840 4.48166 4.60556 4.69560 4.81274 4.83700 4.98171 5.09155 5.15054 5.26173 5.31134 5.31799 5.56913 5.72635 5.76916 5.95536 6.03386 6.24920 6.43405 6.75736 6.97449 7.11389 7.78771 8.76299 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017234 B = 0.002096 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.323350 B =13356.488259 C =14316.109283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.413 4.413 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.114 3.886 11 C -0.245 4.245 12 C -0.056 4.056 13 C -0.151 4.151 14 C -0.064 4.064 15 C 0.510 3.490 16 O -0.510 6.510 17 N -0.616 5.616 18 C 0.471 3.529 19 N -0.549 5.549 20 C 0.218 3.782 21 C 0.155 3.845 22 N -0.430 5.430 23 C 0.037 3.963 24 C 0.076 3.924 25 N -0.265 5.265 26 N -0.359 5.359 27 C -0.054 4.054 28 C -0.208 4.208 29 H 0.273 0.727 30 H 0.117 0.883 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.444 0.556 35 H 0.204 0.796 36 H 0.238 0.762 37 H 0.222 0.778 38 H 0.149 0.851 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.764 -25.987 9.989 33.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.064 3.936 11 C -0.265 4.265 12 C -0.074 4.074 13 C -0.152 4.152 14 C -0.103 4.103 15 C 0.297 3.703 16 O -0.379 6.379 17 N -0.273 5.273 18 C 0.105 3.895 19 N -0.284 5.284 20 C -0.037 4.037 21 C -0.025 4.025 22 N -0.143 5.143 23 C -0.107 4.107 24 C -0.056 4.056 25 N -0.044 5.044 26 N -0.202 5.202 27 C -0.072 4.072 28 C -0.227 4.227 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.286 0.714 35 H 0.221 0.779 36 H 0.254 0.746 37 H 0.239 0.761 38 H 0.166 0.834 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 18.077 -25.305 10.744 32.902 hybrid contribution 0.051 0.664 -1.005 1.206 sum 18.128 -24.641 9.739 32.103 Atomic orbital electron populations 1.70189 1.08000 1.28773 1.48958 1.26617 0.96910 1.02779 0.95909 0.84579 0.77692 0.74500 0.79364 1.18456 1.19535 1.17930 1.21817 0.92477 0.81501 1.53157 0.88250 1.83935 1.35997 1.12614 1.81443 1.19962 0.91688 0.87977 0.94004 1.21227 0.93110 1.00063 1.12071 1.20954 0.99784 0.91089 0.95617 1.19178 0.93281 0.94332 1.08388 1.20531 1.03593 0.97067 0.89099 1.21910 0.76303 0.78761 0.93343 1.90895 1.47782 1.46280 1.52960 1.42928 1.54483 1.28701 1.01163 1.20875 0.91573 0.88618 0.88469 1.70857 1.30505 1.31173 0.95909 1.23336 0.95166 0.87499 0.97733 1.23101 0.97509 1.00523 0.81396 1.68265 1.06028 1.04963 1.35012 1.23311 0.98279 0.94559 0.94564 1.23540 0.98014 0.98965 0.85061 1.47907 1.32537 1.17990 1.05936 1.78635 1.33142 1.23796 0.84623 1.20900 0.93499 0.96992 0.95781 1.20446 0.99922 0.90713 1.11608 0.91840 0.86542 0.84218 0.84007 0.83757 0.71397 0.77937 0.74640 0.76117 0.83362 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.24 13.67 21.61 0.30 -57.95 16 2 C -0.02 -1.47 5.49 84.83 0.47 -1.00 16 3 Si 1.02 44.44 29.55 68.60 2.03 46.46 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.41 -25.08 9.49 67.92 0.64 -24.44 16 8 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 9 O -0.23 -14.67 9.76 -22.68 -0.22 -14.90 16 10 C 0.11 5.99 6.65 22.58 0.15 6.14 16 11 C -0.25 -11.28 9.17 22.39 0.21 -11.08 16 12 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 13 C -0.15 -4.65 4.38 -19.83 -0.09 -4.74 16 14 C -0.06 -1.15 5.83 29.10 0.17 -0.98 16 15 C 0.51 12.82 7.79 87.66 0.68 13.51 16 16 O -0.51 -19.26 14.68 -3.01 -0.04 -19.30 16 17 N -0.62 -12.28 5.43 -313.05 -1.70 -13.98 16 18 C 0.47 12.43 8.78 260.92 2.29 14.72 16 19 N -0.55 -17.11 9.38 -195.29 -1.83 -18.94 16 20 C 0.22 5.24 7.91 134.09 1.06 6.30 16 21 C 0.15 2.79 11.33 85.37 0.97 3.76 16 22 N -0.43 -5.94 10.43 -195.47 -2.04 -7.98 16 23 C 0.04 0.25 11.08 83.80 0.93 1.18 16 24 C 0.08 0.66 11.25 83.38 0.94 1.59 16 25 N -0.27 -5.16 3.95 -192.77 -0.76 -5.92 16 26 N -0.36 -8.15 12.82 -59.04 -0.76 -8.91 16 27 C -0.05 -1.86 9.69 22.25 0.22 -1.65 16 28 C -0.21 -9.34 9.99 22.39 0.22 -9.12 16 29 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 30 H 0.12 5.45 5.64 -2.91 -0.02 5.44 16 31 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 32 H 0.14 1.53 8.08 -2.39 -0.02 1.51 16 33 H 0.14 1.49 8.08 -2.39 -0.02 1.48 16 34 H 0.44 4.57 8.82 -92.71 -0.82 3.75 16 35 H 0.20 3.10 8.06 -2.91 -0.02 3.07 16 36 H 0.24 -0.74 8.06 -2.91 -0.02 -0.77 16 37 H 0.22 -0.01 8.06 -2.91 -0.02 -0.04 16 38 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 39 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -95.87 352.00 4.36 -91.51 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.32 Total: 17.51 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 9.07 Total: -7.61 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -6.79 Total: -113.67 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.27 Total: -34.20 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -95.87 4.36 -91.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462198746.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.359 kcal (2) G-P(sol) polarization free energy of solvation -95.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds