Wall clock time and date at job start Tue Mar 31 2020 22:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48503 * 109.47067 * 269.99953 * 3 2 1 5 5 H 1.48497 * 109.47349 * 29.99574 * 3 2 1 6 6 H 1.48496 * 109.47479 * 150.00056 * 3 2 1 7 7 C 1.38646 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99993 * 0.02562 * 7 2 1 9 9 O 1.34831 * 120.00233 * 180.02562 * 7 2 1 10 10 C 1.35759 * 116.99776 * 185.05660 * 9 7 2 11 11 C 1.38875 * 120.07190 * 354.46623 * 10 9 7 12 12 C 1.38091 * 119.93091 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06848 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.92968 * 179.97438 * 13 12 11 15 15 N 1.46494 * 109.47343 * 90.00081 * 14 13 12 16 16 C 1.34778 * 120.00281 * 180.02562 * 15 14 13 17 17 O 1.21560 * 119.99873 * 359.97438 * 16 15 14 18 18 C 1.47824 * 120.00028 * 180.02562 * 16 15 14 19 19 C 1.41576 * 120.37536 * 359.71817 * 18 16 15 20 20 C 1.34816 * 120.11334 * 180.27544 * 19 18 16 21 21 N 1.36055 * 120.83139 * 359.97438 * 20 19 18 22 22 N 1.40248 * 133.73150 * 179.97438 * 21 20 19 23 23 N 1.28974 * 107.01849 * 180.02562 * 22 21 20 24 24 N 1.28541 * 110.84463 * 0.02562 * 23 22 21 25 25 C 1.32623 * 110.18535 * 359.97438 * 24 23 22 26 26 C 1.38458 * 120.37304 * 179.97438 * 18 16 15 27 27 C 1.38295 * 120.13848 * 0.25308 * 13 12 11 28 28 C 1.38104 * 120.06858 * 359.45447 * 27 13 12 29 29 H 0.97003 * 119.99951 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03483 * 359.97438 * 11 10 9 31 31 H 1.07999 * 119.96702 * 179.97438 * 12 11 10 32 32 H 1.09007 * 109.46824 * 329.99874 * 14 13 12 33 33 H 1.08998 * 109.46906 * 210.00172 * 14 13 12 34 34 H 0.97000 * 119.99854 * 359.97438 * 15 14 13 35 35 H 1.08003 * 119.94077 * 0.28057 * 19 18 16 36 36 H 1.08003 * 119.58515 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.51715 * 359.70436 * 26 18 16 38 38 H 1.08005 * 119.96350 * 179.70233 * 27 13 12 39 39 H 1.08001 * 120.03258 * 180.27186 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 1.4690 -2.1360 0.0005 9 8 3.3572 -1.2006 0.0011 10 6 3.9736 -2.4056 -0.1051 11 6 3.2236 -3.5744 -0.0922 12 6 3.8536 -4.7985 -0.1997 13 6 5.2300 -4.8613 -0.3197 14 6 5.9144 -6.1989 -0.4364 15 7 6.0191 -6.5724 -1.8490 16 6 6.5994 -7.7380 -2.1967 17 8 7.0365 -8.4793 -1.3381 18 6 6.7056 -8.1146 -3.6222 19 6 6.1949 -7.2596 -4.6285 20 6 6.2895 -7.6108 -5.9266 21 7 6.8737 -8.7844 -6.2907 22 7 7.1127 -9.4067 -7.5246 23 7 7.7082 -10.5232 -7.2753 24 7 7.8746 -10.6803 -6.0104 25 6 7.3807 -9.6409 -5.3513 26 6 7.3008 -9.3100 -3.9881 27 6 5.9801 -3.6994 -0.3271 28 6 5.3555 -2.4719 -0.2259 29 1 -0.4850 0.8401 -0.0004 30 1 2.1489 -3.5260 0.0028 31 1 3.2710 -5.7078 -0.1894 32 1 5.3336 -6.9518 0.0965 33 1 6.9122 -6.1355 -0.0024 34 1 5.6700 -5.9811 -2.5341 35 1 5.7288 -6.3243 -4.3556 36 1 5.8967 -6.9523 -6.6872 37 1 7.6978 -9.9773 -3.2375 38 1 7.0552 -3.7520 -0.4161 39 1 5.9415 -1.5647 -0.2362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464759947.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:30 Heat of formation + Delta-G solvation = 119.460834 kcal Electronic energy + Delta-G solvation = -26603.842727 eV Core-core repulsion = 22515.881729 eV Total energy + Delta-G solvation = -4087.960999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.87327 -40.56843 -39.44743 -38.64943 -37.20517 -34.92541 -34.50092 -32.80110 -32.53828 -31.04890 -30.55362 -30.29187 -26.88413 -25.57877 -25.28026 -24.32266 -23.34719 -22.32907 -21.46903 -20.82172 -19.23655 -18.63835 -18.10586 -17.71499 -17.36660 -17.34640 -16.19081 -15.70792 -15.66522 -15.34614 -14.98274 -14.65822 -14.26978 -14.14225 -14.00085 -13.91368 -13.59575 -13.55178 -13.07837 -12.96314 -12.86761 -12.52617 -12.38658 -12.24073 -11.98918 -11.63865 -11.54686 -11.14378 -10.96488 -10.89816 -10.72990 -10.53327 -10.32226 -9.60889 -9.40543 -9.18321 -9.05856 -8.52638 -7.62870 -6.60164 -4.27533 -0.49093 -0.14954 1.15827 1.56889 1.74608 1.88769 2.02695 2.64072 2.86979 3.09250 3.13310 3.22006 3.26826 3.52258 3.74558 3.98914 4.07447 4.25676 4.29546 4.37516 4.62037 4.72516 4.87556 4.91371 4.93775 5.06203 5.14386 5.16292 5.34103 5.40387 5.55870 5.64045 5.72743 5.89763 6.05699 6.10114 6.31588 6.53502 6.74594 6.97145 7.04168 7.11798 7.36635 7.58960 7.71492 7.83003 7.84896 8.73897 9.33309 10.46605 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019171 B = 0.001964 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.217504 B =14256.000546 C =15083.846741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.393 4.393 8 H 0.108 0.892 9 O -0.210 6.210 10 C 0.168 3.832 11 C -0.225 4.225 12 C -0.051 4.051 13 C -0.213 4.213 14 C 0.177 3.823 15 N -0.708 5.708 16 C 0.556 3.444 17 O -0.524 6.524 18 C -0.067 4.067 19 C -0.115 4.115 20 C 0.110 3.890 21 N -0.295 5.295 22 N -0.107 5.107 23 N -0.008 5.008 24 N -0.313 5.313 25 C 0.237 3.763 26 C -0.025 4.025 27 C -0.055 4.055 28 C -0.196 4.196 29 H 0.282 0.718 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.403 0.597 35 H 0.174 0.826 36 H 0.190 0.810 37 H 0.182 0.818 38 H 0.115 0.885 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.595 -11.644 -7.704 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.468 4.468 8 H 0.126 0.874 9 O -0.114 6.114 10 C 0.114 3.886 11 C -0.244 4.244 12 C -0.069 4.069 13 C -0.215 4.215 14 C 0.056 3.944 15 N -0.359 5.359 16 C 0.340 3.660 17 O -0.401 6.401 18 C -0.079 4.079 19 C -0.138 4.138 20 C -0.017 4.017 21 N -0.076 5.076 22 N -0.090 5.090 23 N -0.001 5.001 24 N -0.173 5.173 25 C -0.017 4.017 26 C -0.048 4.048 27 C -0.073 4.073 28 C -0.215 4.215 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.239 0.761 35 H 0.192 0.808 36 H 0.207 0.793 37 H 0.199 0.801 38 H 0.133 0.867 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.132 -12.678 -8.387 19.449 hybrid contribution -0.505 1.737 0.225 1.823 sum 11.627 -10.941 -8.162 17.930 Atomic orbital electron populations 1.69639 1.05624 1.28820 1.46786 1.24503 0.95061 0.99004 0.95367 0.86171 0.80352 0.81274 0.79074 1.19761 1.20614 1.18298 1.20785 0.76676 0.96755 1.52600 0.87429 1.83580 1.22846 1.25868 1.79100 1.19205 0.91760 0.85521 0.92096 1.21285 1.01324 0.91744 1.10035 1.20706 0.93276 0.96896 0.96054 1.19211 0.93794 0.93271 1.15199 1.20117 1.00543 0.93844 0.79930 1.46274 1.59106 1.20198 1.10334 1.17790 0.79189 0.82189 0.86802 1.90848 1.47615 1.51131 1.50502 1.20418 0.98062 0.94386 0.95019 1.21273 1.00861 1.01635 0.90049 1.21623 0.96367 0.85602 0.98104 1.49065 1.35431 1.15525 1.07536 1.82845 1.22964 1.05075 0.98092 1.77909 1.05972 1.08072 1.08098 1.75271 1.24176 1.20158 0.97727 1.22777 0.96786 0.88819 0.93344 1.20795 0.96846 0.96635 0.90567 1.20540 0.98430 0.91180 0.97190 1.20225 0.91944 0.97961 1.11360 0.90789 0.84741 0.87015 0.90798 0.90807 0.76102 0.80836 0.79310 0.80115 0.86689 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.60 13.96 55.48 0.77 -22.82 16 2 C 0.07 1.70 5.49 -17.52 -0.10 1.61 16 3 Si 0.91 20.11 28.62 -169.99 -4.86 15.24 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -10.15 9.95 30.88 0.31 -9.84 16 8 H 0.11 2.83 5.44 -52.49 -0.29 2.54 16 9 O -0.21 -5.00 8.59 0.02 0.00 -5.00 16 10 C 0.17 3.35 6.65 -39.11 -0.26 3.09 16 11 C -0.22 -4.10 9.17 -39.40 -0.36 -4.46 16 12 C -0.05 -0.72 9.69 -39.61 -0.38 -1.11 16 13 C -0.21 -2.65 5.25 -104.57 -0.55 -3.20 16 14 C 0.18 1.79 5.80 -5.19 -0.03 1.76 16 15 N -0.71 -5.73 5.50 -62.44 -0.34 -6.07 16 16 C 0.56 4.98 7.78 -12.34 -0.10 4.88 16 17 O -0.52 -6.54 16.37 5.31 0.09 -6.45 16 18 C -0.07 -0.45 5.90 -104.62 -0.62 -1.07 16 19 C -0.11 -0.48 9.48 -39.52 -0.37 -0.85 16 20 C 0.11 0.54 11.18 -16.89 -0.19 0.35 16 21 N -0.30 -2.63 3.94 -12.43 -0.05 -2.68 16 22 N -0.11 -1.21 13.98 60.35 0.84 -0.37 16 23 N -0.01 -0.10 13.35 60.35 0.81 0.71 16 24 N -0.31 -3.81 12.27 31.03 0.38 -3.43 16 25 C 0.24 2.32 8.02 -156.36 -1.25 1.07 16 26 C -0.02 -0.19 9.70 -38.65 -0.37 -0.57 16 27 C -0.05 -0.72 9.69 -39.61 -0.38 -1.10 16 28 C -0.20 -3.23 9.99 -39.39 -0.39 -3.62 16 29 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 31 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.07 0.78 8.08 -51.92 -0.42 0.36 16 33 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.40 2.43 6.53 -40.82 -0.27 2.16 16 35 H 0.17 0.23 6.46 -52.48 -0.34 -0.11 16 36 H 0.19 0.31 8.06 -52.48 -0.42 -0.11 16 37 H 0.18 1.31 7.67 -52.49 -0.40 0.91 16 38 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 39 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -31.49 350.10 -5.40 -36.89 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -3.26 Total: 1.77 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -5.06 Total: -13.07 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 2.41 Total: -34.66 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.86 Total: 15.24 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.49 -5.40 -36.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464759947.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.354 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds