Wall clock time and date at job start Tue Mar 31 2020 22:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48503 * 109.47067 * 269.99953 * 3 2 1 5 5 H 1.48497 * 109.47349 * 29.99574 * 3 2 1 6 6 H 1.48496 * 109.47479 * 150.00056 * 3 2 1 7 7 C 1.38646 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99993 * 0.02562 * 7 2 1 9 9 O 1.34831 * 120.00233 * 180.02562 * 7 2 1 10 10 C 1.35759 * 116.99776 * 185.05660 * 9 7 2 11 11 C 1.38875 * 120.07190 * 354.46623 * 10 9 7 12 12 C 1.38091 * 119.93091 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06848 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.92968 * 179.97438 * 13 12 11 15 15 N 1.46494 * 109.47343 * 90.00081 * 14 13 12 16 16 C 1.34778 * 120.00281 * 180.02562 * 15 14 13 17 17 O 1.21560 * 119.99873 * 359.97438 * 16 15 14 18 18 C 1.47824 * 120.00028 * 180.02562 * 16 15 14 19 19 C 1.41576 * 120.37536 * 359.71817 * 18 16 15 20 20 C 1.34816 * 120.11334 * 180.27544 * 19 18 16 21 21 N 1.36055 * 120.83139 * 359.97438 * 20 19 18 22 22 N 1.40248 * 133.73150 * 179.97438 * 21 20 19 23 23 N 1.28974 * 107.01849 * 180.02562 * 22 21 20 24 24 N 1.28541 * 110.84463 * 0.02562 * 23 22 21 25 25 C 1.32623 * 110.18535 * 359.97438 * 24 23 22 26 26 C 1.38458 * 120.37304 * 179.97438 * 18 16 15 27 27 C 1.38295 * 120.13848 * 0.25308 * 13 12 11 28 28 C 1.38104 * 120.06858 * 359.45447 * 27 13 12 29 29 H 0.97003 * 119.99951 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03483 * 359.97438 * 11 10 9 31 31 H 1.07999 * 119.96702 * 179.97438 * 12 11 10 32 32 H 1.09007 * 109.46824 * 329.99874 * 14 13 12 33 33 H 1.08998 * 109.46906 * 210.00172 * 14 13 12 34 34 H 0.97000 * 119.99854 * 359.97438 * 15 14 13 35 35 H 1.08003 * 119.94077 * 0.28057 * 19 18 16 36 36 H 1.08003 * 119.58515 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.51715 * 359.70436 * 26 18 16 38 38 H 1.08005 * 119.96350 * 179.70233 * 27 13 12 39 39 H 1.08001 * 120.03258 * 180.27186 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 1.4690 -2.1360 0.0005 9 8 3.3572 -1.2006 0.0011 10 6 3.9736 -2.4056 -0.1051 11 6 3.2236 -3.5744 -0.0922 12 6 3.8536 -4.7985 -0.1997 13 6 5.2300 -4.8613 -0.3197 14 6 5.9144 -6.1989 -0.4364 15 7 6.0191 -6.5724 -1.8490 16 6 6.5994 -7.7380 -2.1967 17 8 7.0365 -8.4793 -1.3381 18 6 6.7056 -8.1146 -3.6222 19 6 6.1949 -7.2596 -4.6285 20 6 6.2895 -7.6108 -5.9266 21 7 6.8737 -8.7844 -6.2907 22 7 7.1127 -9.4067 -7.5246 23 7 7.7082 -10.5232 -7.2753 24 7 7.8746 -10.6803 -6.0104 25 6 7.3807 -9.6409 -5.3513 26 6 7.3008 -9.3100 -3.9881 27 6 5.9801 -3.6994 -0.3271 28 6 5.3555 -2.4719 -0.2259 29 1 -0.4850 0.8401 -0.0004 30 1 2.1489 -3.5260 0.0028 31 1 3.2710 -5.7078 -0.1894 32 1 5.3336 -6.9518 0.0965 33 1 6.9122 -6.1355 -0.0024 34 1 5.6700 -5.9811 -2.5341 35 1 5.7288 -6.3243 -4.3556 36 1 5.8967 -6.9523 -6.6872 37 1 7.6978 -9.9773 -3.2375 38 1 7.0552 -3.7520 -0.4161 39 1 5.9415 -1.5647 -0.2362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464759947.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:29 Heat of formation + Delta-G solvation = 97.911200 kcal Electronic energy + Delta-G solvation = -26604.777190 eV Core-core repulsion = 22515.881729 eV Total energy + Delta-G solvation = -4088.895461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.58384 -41.35478 -40.81301 -39.38596 -38.54616 -35.86161 -35.18341 -34.43580 -33.44691 -31.83384 -31.67622 -31.45417 -28.05237 -26.92871 -25.93322 -25.36499 -24.00128 -23.67176 -22.27519 -22.02776 -20.00808 -19.78119 -19.28346 -19.06155 -18.19141 -18.08647 -16.91022 -16.76826 -16.50687 -16.26954 -16.04382 -15.80655 -15.63183 -15.54692 -15.13480 -14.72468 -14.48680 -14.44958 -14.26395 -14.16915 -14.03475 -13.71097 -13.39100 -13.10052 -13.08171 -12.73672 -12.57198 -12.44230 -12.32081 -12.27918 -11.92124 -11.38083 -11.34860 -11.26512 -10.88929 -10.17553 -9.80986 -9.78221 -9.06596 -8.48914 -6.21563 -1.09683 -0.75053 0.51242 0.57160 0.59932 0.88042 1.34086 1.34737 1.36909 1.53613 1.86001 2.23488 2.28729 2.55567 2.78666 2.89870 3.08779 3.16255 3.28462 3.45516 3.71495 3.82024 3.96736 4.05416 4.06798 4.19319 4.32626 4.49182 4.51772 4.59373 4.65589 4.78905 4.82873 4.87420 5.01262 5.20334 5.27426 5.29168 5.37760 5.58149 5.74976 5.82941 5.92069 6.23266 6.41625 6.85764 7.02689 7.08041 7.59691 8.62090 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019171 B = 0.001964 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.217504 B =14256.000546 C =15083.846741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.396 4.396 8 H 0.085 0.915 9 O -0.244 6.244 10 C 0.128 3.872 11 C -0.240 4.240 12 C -0.047 4.047 13 C -0.174 4.174 14 C 0.181 3.819 15 N -0.697 5.697 16 C 0.563 3.437 17 O -0.558 6.558 18 C -0.055 4.055 19 C -0.094 4.094 20 C 0.110 3.890 21 N -0.293 5.293 22 N -0.124 5.124 23 N -0.032 5.032 24 N -0.343 5.343 25 C 0.226 3.774 26 C -0.032 4.032 27 C -0.042 4.042 28 C -0.194 4.194 29 H 0.284 0.716 30 H 0.107 0.893 31 H 0.137 0.863 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.417 0.583 35 H 0.213 0.787 36 H 0.227 0.773 37 H 0.181 0.819 38 H 0.157 0.843 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.821 -11.604 -8.016 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.472 4.472 8 H 0.102 0.898 9 O -0.151 6.151 10 C 0.079 3.921 11 C -0.259 4.259 12 C -0.066 4.066 13 C -0.175 4.175 14 C 0.058 3.942 15 N -0.349 5.349 16 C 0.349 3.651 17 O -0.437 6.437 18 C -0.067 4.067 19 C -0.117 4.117 20 C -0.016 4.016 21 N -0.074 5.074 22 N -0.108 5.108 23 N -0.025 5.025 24 N -0.205 5.205 25 C -0.026 4.026 26 C -0.056 4.056 27 C -0.060 4.060 28 C -0.213 4.213 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.155 0.845 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.255 0.745 35 H 0.230 0.770 36 H 0.243 0.757 37 H 0.198 0.802 38 H 0.175 0.825 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.388 -12.665 -8.723 21.060 hybrid contribution -0.989 1.430 0.382 1.780 sum 13.399 -11.236 -8.341 19.374 Atomic orbital electron populations 1.69728 1.06930 1.29571 1.50005 1.25271 0.95838 1.02174 0.95632 0.85237 0.78812 0.77535 0.79289 1.18954 1.19774 1.18591 1.20689 0.78053 0.96077 1.52423 0.89803 1.83529 1.21246 1.27781 1.82547 1.19800 0.93360 0.85022 0.93947 1.21272 1.00270 0.93177 1.11191 1.20947 0.94470 0.96118 0.95019 1.19494 0.92830 0.94549 1.10629 1.20040 1.00911 0.92035 0.81165 1.45992 1.58807 1.20207 1.09868 1.17871 0.78391 0.81720 0.87121 1.90855 1.49055 1.52176 1.51645 1.20293 0.97644 0.94233 0.94487 1.21675 0.99165 1.02019 0.88826 1.22447 0.95169 0.84499 0.99483 1.49202 1.35221 1.16314 1.06618 1.82719 1.23642 1.05146 0.99247 1.77860 1.07005 1.08977 1.08615 1.75142 1.25616 1.21850 0.97880 1.22842 0.97151 0.88734 0.93902 1.20795 0.97671 0.97428 0.89695 1.20981 1.00463 0.89695 0.94851 1.20534 0.90367 0.99989 1.10385 0.90640 0.87528 0.84543 0.90497 0.89596 0.74489 0.77030 0.75653 0.80177 0.82530 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.28 13.96 21.61 0.30 -51.98 16 2 C 0.01 0.52 5.49 84.83 0.47 0.98 16 3 Si 0.97 42.48 28.62 68.60 1.96 44.44 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.40 -21.51 9.95 67.92 0.68 -20.84 16 8 H 0.08 4.76 5.44 -2.91 -0.02 4.74 16 9 O -0.24 -11.94 8.59 -22.85 -0.20 -12.14 16 10 C 0.13 5.10 6.65 22.58 0.15 5.25 16 11 C -0.24 -8.73 9.17 22.39 0.21 -8.52 16 12 C -0.05 -1.20 9.69 22.25 0.22 -0.98 16 13 C -0.17 -3.45 5.25 -19.83 -0.10 -3.55 16 14 C 0.18 2.64 5.80 85.64 0.50 3.14 16 15 N -0.70 -7.35 5.50 -469.72 -2.59 -9.94 16 16 C 0.56 7.64 7.78 86.78 0.68 8.31 16 17 O -0.56 -12.07 16.37 -3.90 -0.06 -12.14 16 18 C -0.05 -0.53 5.90 -19.87 -0.12 -0.65 16 19 C -0.09 -0.30 9.48 22.31 0.21 -0.09 16 20 C 0.11 0.62 11.18 83.25 0.93 1.56 16 21 N -0.29 -4.64 3.94 -193.24 -0.76 -5.40 16 22 N -0.12 -2.74 13.98 37.02 0.52 -2.22 16 23 N -0.03 -0.82 13.35 37.02 0.49 -0.33 16 24 N -0.34 -8.46 12.27 -55.73 -0.68 -9.14 16 25 C 0.23 4.19 8.02 134.05 1.07 5.27 16 26 C -0.03 -0.44 9.70 22.87 0.22 -0.22 16 27 C -0.04 -0.88 9.69 22.25 0.22 -0.66 16 28 C -0.19 -5.84 9.99 22.39 0.22 -5.62 16 29 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.11 4.47 5.64 -2.91 -0.02 4.45 16 31 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 32 H 0.08 1.21 8.08 -2.38 -0.02 1.19 16 33 H 0.09 1.20 8.08 -2.39 -0.02 1.18 16 34 H 0.42 2.30 6.53 -92.71 -0.61 1.69 16 35 H 0.21 -0.94 6.46 -2.91 -0.02 -0.96 16 36 H 0.23 -0.43 8.06 -2.91 -0.02 -0.46 16 37 H 0.18 2.45 7.67 -2.91 -0.02 2.42 16 38 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -75.40 350.10 5.07 -70.33 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 0.54 Total: 5.14 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 5.54 Total: -16.62 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -2.72 Total: -79.02 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.26 Total: -24.28 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.96 Total: 44.44 kcal Total: -75.40 5.07 -70.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464759947.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.241 kcal (2) G-P(sol) polarization free energy of solvation -75.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds