Wall clock time and date at job start Tue Mar 31 2020 22:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86800 * 120.00108 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99847 * 3 2 1 5 5 H 1.48507 * 109.47211 * 29.99834 * 3 2 1 6 6 H 1.48505 * 109.46969 * 149.99507 * 3 2 1 7 7 C 1.38650 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99876 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00455 * 180.02562 * 7 2 1 10 10 C 1.35753 * 116.99980 * 185.06005 * 9 7 2 11 11 C 1.38877 * 120.07198 * 354.46248 * 10 9 7 12 12 C 1.38096 * 119.93329 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.92625 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.47121 * 90.00684 * 14 13 12 16 16 C 1.34771 * 119.99776 * 180.27695 * 15 14 13 17 17 O 1.21522 * 120.00288 * 359.71662 * 16 15 14 18 18 C 1.48136 * 119.99744 * 179.72518 * 16 15 14 19 19 N 1.33471 * 125.32392 * 0.02562 * 18 16 15 20 20 C 1.32499 * 109.75486 * 180.02562 * 19 18 16 21 21 N 1.33985 * 132.34307 * 180.02562 * 20 19 18 22 22 C 1.31258 * 120.87984 * 179.97438 * 21 20 19 23 23 C 1.40172 * 120.35410 * 0.03201 * 22 21 20 24 24 C 1.35675 * 119.27683 * 359.97031 * 23 22 21 25 25 N 1.36175 * 119.02707 * 0.02562 * 24 23 22 26 26 N 1.31982 * 125.32326 * 179.71612 * 18 16 15 27 27 C 1.38298 * 120.14326 * 0.25695 * 13 12 11 28 28 C 1.38111 * 120.06447 * 359.44743 * 27 13 12 29 29 H 0.97000 * 119.99823 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.03543 * 0.02562 * 11 10 9 31 31 H 1.08004 * 119.96668 * 180.02562 * 12 11 10 32 32 H 1.09000 * 109.47468 * 330.00338 * 14 13 12 33 33 H 1.09001 * 109.47115 * 210.00399 * 14 13 12 34 34 H 0.96998 * 119.99687 * 359.97438 * 15 14 13 35 35 H 1.08000 * 119.81961 * 179.97438 * 22 21 20 36 36 H 1.08006 * 120.36065 * 179.97438 * 23 22 21 37 37 H 1.08003 * 120.48838 * 180.02562 * 24 23 22 38 38 H 1.07994 * 119.96878 * 179.70329 * 27 13 12 39 39 H 1.07993 * 120.03462 * 180.27464 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4401 0.7002 7 6 2.0088 -1.2007 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0011 10 6 3.9734 -2.4057 -0.1051 11 6 3.2234 -3.5745 -0.0922 12 6 3.8534 -4.7986 -0.1999 13 6 5.2298 -4.8615 -0.3199 14 6 5.9140 -6.1991 -0.4366 15 7 6.0187 -6.5725 -1.8494 16 6 6.5944 -7.7404 -2.1968 17 8 7.0314 -8.4815 -1.3386 18 6 6.6948 -8.1208 -3.6250 19 7 6.2530 -7.3904 -4.6510 20 6 6.5003 -8.0215 -5.7895 21 7 6.2545 -7.7060 -7.0682 22 6 6.6042 -8.5149 -8.0409 23 6 7.2437 -9.7295 -7.7568 24 6 7.4977 -10.0594 -6.4655 25 7 7.1231 -9.1998 -5.4780 26 7 7.2403 -9.2322 -4.0822 27 6 5.9800 -3.6997 -0.3272 28 6 5.3554 -2.4721 -0.2261 29 1 -0.4850 0.8401 -0.0004 30 1 2.1486 -3.5261 0.0019 31 1 3.2706 -5.7079 -0.1903 32 1 5.3332 -6.9521 0.0961 33 1 6.9119 -6.1358 -0.0027 34 1 5.6697 -5.9811 -2.5345 35 1 6.3973 -8.2436 -9.0656 36 1 7.5312 -10.3954 -8.5571 37 1 7.9897 -10.9901 -6.2243 38 1 7.0550 -3.7522 -0.4163 39 1 5.9413 -1.5650 -0.2363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464760994.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:49 Heat of formation + Delta-G solvation = 114.008052 kcal Electronic energy + Delta-G solvation = -26588.767422 eV Core-core repulsion = 22500.569972 eV Total energy + Delta-G solvation = -4088.197449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.40375 -40.07562 -39.30460 -38.78333 -37.02642 -35.14947 -34.60163 -32.47092 -32.01577 -31.21973 -30.39326 -30.15626 -26.88089 -25.69917 -24.98781 -24.21449 -23.32619 -22.16325 -20.69291 -20.61763 -19.06055 -18.71919 -17.98941 -17.79380 -17.28252 -17.18730 -16.51134 -15.95134 -15.44584 -15.09734 -14.83888 -14.69784 -14.13138 -13.97609 -13.87901 -13.84077 -13.39136 -13.34804 -13.24194 -12.89558 -12.71542 -12.53608 -12.25675 -12.01030 -11.48685 -11.00401 -10.85085 -10.79844 -10.75232 -10.60349 -10.46327 -10.29475 -10.20214 -9.46269 -9.40620 -9.15388 -8.93124 -8.34886 -7.46802 -6.47566 -4.14313 -0.21278 0.06621 1.20043 1.40726 1.93672 2.06238 2.57088 2.69276 2.94574 3.11429 3.19317 3.23231 3.37158 3.62629 3.68345 4.07860 4.19126 4.25933 4.44185 4.56395 4.68660 4.76915 5.04645 5.10484 5.14707 5.32677 5.42681 5.48821 5.57330 5.60112 5.72605 5.79254 6.05908 6.25490 6.26756 6.47989 6.70303 6.81564 6.91194 7.13889 7.14591 7.21231 7.46659 7.52317 7.73401 7.92987 7.96657 8.87001 9.47615 10.59552 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016066 B = 0.002071 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.435422 B =13519.449456 C =14627.167358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.391 4.391 8 H 0.108 0.892 9 O -0.212 6.212 10 C 0.168 3.832 11 C -0.224 4.224 12 C -0.049 4.049 13 C -0.209 4.209 14 C 0.178 3.822 15 N -0.691 5.691 16 C 0.606 3.394 17 O -0.513 6.513 18 C 0.244 3.756 19 N -0.495 5.495 20 C 0.442 3.558 21 N -0.447 5.447 22 C 0.209 3.791 23 C -0.218 4.218 24 C 0.172 3.828 25 N -0.329 5.329 26 N -0.269 5.269 27 C -0.053 4.053 28 C -0.195 4.195 29 H 0.281 0.719 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.416 0.584 35 H 0.194 0.806 36 H 0.178 0.822 37 H 0.186 0.814 38 H 0.115 0.885 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.144 -19.639 -16.460 29.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.125 0.875 9 O -0.116 6.116 10 C 0.115 3.885 11 C -0.243 4.243 12 C -0.068 4.068 13 C -0.211 4.211 14 C 0.056 3.944 15 N -0.344 5.344 16 C 0.385 3.615 17 O -0.386 6.386 18 C -0.040 4.040 19 N -0.229 5.229 20 C 0.082 3.918 21 N -0.161 5.161 22 C 0.022 3.978 23 C -0.243 4.243 24 C 0.035 3.965 25 N -0.110 5.110 26 N -0.103 5.103 27 C -0.072 4.072 28 C -0.214 4.214 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.130 0.870 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.253 0.747 35 H 0.211 0.789 36 H 0.195 0.805 37 H 0.203 0.797 38 H 0.133 0.867 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.008 -19.065 -15.017 28.535 hybrid contribution 0.281 0.087 -0.652 0.715 sum 15.288 -18.978 -15.670 28.973 Atomic orbital electron populations 1.69642 1.05603 1.28654 1.47319 1.24491 0.95053 0.98938 0.95492 0.86173 0.80333 0.81315 0.79050 1.19781 1.20710 1.18311 1.20794 0.76758 0.96741 1.52335 0.87460 1.83574 1.22776 1.25851 1.79421 1.19192 0.91752 0.85499 0.92045 1.21274 1.01269 0.91728 1.10035 1.20707 0.93250 0.96952 0.95893 1.19200 0.93853 0.93238 1.14780 1.20171 1.00605 0.93960 0.79622 1.46153 1.58154 1.19457 1.10589 1.16360 0.79721 0.82579 0.82821 1.90851 1.47702 1.51492 1.48514 1.24328 0.94529 0.89087 0.96043 1.70884 1.27895 1.29533 0.94568 1.22712 0.93108 0.82684 0.93315 1.68126 1.20832 1.32083 0.95018 1.23710 0.87071 0.87930 0.99071 1.22048 1.05541 1.00981 0.95775 1.22255 0.93841 0.94970 0.85417 1.49067 1.38106 1.16793 1.07044 1.78944 1.27022 1.21284 0.83058 1.20541 0.98486 0.91180 0.96986 1.20209 0.91934 0.97899 1.11371 0.90919 0.84734 0.86981 0.90676 0.90680 0.74733 0.78904 0.80469 0.79680 0.86653 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.92 13.96 55.48 0.77 -24.15 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.35 28.62 -169.99 -4.86 16.48 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.39 -10.80 9.95 30.88 0.31 -10.49 16 8 H 0.11 3.02 5.44 -52.48 -0.29 2.74 16 9 O -0.21 -5.46 8.59 0.04 0.00 -5.46 16 10 C 0.17 3.75 6.65 -39.11 -0.26 3.49 16 11 C -0.22 -4.64 9.17 -39.40 -0.36 -5.00 16 12 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 13 C -0.21 -3.27 5.25 -104.58 -0.55 -3.82 16 14 C 0.18 2.42 5.80 -5.19 -0.03 2.39 16 15 N -0.69 -9.53 5.55 -62.33 -0.35 -9.87 16 16 C 0.61 9.16 7.84 -12.20 -0.10 9.06 16 17 O -0.51 -8.89 17.07 5.35 0.09 -8.80 16 18 C 0.24 3.59 7.92 -156.79 -1.24 2.35 16 19 N -0.49 -7.24 10.89 -12.23 -0.13 -7.37 16 20 C 0.44 5.47 8.99 -323.05 -2.90 2.57 16 21 N -0.45 -4.34 10.48 -13.79 -0.14 -4.49 16 22 C 0.21 0.81 11.27 -17.07 -0.19 0.61 16 23 C -0.22 -0.39 10.06 -39.77 -0.40 -0.79 16 24 C 0.17 0.82 11.32 -16.54 -0.19 0.63 16 25 N -0.33 -3.47 3.91 -13.80 -0.05 -3.52 16 26 N -0.27 -3.72 12.78 32.02 0.41 -3.32 16 27 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 28 C -0.19 -3.69 9.99 -39.39 -0.39 -4.09 16 29 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.14 2.95 5.64 -52.48 -0.30 2.65 16 31 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.42 5.67 8.13 -40.82 -0.33 5.34 16 35 H 0.19 -0.10 8.06 -52.49 -0.42 -0.53 16 36 H 0.18 -0.48 8.06 -52.48 -0.42 -0.90 16 37 H 0.19 0.25 8.06 -52.48 -0.42 -0.17 16 38 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -35.76 354.27 -9.52 -45.28 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -3.42 Total: 3.75 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -7.17 Total: -3.87 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.51 Total: -52.71 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.09 Total: -14.26 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.86 Total: 16.48 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.76 -9.52 -45.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464760994.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.288 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds