Wall clock time and date at job start Tue Mar 31 2020 22:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86800 * 120.00108 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99847 * 3 2 1 5 5 H 1.48507 * 109.47211 * 29.99834 * 3 2 1 6 6 H 1.48505 * 109.46969 * 149.99507 * 3 2 1 7 7 C 1.38650 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99876 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00455 * 180.02562 * 7 2 1 10 10 C 1.35753 * 116.99980 * 185.06005 * 9 7 2 11 11 C 1.38877 * 120.07198 * 354.46248 * 10 9 7 12 12 C 1.38096 * 119.93329 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.92625 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.47121 * 90.00684 * 14 13 12 16 16 C 1.34771 * 119.99776 * 180.27695 * 15 14 13 17 17 O 1.21522 * 120.00288 * 359.71662 * 16 15 14 18 18 C 1.48136 * 119.99744 * 179.72518 * 16 15 14 19 19 N 1.33471 * 125.32392 * 0.02562 * 18 16 15 20 20 C 1.32499 * 109.75486 * 180.02562 * 19 18 16 21 21 N 1.33985 * 132.34307 * 180.02562 * 20 19 18 22 22 C 1.31258 * 120.87984 * 179.97438 * 21 20 19 23 23 C 1.40172 * 120.35410 * 0.03201 * 22 21 20 24 24 C 1.35675 * 119.27683 * 359.97031 * 23 22 21 25 25 N 1.36175 * 119.02707 * 0.02562 * 24 23 22 26 26 N 1.31982 * 125.32326 * 179.71612 * 18 16 15 27 27 C 1.38298 * 120.14326 * 0.25695 * 13 12 11 28 28 C 1.38111 * 120.06447 * 359.44743 * 27 13 12 29 29 H 0.97000 * 119.99823 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.03543 * 0.02562 * 11 10 9 31 31 H 1.08004 * 119.96668 * 180.02562 * 12 11 10 32 32 H 1.09000 * 109.47468 * 330.00338 * 14 13 12 33 33 H 1.09001 * 109.47115 * 210.00399 * 14 13 12 34 34 H 0.96998 * 119.99687 * 359.97438 * 15 14 13 35 35 H 1.08000 * 119.81961 * 179.97438 * 22 21 20 36 36 H 1.08006 * 120.36065 * 179.97438 * 23 22 21 37 37 H 1.08003 * 120.48838 * 180.02562 * 24 23 22 38 38 H 1.07994 * 119.96878 * 179.70329 * 27 13 12 39 39 H 1.07993 * 120.03462 * 180.27464 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4401 0.7002 7 6 2.0088 -1.2007 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0011 10 6 3.9734 -2.4057 -0.1051 11 6 3.2234 -3.5745 -0.0922 12 6 3.8534 -4.7986 -0.1999 13 6 5.2298 -4.8615 -0.3199 14 6 5.9140 -6.1991 -0.4366 15 7 6.0187 -6.5725 -1.8494 16 6 6.5944 -7.7404 -2.1968 17 8 7.0314 -8.4815 -1.3386 18 6 6.6948 -8.1208 -3.6250 19 7 6.2530 -7.3904 -4.6510 20 6 6.5003 -8.0215 -5.7895 21 7 6.2545 -7.7060 -7.0682 22 6 6.6042 -8.5149 -8.0409 23 6 7.2437 -9.7295 -7.7568 24 6 7.4977 -10.0594 -6.4655 25 7 7.1231 -9.1998 -5.4780 26 7 7.2403 -9.2322 -4.0822 27 6 5.9800 -3.6997 -0.3272 28 6 5.3554 -2.4721 -0.2261 29 1 -0.4850 0.8401 -0.0004 30 1 2.1486 -3.5261 0.0019 31 1 3.2706 -5.7079 -0.1903 32 1 5.3332 -6.9521 0.0961 33 1 6.9119 -6.1358 -0.0027 34 1 5.6697 -5.9811 -2.5345 35 1 6.3973 -8.2436 -9.0656 36 1 7.5312 -10.3954 -8.5571 37 1 7.9897 -10.9901 -6.2243 38 1 7.0550 -3.7522 -0.4163 39 1 5.9413 -1.5650 -0.2363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464760994.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:48 Heat of formation + Delta-G solvation = 89.717745 kcal Electronic energy + Delta-G solvation = -26589.820728 eV Core-core repulsion = 22500.569972 eV Total energy + Delta-G solvation = -4089.250756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.12533 -41.21615 -40.76632 -39.61186 -38.61113 -35.99882 -35.64891 -34.45811 -32.68955 -32.01804 -31.87849 -31.50678 -28.18835 -27.07337 -25.91970 -25.12052 -24.18870 -23.72784 -22.11631 -21.72185 -19.89747 -19.75701 -19.41785 -19.11701 -18.53025 -17.97212 -17.16805 -16.92305 -16.80425 -16.39608 -16.07943 -15.76615 -15.64278 -15.46726 -15.33502 -14.79757 -14.52942 -14.31123 -14.25366 -14.08017 -13.93660 -13.89614 -13.47770 -13.20531 -13.13009 -12.62641 -12.48045 -12.36507 -11.94744 -11.79204 -11.63186 -11.31364 -11.08066 -10.98247 -10.91755 -10.30322 -10.06555 -9.84284 -9.12609 -8.51034 -6.24128 -0.72756 -0.51733 0.37821 0.54178 0.57323 0.64859 1.32107 1.35743 1.52247 1.67949 1.90470 2.17608 2.27613 2.32602 2.72213 2.91182 3.04366 3.13889 3.29132 3.47708 3.77749 3.95785 3.99290 4.12824 4.23334 4.36228 4.40470 4.47501 4.52471 4.65499 4.77601 4.80188 4.93892 4.95782 5.09946 5.20949 5.24016 5.32226 5.52268 5.68431 5.77605 5.87281 6.07854 6.18389 6.28560 6.56077 6.81341 6.82899 7.55396 8.60241 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016066 B = 0.002071 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.435422 B =13519.449456 C =14627.167358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.083 0.917 9 O -0.241 6.241 10 C 0.131 3.869 11 C -0.239 4.239 12 C -0.048 4.048 13 C -0.178 4.178 14 C 0.181 3.819 15 N -0.685 5.685 16 C 0.611 3.389 17 O -0.541 6.541 18 C 0.226 3.774 19 N -0.533 5.533 20 C 0.424 3.576 21 N -0.490 5.490 22 C 0.219 3.781 23 C -0.175 4.175 24 C 0.142 3.858 25 N -0.330 5.330 26 N -0.297 5.297 27 C -0.043 4.043 28 C -0.192 4.192 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.135 0.865 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.417 0.583 35 H 0.242 0.758 36 H 0.238 0.762 37 H 0.218 0.782 38 H 0.156 0.844 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.345 -21.857 -19.426 34.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.100 0.900 9 O -0.148 6.148 10 C 0.081 3.919 11 C -0.258 4.258 12 C -0.067 4.067 13 C -0.179 4.179 14 C 0.059 3.941 15 N -0.336 5.336 16 C 0.392 3.608 17 O -0.416 6.416 18 C -0.058 4.058 19 N -0.269 5.269 20 C 0.064 3.936 21 N -0.207 5.207 22 C 0.036 3.964 23 C -0.199 4.199 24 C 0.008 3.992 25 N -0.111 5.111 26 N -0.132 5.132 27 C -0.061 4.061 28 C -0.211 4.211 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.153 0.847 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.254 0.746 35 H 0.258 0.742 36 H 0.254 0.746 37 H 0.235 0.765 38 H 0.174 0.826 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 18.244 -21.345 -18.050 33.381 hybrid contribution -0.471 0.310 -0.081 0.569 sum 17.774 -21.036 -18.131 32.972 Atomic orbital electron populations 1.69728 1.06930 1.29663 1.49820 1.25302 0.95899 1.02243 0.95446 0.85213 0.78834 0.77349 0.79301 1.19064 1.19252 1.18573 1.20717 0.78023 0.96188 1.52707 0.89984 1.83522 1.21321 1.27480 1.82450 1.19750 0.93279 0.85060 0.93791 1.21267 1.00360 0.93021 1.11168 1.20946 0.94342 0.96380 0.95017 1.19482 0.93108 0.94476 1.10876 1.20199 1.01446 0.92580 0.79840 1.45989 1.57851 1.19262 1.10515 1.16387 0.79063 0.82266 0.83103 1.90820 1.49035 1.52283 1.49439 1.24019 0.96117 0.89921 0.95766 1.70712 1.29608 1.31026 0.95542 1.22859 0.93617 0.83251 0.93828 1.68244 1.23400 1.34431 0.94626 1.24774 0.84311 0.87573 0.99749 1.22793 1.01325 1.00076 0.95702 1.23273 0.94781 0.95774 0.85369 1.49106 1.38130 1.17379 1.06446 1.78733 1.27821 1.21371 0.85294 1.20981 1.00478 0.89855 0.94798 1.20523 0.90482 0.99819 1.10295 0.90525 0.87172 0.84702 0.89843 0.88913 0.74578 0.74197 0.74600 0.76502 0.82649 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.06 13.96 21.61 0.30 -54.76 16 2 C 0.01 0.57 5.49 84.83 0.47 1.03 16 3 Si 0.97 45.35 28.62 68.60 1.96 47.31 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.40 -23.49 9.95 67.92 0.68 -22.82 16 8 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 9 O -0.24 -12.95 8.59 -22.76 -0.20 -13.14 16 10 C 0.13 6.01 6.65 22.58 0.15 6.16 16 11 C -0.24 -10.32 9.17 22.39 0.21 -10.11 16 12 C -0.05 -1.64 9.69 22.25 0.22 -1.42 16 13 C -0.18 -5.18 5.25 -19.83 -0.10 -5.29 16 14 C 0.18 4.48 5.80 85.63 0.50 4.98 16 15 N -0.68 -18.12 5.55 -469.41 -2.60 -20.73 16 16 C 0.61 18.41 7.84 86.87 0.68 19.09 16 17 O -0.54 -18.63 17.07 -3.78 -0.06 -18.70 16 18 C 0.23 6.77 7.92 137.40 1.09 7.86 16 19 N -0.53 -15.94 10.89 -192.62 -2.10 -18.04 16 20 C 0.42 10.33 8.99 261.57 2.35 12.68 16 21 N -0.49 -8.70 10.48 -197.54 -2.07 -10.77 16 22 C 0.22 0.74 11.27 85.25 0.96 1.70 16 23 C -0.18 0.34 10.06 22.15 0.22 0.56 16 24 C 0.14 0.87 11.32 83.42 0.94 1.81 16 25 N -0.33 -6.59 3.91 -197.58 -0.77 -7.37 16 26 N -0.30 -8.26 12.78 -52.60 -0.67 -8.93 16 27 C -0.04 -1.26 9.69 22.25 0.22 -1.04 16 28 C -0.19 -7.07 9.99 22.39 0.22 -6.85 16 29 H 0.29 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.11 5.27 5.64 -2.91 -0.02 5.25 16 31 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16 33 H 0.09 2.08 8.08 -2.39 -0.02 2.07 16 34 H 0.42 11.09 8.13 -92.71 -0.75 10.34 16 35 H 0.24 -1.69 8.06 -2.91 -0.02 -1.72 16 36 H 0.24 -3.21 8.06 -2.91 -0.02 -3.23 16 37 H 0.22 -0.27 8.06 -2.91 -0.02 -0.29 16 38 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -87.35 354.27 2.96 -84.39 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.38 Total: 12.39 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 8.79 Total: 8.34 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -7.91 Total: -120.59 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.26 Total: -31.84 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.96 Total: 47.31 kcal Total: -87.35 2.96 -84.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464760994.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.106 kcal (2) G-P(sol) polarization free energy of solvation -87.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds