Wall clock time and date at job start Tue Mar 31 2020 22:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00170 * 2 1 4 4 H 1.48498 * 109.46862 * 269.99630 * 3 2 1 5 5 H 1.48503 * 109.47051 * 29.99552 * 3 2 1 6 6 H 1.48504 * 109.47274 * 149.99270 * 3 2 1 7 7 C 1.38817 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99762 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00249 * 173.47569 * 9 7 2 11 11 C 1.52998 * 109.53720 * 301.74888 * 10 9 7 12 12 N 1.46496 * 109.47616 * 305.05471 * 11 10 9 13 13 C 1.34775 * 120.00251 * 175.67756 * 12 11 10 14 14 O 1.21521 * 120.00332 * 359.97438 * 13 12 11 15 15 C 1.48078 * 119.99763 * 180.02562 * 13 12 11 16 16 C 1.39869 * 120.93242 * 359.97438 * 15 13 12 17 17 C 1.38084 * 119.01542 * 180.02562 * 16 15 13 18 18 N 1.31844 * 120.94369 * 359.97438 * 17 16 15 19 19 C 1.31761 * 122.07351 * 0.02562 * 18 17 16 20 20 C 1.38362 * 120.86734 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 120.51612 * 179.97438 * 20 19 18 22 22 C 1.53172 * 109.54291 * 61.92244 * 10 9 7 23 23 C 1.53109 * 109.15873 * 63.06788 * 22 10 9 24 24 O 1.42902 * 109.48354 * 57.47145 * 23 22 10 25 25 C 1.42910 * 114.10055 * 298.89346 * 24 23 22 26 26 C 1.53086 * 109.41391 * 61.15683 * 25 24 23 27 27 H 0.96998 * 119.99919 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99707 * 353.47160 * 9 7 2 29 29 H 1.09007 * 109.47082 * 185.05244 * 11 10 9 30 30 H 1.09004 * 109.47628 * 65.06066 * 11 10 9 31 31 H 0.97010 * 119.99652 * 355.67994 * 12 11 10 32 32 H 1.07993 * 120.48993 * 0.05019 * 16 15 13 33 33 H 1.08004 * 119.53024 * 179.72657 * 17 16 15 34 34 H 1.07997 * 119.56689 * 179.97438 * 19 18 17 35 35 H 1.08999 * 109.52366 * 182.88468 * 22 10 9 36 36 H 1.09004 * 109.52515 * 303.07329 * 22 10 9 37 37 H 1.09001 * 109.40519 * 297.49444 * 23 22 10 38 38 H 1.08996 * 109.49599 * 177.50710 * 23 22 10 39 39 H 1.08999 * 109.47643 * 301.17308 * 25 24 23 40 40 H 1.09003 * 109.48936 * 181.15063 * 25 24 23 41 41 H 1.08999 * 109.52107 * 182.49177 * 26 25 24 42 42 H 1.08996 * 109.57583 * 62.33092 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4626 0.1458 11 6 3.7104 -3.1402 1.4574 12 7 3.9198 -2.2116 2.5710 13 6 3.5510 -2.5619 3.8191 14 8 3.0444 -3.6480 4.0207 15 6 3.7622 -1.6230 4.9445 16 6 4.3430 -0.3681 4.7345 17 6 4.5219 0.4760 5.8125 18 7 4.1535 0.1139 7.0256 19 6 3.6029 -1.0582 7.2689 20 6 3.3863 -1.9664 6.2478 21 17 2.6607 -3.5083 6.5788 22 6 3.7804 -3.3860 -1.0305 23 6 4.2592 -2.7349 -2.3309 24 8 5.6613 -2.4728 -2.2446 25 6 6.0238 -1.5767 -1.1921 26 6 5.6180 -2.1822 0.1541 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3676 -0.0944 29 1 4.3202 -4.0312 1.6078 30 1 2.6587 -3.4231 1.4131 31 1 4.3238 -1.3445 2.4100 32 1 4.6467 -0.0637 3.7438 33 1 4.9736 1.4452 5.6606 34 1 3.3168 -1.3133 8.2786 35 1 4.2853 -4.3427 -0.8962 36 1 2.7030 -3.5449 -1.0763 37 1 3.7232 -1.7985 -2.4858 38 1 4.0658 -3.4070 -3.1669 39 1 5.5109 -0.6252 -1.3321 40 1 7.1016 -1.4144 -1.2076 41 1 5.8534 -1.4811 0.9547 42 1 6.1610 -3.1136 0.3142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500587028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:33 Heat of formation + Delta-G solvation = -25.518260 kcal Electronic energy + Delta-G solvation = -28094.333217 eV Core-core repulsion = 24101.192946 eV Total energy + Delta-G solvation = -3993.140270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.68987 -39.69142 -38.63347 -36.58599 -36.01318 -33.78779 -32.80738 -32.11125 -31.21480 -30.84884 -29.93430 -27.29348 -24.81246 -23.97235 -23.63277 -23.09868 -22.11740 -20.49695 -18.89651 -18.17484 -17.94488 -16.93066 -16.32183 -15.88620 -15.68511 -15.51546 -15.31486 -15.10873 -14.68770 -14.44150 -14.32731 -14.24850 -13.93132 -13.45571 -13.14281 -12.87036 -12.49652 -12.38893 -12.35257 -12.03718 -11.96738 -11.59337 -11.18844 -11.12470 -11.06725 -11.00855 -10.49844 -10.29758 -10.19419 -10.00344 -9.96286 -9.74968 -9.34601 -9.25248 -9.13237 -8.99235 -8.63372 -7.49117 -5.91114 -3.30640 0.48022 0.70873 2.00051 2.95706 3.16248 3.22879 3.27848 3.32285 3.66040 4.14285 4.17655 4.41783 4.42010 4.55370 4.65854 4.89476 4.95293 4.99183 5.08736 5.25694 5.30855 5.36432 5.48202 5.51710 5.53049 5.61447 5.78097 5.87824 5.92582 6.05935 6.08331 6.17311 6.17850 6.35773 6.44146 6.53821 6.60916 6.77945 7.51533 7.54140 7.74022 7.81586 8.26027 8.40961 9.01302 9.72913 9.90472 11.26397 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011202 B = 0.004278 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.909573 B = 6544.191568 C = 7356.279562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.877 3.123 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.092 0.908 9 N -0.738 5.738 10 C 0.195 3.805 11 C 0.122 3.878 12 N -0.691 5.691 13 C 0.548 3.452 14 O -0.517 6.517 15 C -0.073 4.073 16 C -0.128 4.128 17 C 0.096 3.904 18 N -0.459 5.459 19 C 0.106 3.894 20 C -0.045 4.045 21 Cl -0.017 7.017 22 C -0.153 4.153 23 C 0.069 3.931 24 O -0.390 6.390 25 C 0.066 3.934 26 C -0.156 4.156 27 H 0.260 0.740 28 H 0.360 0.640 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.397 0.603 32 H 0.147 0.853 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.724 -2.020 7.709 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.184 4.184 3 Si 0.707 3.293 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.110 0.890 9 N -0.382 5.382 10 C 0.103 3.897 11 C -0.004 4.004 12 N -0.341 5.341 13 C 0.333 3.667 14 O -0.393 6.393 15 C -0.084 4.084 16 C -0.149 4.149 17 C -0.060 4.060 18 N -0.168 5.168 19 C -0.053 4.053 20 C -0.075 4.075 21 Cl 0.012 6.988 22 C -0.193 4.193 23 C -0.008 4.008 24 O -0.309 6.309 25 C -0.011 4.011 26 C -0.194 4.194 27 H 0.071 0.929 28 H 0.194 0.806 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.233 0.767 32 H 0.165 0.835 33 H 0.185 0.815 34 H 0.187 0.813 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.284 -2.514 8.418 15.102 hybrid contribution 0.137 1.276 -0.606 1.419 sum 12.421 -1.238 7.812 14.726 Atomic orbital electron populations 1.69683 1.05099 1.25856 1.56559 1.24669 0.95081 0.96936 1.01710 0.86708 0.79081 0.85642 0.77858 1.21084 1.21770 1.20480 1.18889 0.80108 0.94614 1.43717 0.88986 1.42843 1.04218 1.02253 1.88853 1.19810 0.89732 0.88033 0.92103 1.21828 1.02367 0.90741 0.85435 1.45574 1.61731 1.20454 1.06371 1.17866 0.79711 0.86463 0.82709 1.90839 1.42357 1.22155 1.83940 1.20445 0.98769 0.95542 0.93693 1.22443 0.97964 0.92803 1.01641 1.22830 0.96154 0.99781 0.87253 1.67671 1.09126 1.16207 1.23788 1.22826 0.95399 0.88147 0.98897 1.22258 0.99736 0.91202 0.94317 1.98425 1.80214 1.25282 1.94896 1.22462 1.02870 0.98110 0.95901 1.22483 0.80806 1.00614 0.96877 1.87833 1.24850 1.66119 1.52122 1.22443 0.99594 0.92553 0.86515 1.22425 0.96628 1.02087 0.98284 0.92946 0.80597 0.92468 0.90339 0.76745 0.83545 0.81481 0.81326 0.92208 0.89834 0.91666 0.89882 0.93103 0.89701 0.91432 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.29 13.97 55.49 0.78 -26.52 16 2 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 3 Si 0.88 19.92 27.67 -169.99 -4.70 15.21 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -5.62 6.62 56.52 0.37 -5.24 16 7 C -0.24 -5.93 9.18 -15.06 -0.14 -6.07 16 8 H 0.09 2.50 6.99 -52.48 -0.37 2.13 16 9 N -0.74 -14.18 3.58 -47.06 -0.17 -14.35 16 10 C 0.19 3.09 0.41 -131.64 -0.05 3.04 16 11 C 0.12 2.02 4.30 -4.04 -0.02 2.00 16 12 N -0.69 -10.98 5.12 -61.18 -0.31 -11.30 16 13 C 0.55 9.34 7.79 -12.22 -0.10 9.24 16 14 O -0.52 -10.15 14.17 5.35 0.08 -10.07 16 15 C -0.07 -1.06 5.91 -104.62 -0.62 -1.68 16 16 C -0.13 -1.54 9.61 -39.03 -0.38 -1.91 16 17 C 0.10 1.05 11.17 -17.60 -0.20 0.85 16 18 N -0.46 -5.59 10.33 -13.27 -0.14 -5.72 16 19 C 0.11 1.25 10.99 -17.54 -0.19 1.06 16 20 C -0.04 -0.62 6.38 -38.90 -0.25 -0.87 16 21 Cl -0.02 -0.25 26.24 -51.86 -1.36 -1.61 16 22 C -0.15 -2.41 4.84 -26.59 -0.13 -2.53 16 23 C 0.07 1.06 6.68 37.21 0.25 1.31 16 24 O -0.39 -5.98 10.77 -35.23 -0.38 -6.36 16 25 C 0.07 0.88 6.67 37.20 0.25 1.13 16 26 C -0.16 -2.02 4.80 -26.60 -0.13 -2.15 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.36 6.86 4.63 -40.82 -0.19 6.67 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.56 7.50 -51.93 -0.39 1.17 16 31 H 0.40 5.72 5.45 -40.82 -0.22 5.50 16 32 H 0.15 1.50 6.54 -52.49 -0.34 1.16 16 33 H 0.17 1.29 8.06 -52.48 -0.42 0.86 16 34 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.47 7.17 -51.93 -0.37 1.10 16 37 H 0.07 1.15 7.75 -51.93 -0.40 0.75 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.73 7.07 -51.93 -0.37 0.36 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.78 7.20 -51.93 -0.37 0.41 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -30.94 352.33 -7.84 -38.78 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -5.15 Total: 12.96 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -1.79 Total: 3.66 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.16 Total: -57.89 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.30 Total: -16.43 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.70 Total: 15.21 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.36 Total: -1.61 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.94 -7.84 -38.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500587028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.264 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds