Wall clock time and date at job start Tue Mar 31 2020 22:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00170 * 2 1 4 4 H 1.48498 * 109.46862 * 269.99630 * 3 2 1 5 5 H 1.48503 * 109.47051 * 29.99552 * 3 2 1 6 6 H 1.48504 * 109.47274 * 149.99270 * 3 2 1 7 7 C 1.38817 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99762 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00249 * 173.47569 * 9 7 2 11 11 C 1.52998 * 109.53720 * 301.74888 * 10 9 7 12 12 N 1.46496 * 109.47616 * 305.05471 * 11 10 9 13 13 C 1.34775 * 120.00251 * 175.67756 * 12 11 10 14 14 O 1.21521 * 120.00332 * 359.97438 * 13 12 11 15 15 C 1.48078 * 119.99763 * 180.02562 * 13 12 11 16 16 C 1.39869 * 120.93242 * 359.97438 * 15 13 12 17 17 C 1.38084 * 119.01542 * 180.02562 * 16 15 13 18 18 N 1.31844 * 120.94369 * 359.97438 * 17 16 15 19 19 C 1.31761 * 122.07351 * 0.02562 * 18 17 16 20 20 C 1.38362 * 120.86734 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 120.51612 * 179.97438 * 20 19 18 22 22 C 1.53172 * 109.54291 * 61.92244 * 10 9 7 23 23 C 1.53109 * 109.15873 * 63.06788 * 22 10 9 24 24 O 1.42902 * 109.48354 * 57.47145 * 23 22 10 25 25 C 1.42910 * 114.10055 * 298.89346 * 24 23 22 26 26 C 1.53086 * 109.41391 * 61.15683 * 25 24 23 27 27 H 0.96998 * 119.99919 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99707 * 353.47160 * 9 7 2 29 29 H 1.09007 * 109.47082 * 185.05244 * 11 10 9 30 30 H 1.09004 * 109.47628 * 65.06066 * 11 10 9 31 31 H 0.97010 * 119.99652 * 355.67994 * 12 11 10 32 32 H 1.07993 * 120.48993 * 0.05019 * 16 15 13 33 33 H 1.08004 * 119.53024 * 179.72657 * 17 16 15 34 34 H 1.07997 * 119.56689 * 179.97438 * 19 18 17 35 35 H 1.08999 * 109.52366 * 182.88468 * 22 10 9 36 36 H 1.09004 * 109.52515 * 303.07329 * 22 10 9 37 37 H 1.09001 * 109.40519 * 297.49444 * 23 22 10 38 38 H 1.08996 * 109.49599 * 177.50710 * 23 22 10 39 39 H 1.08999 * 109.47643 * 301.17308 * 25 24 23 40 40 H 1.09003 * 109.48936 * 181.15063 * 25 24 23 41 41 H 1.08999 * 109.52107 * 182.49177 * 26 25 24 42 42 H 1.08996 * 109.57583 * 62.33092 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4626 0.1458 11 6 3.7104 -3.1402 1.4574 12 7 3.9198 -2.2116 2.5710 13 6 3.5510 -2.5619 3.8191 14 8 3.0444 -3.6480 4.0207 15 6 3.7622 -1.6230 4.9445 16 6 4.3430 -0.3681 4.7345 17 6 4.5219 0.4760 5.8125 18 7 4.1535 0.1139 7.0256 19 6 3.6029 -1.0582 7.2689 20 6 3.3863 -1.9664 6.2478 21 17 2.6607 -3.5083 6.5788 22 6 3.7804 -3.3860 -1.0305 23 6 4.2592 -2.7349 -2.3309 24 8 5.6613 -2.4728 -2.2446 25 6 6.0238 -1.5767 -1.1921 26 6 5.6180 -2.1822 0.1541 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3676 -0.0944 29 1 4.3202 -4.0312 1.6078 30 1 2.6587 -3.4231 1.4131 31 1 4.3238 -1.3445 2.4100 32 1 4.6467 -0.0637 3.7438 33 1 4.9736 1.4452 5.6606 34 1 3.3168 -1.3133 8.2786 35 1 4.2853 -4.3427 -0.8962 36 1 2.7030 -3.5449 -1.0763 37 1 3.7232 -1.7985 -2.4858 38 1 4.0658 -3.4070 -3.1669 39 1 5.5109 -0.6252 -1.3321 40 1 7.1016 -1.4144 -1.2076 41 1 5.8534 -1.4811 0.9547 42 1 6.1610 -3.1136 0.3142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500587028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:33 Heat of formation + Delta-G solvation = -47.854341 kcal Electronic energy + Delta-G solvation = -28095.301782 eV Core-core repulsion = 24101.192946 eV Total energy + Delta-G solvation = -3994.108835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.76951 -40.91262 -39.87025 -37.66095 -37.36044 -35.28335 -34.23690 -33.45415 -32.15507 -32.01222 -31.64213 -28.56883 -25.98666 -25.58254 -24.62664 -24.37176 -23.35352 -21.76149 -20.21935 -19.80253 -19.38398 -17.98918 -17.32938 -17.11139 -16.86807 -16.76539 -16.53979 -16.43296 -16.14135 -15.83914 -15.54542 -15.17042 -15.09574 -14.92179 -14.53455 -14.26655 -14.13353 -13.75719 -13.33169 -13.18831 -13.05255 -12.95165 -12.88798 -12.68750 -12.29012 -12.19135 -12.10472 -11.72833 -11.56545 -11.35385 -11.17161 -11.04201 -10.94815 -10.50626 -10.37333 -10.11688 -9.97845 -9.31549 -7.95609 -5.31747 -0.56800 -0.20142 0.97075 1.35394 1.42916 1.50665 1.77065 2.06315 2.52070 2.62199 3.05157 3.31541 3.33629 3.42480 3.47908 3.52975 3.68072 3.79164 3.88136 4.04700 4.08588 4.19520 4.43019 4.46401 4.51787 4.57989 4.69247 4.70756 4.75989 4.79405 4.87204 4.99872 5.06708 5.17520 5.25732 5.27904 5.31524 5.44566 5.85085 6.25438 6.35037 6.47176 6.63819 7.12161 7.12974 7.82698 8.04093 9.25688 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011202 B = 0.004278 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.909573 B = 6544.191568 C = 7356.279562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.063 4.063 3 Si 0.941 3.059 4 H -0.287 1.287 5 H -0.309 1.309 6 H -0.228 1.228 7 C -0.204 4.204 8 H 0.051 0.949 9 N -0.732 5.732 10 C 0.192 3.808 11 C 0.129 3.871 12 N -0.685 5.685 13 C 0.542 3.458 14 O -0.552 6.552 15 C -0.095 4.095 16 C -0.124 4.124 17 C 0.105 3.895 18 N -0.467 5.467 19 C 0.111 3.889 20 C -0.061 4.061 21 Cl -0.034 7.034 22 C -0.152 4.152 23 C 0.075 3.925 24 O -0.395 6.395 25 C 0.059 3.941 26 C -0.148 4.148 27 H 0.252 0.748 28 H 0.368 0.632 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.406 0.594 32 H 0.168 0.832 33 H 0.206 0.794 34 H 0.193 0.807 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.098 0.902 39 H 0.042 0.958 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.646 -0.407 8.305 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.254 4.254 3 Si 0.769 3.231 4 H -0.214 1.214 5 H -0.237 1.237 6 H -0.152 1.152 7 C -0.335 4.335 8 H 0.069 0.931 9 N -0.376 5.376 10 C 0.102 3.898 11 C 0.004 3.996 12 N -0.336 5.336 13 C 0.328 3.672 14 O -0.431 6.431 15 C -0.107 4.107 16 C -0.145 4.145 17 C -0.052 4.052 18 N -0.176 5.176 19 C -0.046 4.046 20 C -0.091 4.091 21 Cl -0.004 7.004 22 C -0.192 4.192 23 C -0.002 4.002 24 O -0.314 6.314 25 C -0.017 4.017 26 C -0.186 4.186 27 H 0.061 0.939 28 H 0.202 0.798 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.244 0.756 32 H 0.185 0.815 33 H 0.223 0.777 34 H 0.210 0.790 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.116 0.884 39 H 0.061 0.939 40 H 0.136 0.864 41 H 0.108 0.892 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.298 -0.918 9.019 18.650 hybrid contribution -1.056 0.676 -0.804 1.490 sum 15.242 -0.242 8.216 17.317 Atomic orbital electron populations 1.69903 1.07516 1.26194 1.60147 1.25444 0.95770 1.01025 1.03126 0.85630 0.79579 0.80057 0.77849 1.21416 1.23710 1.15170 1.18676 0.82261 0.92666 1.39907 0.93087 1.42706 1.02282 1.04017 1.88548 1.20017 0.91936 0.86415 0.91456 1.21669 1.00012 0.91821 0.86133 1.45500 1.61490 1.20680 1.05896 1.18325 0.78915 0.86492 0.83470 1.90815 1.43894 1.23833 1.84552 1.20409 1.00828 0.96450 0.93010 1.22699 0.97085 0.91592 1.03108 1.23465 0.94649 1.00737 0.86299 1.67789 1.09257 1.16011 1.24541 1.23175 0.94460 0.87581 0.99432 1.22440 1.00700 0.91161 0.94821 1.98415 1.80616 1.26474 1.94936 1.22422 1.01224 0.99271 0.96259 1.22362 0.81142 0.99586 0.97077 1.87841 1.23900 1.66565 1.53071 1.22686 1.01524 0.91678 0.85816 1.22406 0.93330 1.03713 0.99119 0.93901 0.79751 0.90818 0.94750 0.75606 0.81499 0.77706 0.79022 0.90092 0.92868 0.94254 0.88416 0.93935 0.86360 0.89154 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -60.89 13.97 21.65 0.30 -60.59 16 2 C -0.06 -3.39 5.50 84.86 0.47 -2.93 16 3 Si 0.94 40.52 27.67 68.60 1.90 42.42 16 4 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.31 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.23 -7.83 6.62 99.48 0.66 -7.17 16 7 C -0.20 -10.15 9.18 84.04 0.77 -9.38 16 8 H 0.05 2.95 6.99 -2.91 -0.02 2.93 16 9 N -0.73 -27.17 3.58 -302.81 -1.08 -28.26 16 10 C 0.19 5.80 0.41 3.72 0.00 5.80 16 11 C 0.13 4.24 4.30 86.38 0.37 4.61 16 12 N -0.68 -20.85 5.12 -465.75 -2.39 -23.24 16 13 C 0.54 18.28 7.79 86.86 0.68 18.96 16 14 O -0.55 -22.21 14.17 -3.78 -0.05 -22.27 16 15 C -0.10 -2.66 5.91 -19.86 -0.12 -2.78 16 16 C -0.12 -2.59 9.61 22.63 0.22 -2.37 16 17 C 0.10 1.87 11.17 84.65 0.95 2.82 16 18 N -0.47 -9.93 10.33 -195.90 -2.02 -11.95 16 19 C 0.11 2.42 10.99 84.73 0.93 3.35 16 20 C -0.06 -1.65 6.38 22.71 0.14 -1.50 16 21 Cl -0.03 -0.98 26.24 -2.72 -0.07 -1.05 16 22 C -0.15 -4.68 4.84 30.69 0.15 -4.53 16 23 C 0.08 2.23 6.68 72.02 0.48 2.72 16 24 O -0.39 -10.87 10.77 -148.98 -1.60 -12.48 16 25 C 0.06 1.33 6.67 72.01 0.48 1.81 16 26 C -0.15 -3.22 4.80 30.68 0.15 -3.07 16 27 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.37 12.83 4.63 -92.71 -0.43 12.40 16 29 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.03 1.43 7.50 -2.38 -0.02 1.42 16 31 H 0.41 10.50 5.45 -92.70 -0.50 9.99 16 32 H 0.17 2.67 6.54 -2.91 -0.02 2.65 16 33 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.19 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.05 1.96 7.17 -2.38 -0.02 1.94 16 37 H 0.04 1.37 7.75 -2.39 -0.02 1.35 16 38 H 0.10 2.58 8.14 -2.39 -0.02 2.57 16 39 H 0.04 1.04 7.07 -2.39 -0.02 1.02 16 40 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.09 1.61 7.20 -2.39 -0.02 1.59 16 42 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -71.84 352.33 0.74 -71.10 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.10 Total: 32.81 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 5.67 Total: 13.51 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -5.19 Total: -124.04 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.66 Total: -34.74 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.90 Total: 42.42 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.07 Total: -1.05 kcal Total: -71.84 0.74 -71.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500587028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.246 kcal (2) G-P(sol) polarization free energy of solvation -71.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds