Wall clock time and date at job start Tue Mar 31 2020 22:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38643 * 120.79978 * 2 1 4 4 C 1.38185 * 119.17943 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.60290 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47062 * 125.00509 * 5 4 3 7 7 O 1.21280 * 120.00094 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99966 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99776 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47067 * 179.97438 * 9 8 6 11 11 O 1.42899 * 112.94705 * 53.40977 * 10 9 8 12 12 C 1.53953 * 113.74319 * 281.67537 * 10 9 8 13 13 N 1.47587 * 86.11713 * 222.04657 * 12 10 9 14 14 C 1.36929 * 134.49154 * 204.63772 * 13 12 10 15 15 H 1.07993 * 120.00119 * 173.48281 * 14 13 12 16 16 C 1.38815 * 120.00039 * 353.48536 * 14 13 12 17 17 N 1.31624 * 120.00014 * 5.06674 * 16 14 13 18 18 Si 1.86802 * 120.00245 * 185.06446 * 16 14 13 19 19 H 1.48504 * 109.46955 * 94.98714 * 18 16 14 20 20 H 1.48493 * 109.47192 * 214.98622 * 18 16 14 21 21 H 1.48504 * 109.46698 * 334.98744 * 18 16 14 22 22 C 1.47581 * 91.01520 * 24.64118 * 13 12 10 23 23 N 1.31875 * 120.79715 * 0.02562 * 4 3 2 24 24 C 1.31849 * 121.73767 * 0.02562 * 23 4 3 25 25 C 1.38349 * 120.74209 * 359.97438 * 24 23 4 26 26 Cl 1.73605 * 120.43290 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.47038 * 270.02539 * 1 2 3 28 28 H 1.08998 * 109.46616 * 30.01980 * 1 2 3 29 29 H 1.08994 * 109.47218 * 150.02113 * 1 2 3 30 30 H 1.08001 * 120.40813 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47381 * 245.00556 * 5 4 3 32 32 H 1.09002 * 109.47335 * 5.00670 * 5 4 3 33 33 H 0.96997 * 120.00304 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.47418 * 300.00089 * 9 8 6 35 35 H 1.09007 * 109.47443 * 59.99935 * 9 8 6 36 36 H 0.96703 * 113.99760 * 309.67199 * 11 10 9 37 37 H 1.08995 * 113.76444 * 336.34807 * 12 10 9 38 38 H 1.08999 * 113.76691 * 107.74477 * 12 10 9 39 39 H 0.97000 * 119.99818 * 180.02562 * 17 16 14 40 40 H 1.08998 * 113.76903 * 221.06277 * 22 13 12 41 41 H 1.09004 * 113.87328 * 89.67271 * 22 13 12 42 42 H 1.07999 * 119.62895 * 180.27819 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1909 0.0000 4 6 3.5982 1.1518 0.0005 5 6 4.3794 2.4406 0.0011 6 6 5.3364 2.4474 1.1653 7 8 5.3794 1.4993 1.9205 8 7 6.1436 3.5075 1.3679 9 6 7.0734 3.5143 2.4999 10 6 7.8666 4.8226 2.5005 11 8 7.0307 5.9810 2.4634 12 6 9.0155 4.8514 1.4761 13 7 9.8143 5.4900 2.5402 14 6 10.9074 6.3146 2.5556 15 1 11.2509 6.7385 3.4876 16 6 11.5740 6.6057 1.3733 17 7 11.0984 6.1714 0.2255 18 14 13.1461 7.6139 1.4113 19 1 14.3183 6.7024 1.4334 20 1 13.2113 8.4749 0.2031 21 1 13.1585 8.4659 2.6275 22 6 8.9619 4.8830 3.5807 23 7 4.2411 0.0004 0.0005 24 6 3.6002 -1.1518 -0.0005 25 6 2.2173 -1.1918 -0.0010 26 17 1.3816 -2.7135 -0.0017 27 1 -0.3633 0.0005 1.0276 28 1 -0.3632 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 1.6968 2.1374 0.0004 31 1 4.9395 2.5264 -0.9300 32 1 3.6923 3.2820 0.0907 33 1 6.1090 4.2659 0.7642 34 1 6.5131 3.4283 3.4309 35 1 7.7609 2.6730 2.4106 36 1 6.3600 5.9598 1.7671 37 1 9.3745 3.8625 1.1908 38 1 8.8252 5.4994 0.6206 39 1 11.5644 6.3745 -0.6006 40 1 8.7287 5.5563 4.4055 41 1 9.3038 3.9034 3.9150 42 1 4.1610 -2.0748 0.0041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500863434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:34 Heat of formation + Delta-G solvation = 1.782376 kcal Electronic energy + Delta-G solvation = -26084.061070 eV Core-core repulsion = 22092.104645 eV Total energy + Delta-G solvation = -3991.956426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89056 -39.67014 -38.52742 -37.01362 -34.90734 -34.34274 -33.95948 -33.04886 -31.98796 -29.33328 -28.30375 -27.85482 -25.76770 -24.98307 -23.65149 -22.35703 -21.58412 -20.35853 -19.34116 -17.80686 -17.18698 -16.97086 -16.69483 -16.42069 -15.76842 -15.44634 -15.19184 -15.00544 -14.61665 -14.13751 -13.97033 -13.78211 -13.59951 -13.37509 -13.19339 -13.06614 -13.05873 -12.69575 -12.45321 -12.25822 -12.15307 -11.96644 -11.68765 -11.53834 -11.08196 -10.95990 -10.75356 -10.42639 -10.05298 -9.84881 -9.82407 -9.66609 -9.51327 -9.22327 -9.11775 -8.91083 -8.82220 -6.89669 -5.79756 -3.10369 0.56435 0.82459 1.68006 2.68938 3.04826 3.39262 3.44038 3.45128 3.46329 3.90040 4.14023 4.20237 4.43134 4.50369 4.53448 4.68987 4.84025 4.92124 5.03496 5.06378 5.09678 5.20059 5.21347 5.25749 5.28760 5.46369 5.57673 5.61004 5.71184 5.77117 6.05306 6.16445 6.30118 6.42873 6.53937 6.56939 7.02447 7.12830 7.48998 7.50149 7.64100 7.94737 8.10460 8.27515 9.02644 9.68686 10.55830 11.38234 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029870 B = 0.001869 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.163814 B =14977.757466 C =15155.731365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.033 4.033 3 C -0.158 4.158 4 C 0.154 3.846 5 C -0.096 4.096 6 C 0.519 3.481 7 O -0.524 6.524 8 N -0.726 5.726 9 C 0.105 3.895 10 C 0.063 3.937 11 O -0.527 6.527 12 C 0.148 3.852 13 N -0.603 5.603 14 C -0.219 4.219 15 H 0.081 0.919 16 C -0.008 4.008 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.135 3.865 23 N -0.443 5.443 24 C 0.126 3.874 25 C -0.098 4.098 26 Cl -0.058 7.058 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.144 0.856 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.398 0.602 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.361 0.639 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.253 0.747 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.064 -12.320 -3.668 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.042 4.042 3 C -0.178 4.178 4 C 0.016 3.984 5 C -0.136 4.136 6 C 0.304 3.696 7 O -0.400 6.400 8 N -0.379 5.379 9 C -0.020 4.020 10 C 0.020 3.980 11 O -0.330 6.330 12 C 0.022 3.978 13 N -0.328 5.328 14 C -0.346 4.346 15 H 0.099 0.901 16 C -0.205 4.205 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.009 3.991 23 N -0.152 5.152 24 C -0.033 4.033 25 C -0.127 4.127 26 Cl -0.029 7.029 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.162 0.838 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.233 0.767 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.207 0.793 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -22.522 -12.755 -2.727 26.026 hybrid contribution -0.311 0.455 -0.836 1.002 sum -22.833 -12.299 -3.563 26.179 Atomic orbital electron populations 1.20893 0.89308 1.03948 1.03524 1.20172 0.97369 0.91211 0.95424 1.21825 0.94180 0.98515 1.03239 1.20675 0.90565 0.93266 0.93863 1.20657 0.98336 0.94667 0.99949 1.20114 0.81067 0.82440 0.85991 1.90742 1.68373 1.34093 1.46742 1.45893 1.40205 1.20578 1.31219 1.22018 0.91987 0.99271 0.88682 1.23781 0.89572 0.82546 1.02086 1.86622 1.48730 1.40839 1.56812 1.22834 0.85525 0.96258 0.93189 1.45655 1.33485 1.52806 1.00880 1.19001 1.02006 1.19409 0.94197 0.90086 1.24810 0.99231 1.01130 0.95306 1.69818 1.39947 1.50181 0.96914 0.86093 0.83310 0.79305 0.77056 1.21622 1.21711 1.20517 1.22559 0.86861 0.96854 0.92857 1.67631 1.39674 0.97374 1.10487 1.22791 0.89232 0.97046 0.94217 1.22036 0.94118 0.87660 1.08896 1.98365 1.78189 1.29465 1.96889 0.89954 0.90461 0.90401 0.83817 0.86385 0.86961 0.76727 0.91278 0.90295 0.79297 0.94615 0.90837 0.93672 0.92733 0.93241 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 9.69 36.01 0.35 -0.31 16 2 C -0.03 -0.28 5.92 -104.29 -0.62 -0.89 16 3 C -0.16 -1.30 9.42 -39.45 -0.37 -1.67 16 4 C 0.15 1.63 5.76 -82.59 -0.48 1.16 16 5 C -0.10 -0.83 6.10 -29.03 -0.18 -1.01 16 6 C 0.52 6.68 7.76 -10.99 -0.09 6.59 16 7 O -0.52 -9.03 15.33 5.56 0.09 -8.94 16 8 N -0.73 -8.81 5.34 -60.29 -0.32 -9.13 16 9 C 0.11 1.58 5.28 -4.04 -0.02 1.56 16 10 C 0.06 1.13 1.52 -89.69 -0.14 0.99 16 11 O -0.53 -9.22 13.51 -35.23 -0.48 -9.70 16 12 C 0.15 3.34 6.83 -2.97 -0.02 3.32 16 13 N -0.60 -15.51 3.70 -177.75 -0.66 -16.17 16 14 C -0.22 -6.20 10.70 -15.06 -0.16 -6.36 16 15 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 17 N -0.92 -27.16 11.51 55.49 0.64 -26.52 16 18 Si 0.91 22.24 29.56 -169.99 -5.02 17.22 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.14 2.79 8.34 -2.97 -0.02 2.77 16 23 N -0.44 -5.67 9.22 -9.44 -0.09 -5.76 16 24 C 0.13 1.36 10.99 -17.50 -0.19 1.17 16 25 C -0.10 -0.92 6.34 -39.35 -0.25 -1.17 16 26 Cl -0.06 -0.47 27.48 -51.86 -1.42 -1.89 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.30 8.10 -51.93 -0.42 -0.12 16 29 H 0.08 0.42 7.02 -51.93 -0.36 0.05 16 30 H 0.14 0.74 7.95 -52.49 -0.42 0.32 16 31 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.11 0.57 7.87 -51.93 -0.41 0.16 16 33 H 0.40 3.82 7.31 -40.82 -0.30 3.53 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 36 H 0.36 4.53 7.61 45.56 0.35 4.88 16 37 H 0.04 0.83 8.03 -51.93 -0.42 0.42 16 38 H 0.07 1.81 7.35 -51.93 -0.38 1.43 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 42 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -36.71 371.25 -8.81 -45.52 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.86 Total: 3.98 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -2.28 Total: 5.80 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.43 Total: -57.58 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.39 Total: -18.64 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.42 Total: -1.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.71 -8.81 -45.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500863434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.302 kcal (2) G-P(sol) polarization free energy of solvation -36.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds