Wall clock time and date at job start Tue Mar 31 2020 22:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38643 * 120.79978 * 2 1 4 4 C 1.38185 * 119.17943 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.60290 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47062 * 125.00509 * 5 4 3 7 7 O 1.21280 * 120.00094 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99966 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99776 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47067 * 179.97438 * 9 8 6 11 11 O 1.42899 * 112.94705 * 53.40977 * 10 9 8 12 12 C 1.53953 * 113.74319 * 281.67537 * 10 9 8 13 13 N 1.47587 * 86.11713 * 222.04657 * 12 10 9 14 14 C 1.36929 * 134.49154 * 204.63772 * 13 12 10 15 15 H 1.07993 * 120.00119 * 173.48281 * 14 13 12 16 16 C 1.38815 * 120.00039 * 353.48536 * 14 13 12 17 17 N 1.31624 * 120.00014 * 5.06674 * 16 14 13 18 18 Si 1.86802 * 120.00245 * 185.06446 * 16 14 13 19 19 H 1.48504 * 109.46955 * 94.98714 * 18 16 14 20 20 H 1.48493 * 109.47192 * 214.98622 * 18 16 14 21 21 H 1.48504 * 109.46698 * 334.98744 * 18 16 14 22 22 C 1.47581 * 91.01520 * 24.64118 * 13 12 10 23 23 N 1.31875 * 120.79715 * 0.02562 * 4 3 2 24 24 C 1.31849 * 121.73767 * 0.02562 * 23 4 3 25 25 C 1.38349 * 120.74209 * 359.97438 * 24 23 4 26 26 Cl 1.73605 * 120.43290 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.47038 * 270.02539 * 1 2 3 28 28 H 1.08998 * 109.46616 * 30.01980 * 1 2 3 29 29 H 1.08994 * 109.47218 * 150.02113 * 1 2 3 30 30 H 1.08001 * 120.40813 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47381 * 245.00556 * 5 4 3 32 32 H 1.09002 * 109.47335 * 5.00670 * 5 4 3 33 33 H 0.96997 * 120.00304 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.47418 * 300.00089 * 9 8 6 35 35 H 1.09007 * 109.47443 * 59.99935 * 9 8 6 36 36 H 0.96703 * 113.99760 * 309.67199 * 11 10 9 37 37 H 1.08995 * 113.76444 * 336.34807 * 12 10 9 38 38 H 1.08999 * 113.76691 * 107.74477 * 12 10 9 39 39 H 0.97000 * 119.99818 * 180.02562 * 17 16 14 40 40 H 1.08998 * 113.76903 * 221.06277 * 22 13 12 41 41 H 1.09004 * 113.87328 * 89.67271 * 22 13 12 42 42 H 1.07999 * 119.62895 * 180.27819 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1909 0.0000 4 6 3.5982 1.1518 0.0005 5 6 4.3794 2.4406 0.0011 6 6 5.3364 2.4474 1.1653 7 8 5.3794 1.4993 1.9205 8 7 6.1436 3.5075 1.3679 9 6 7.0734 3.5143 2.4999 10 6 7.8666 4.8226 2.5005 11 8 7.0307 5.9810 2.4634 12 6 9.0155 4.8514 1.4761 13 7 9.8143 5.4900 2.5402 14 6 10.9074 6.3146 2.5556 15 1 11.2509 6.7385 3.4876 16 6 11.5740 6.6057 1.3733 17 7 11.0984 6.1714 0.2255 18 14 13.1461 7.6139 1.4113 19 1 14.3183 6.7024 1.4334 20 1 13.2113 8.4749 0.2031 21 1 13.1585 8.4659 2.6275 22 6 8.9619 4.8830 3.5807 23 7 4.2411 0.0004 0.0005 24 6 3.6002 -1.1518 -0.0005 25 6 2.2173 -1.1918 -0.0010 26 17 1.3816 -2.7135 -0.0017 27 1 -0.3633 0.0005 1.0276 28 1 -0.3632 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 1.6968 2.1374 0.0004 31 1 4.9395 2.5264 -0.9300 32 1 3.6923 3.2820 0.0907 33 1 6.1090 4.2659 0.7642 34 1 6.5131 3.4283 3.4309 35 1 7.7609 2.6730 2.4106 36 1 6.3600 5.9598 1.7671 37 1 9.3745 3.8625 1.1908 38 1 8.8252 5.4994 0.6206 39 1 11.5644 6.3745 -0.6006 40 1 8.7287 5.5563 4.4055 41 1 9.3038 3.9034 3.9150 42 1 4.1610 -2.0748 0.0041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500863434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:34 Heat of formation + Delta-G solvation = -26.373037 kcal Electronic energy + Delta-G solvation = -26085.281981 eV Core-core repulsion = 22092.104645 eV Total energy + Delta-G solvation = -3993.177336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64489 -40.91227 -39.86425 -37.68219 -36.47385 -35.21541 -34.93034 -34.03780 -33.74730 -30.58249 -29.22196 -28.79038 -27.30213 -26.71016 -24.35614 -23.86386 -22.62576 -21.34269 -20.91204 -19.00759 -18.52359 -17.92985 -17.65861 -17.42607 -17.21108 -16.56644 -16.28418 -16.19923 -15.83568 -15.57127 -15.29624 -14.88960 -14.71706 -14.45987 -14.32893 -13.92242 -13.84179 -13.70105 -13.60151 -13.47573 -13.13691 -12.95800 -12.86336 -12.74120 -12.54951 -12.53017 -12.20192 -12.17610 -11.77370 -11.41797 -10.95976 -10.91864 -10.70932 -10.49699 -10.41219 -10.08654 -9.81615 -8.92962 -7.93281 -5.24895 -0.12595 0.17440 1.01306 1.45124 1.47060 1.55895 1.71902 2.11030 2.46144 2.68461 3.07493 3.22853 3.25941 3.36908 3.53758 3.60295 3.62358 3.89520 3.93136 3.98978 4.20836 4.37942 4.42657 4.50322 4.63538 4.66781 4.69660 4.74746 4.79160 4.80316 4.89411 4.97329 5.12752 5.17742 5.18518 5.31364 5.38550 5.50130 5.54032 5.91352 6.54192 6.87787 6.91315 6.93562 7.30443 7.58190 8.52686 9.24175 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029870 B = 0.001869 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.163814 B =14977.757466 C =15155.731365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.038 4.038 3 C -0.150 4.150 4 C 0.131 3.869 5 C -0.088 4.088 6 C 0.517 3.483 7 O -0.572 6.572 8 N -0.717 5.717 9 C 0.121 3.879 10 C 0.102 3.898 11 O -0.539 6.539 12 C 0.148 3.852 13 N -0.636 5.636 14 C -0.234 4.234 15 H 0.081 0.919 16 C -0.066 4.066 17 N -0.950 5.950 18 Si 0.978 3.022 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.268 1.268 22 C 0.127 3.873 23 N -0.484 5.484 24 C 0.104 3.896 25 C -0.104 4.104 26 Cl -0.051 7.051 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.181 0.819 31 H 0.133 0.867 32 H 0.158 0.842 33 H 0.413 0.587 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.385 0.615 37 H 0.024 0.976 38 H 0.048 0.952 39 H 0.249 0.751 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.202 -11.364 -3.690 28.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.047 4.047 3 C -0.169 4.169 4 C -0.007 4.007 5 C -0.127 4.127 6 C 0.305 3.695 7 O -0.450 6.450 8 N -0.371 5.371 9 C -0.004 4.004 10 C 0.059 3.941 11 O -0.345 6.345 12 C 0.022 3.978 13 N -0.363 5.363 14 C -0.362 4.362 15 H 0.099 0.901 16 C -0.259 4.259 17 N -0.599 5.599 18 Si 0.806 3.194 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.193 1.193 22 C 0.002 3.998 23 N -0.193 5.193 24 C -0.054 4.054 25 C -0.133 4.133 26 Cl -0.022 7.022 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.198 0.802 31 H 0.151 0.849 32 H 0.175 0.825 33 H 0.250 0.750 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.234 0.766 37 H 0.041 0.959 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -24.701 -11.792 -2.754 27.510 hybrid contribution 0.284 0.122 -0.799 0.857 sum -24.418 -11.669 -3.553 27.295 Atomic orbital electron populations 1.20968 0.87181 1.05059 1.04235 1.20592 0.98902 0.90802 0.94363 1.22194 0.93324 0.99989 1.01415 1.21085 0.91920 0.93173 0.94499 1.20774 0.98184 0.95536 0.98244 1.20851 0.80973 0.81324 0.86395 1.90728 1.69796 1.35751 1.48730 1.45774 1.39432 1.21297 1.30627 1.21625 0.92003 0.96552 0.90253 1.23087 0.88785 0.84093 0.98155 1.86573 1.49250 1.40699 1.58008 1.22771 0.87472 0.94631 0.92948 1.46052 1.33518 1.53145 1.03540 1.19367 1.02851 1.19718 0.94298 0.90087 1.25638 1.02329 1.02908 0.95074 1.69985 1.41045 1.51697 0.97185 0.85061 0.79307 0.77821 0.77170 1.21519 1.21845 1.19295 1.22796 0.86928 0.97266 0.92858 1.67568 1.41270 0.98560 1.11941 1.22892 0.90188 0.96972 0.95333 1.22120 0.93838 0.88595 1.08794 1.98361 1.77847 1.29156 1.96854 0.89263 0.88255 0.90452 0.80164 0.84926 0.82463 0.75035 0.90518 0.91719 0.76570 0.95872 0.93364 0.94174 0.92386 0.91481 0.81741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.69 71.24 0.69 -0.28 16 2 C -0.04 -0.56 5.92 -19.65 -0.12 -0.67 16 3 C -0.15 -2.04 9.42 22.35 0.21 -1.83 16 4 C 0.13 2.56 5.76 42.54 0.25 2.80 16 5 C -0.09 -1.28 6.10 29.10 0.18 -1.11 16 6 C 0.52 12.48 7.76 87.66 0.68 13.16 16 7 O -0.57 -19.48 15.33 -3.03 -0.05 -19.53 16 8 N -0.72 -16.07 5.34 -463.06 -2.47 -18.54 16 9 C 0.12 3.49 5.28 86.38 0.46 3.95 16 10 C 0.10 3.55 1.52 -10.13 -0.02 3.53 16 11 O -0.54 -17.83 13.51 -148.98 -2.01 -19.84 16 12 C 0.15 6.74 6.83 86.48 0.59 7.33 16 13 N -0.64 -33.02 3.70 -720.10 -2.66 -35.68 16 14 C -0.23 -13.40 10.70 84.04 0.90 -12.50 16 15 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 16 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 17 N -0.95 -57.04 11.51 21.65 0.25 -56.79 16 18 Si 0.98 46.11 29.56 68.60 2.03 48.13 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 C 0.13 5.16 8.34 86.48 0.72 5.88 16 23 N -0.48 -12.42 9.22 -183.79 -1.69 -14.12 16 24 C 0.10 2.32 10.99 84.72 0.93 3.25 16 25 C -0.10 -1.90 6.34 22.42 0.14 -1.76 16 26 Cl -0.05 -0.79 27.48 -2.72 -0.07 -0.87 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.10 0.39 8.10 -2.39 -0.02 0.37 16 29 H 0.08 0.66 7.02 -2.39 -0.02 0.64 16 30 H 0.18 0.99 7.95 -2.91 -0.02 0.96 16 31 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.16 0.82 7.87 -2.39 -0.02 0.80 16 33 H 0.41 6.89 7.31 -92.71 -0.68 6.21 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 2.09 8.04 -2.38 -0.02 2.07 16 36 H 0.38 8.61 7.61 -74.06 -0.56 8.04 16 37 H 0.02 1.12 8.03 -2.39 -0.02 1.10 16 38 H 0.05 2.43 7.35 -2.39 -0.02 2.41 16 39 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.07 2.51 8.10 -2.39 -0.02 2.49 16 42 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -81.93 371.25 -0.77 -82.70 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -0.17 Total: 16.11 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 6.08 Total: 18.41 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -6.58 Total: -125.12 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -2.06 Total: -39.37 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.07 Total: -0.87 kcal Total: -81.93 -0.77 -82.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500863434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.332 kcal (2) G-P(sol) polarization free energy of solvation -81.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds