Wall clock time and date at job start Tue Mar 31 2020 22:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00148 * 2 1 4 4 H 1.48502 * 109.47074 * 269.99976 * 3 2 1 5 5 H 1.48507 * 109.47378 * 29.99984 * 3 2 1 6 6 H 1.48497 * 109.47190 * 150.00042 * 3 2 1 7 7 C 1.38807 * 119.99488 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99861 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00678 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99991 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46879 * 175.02927 * 10 9 7 12 12 N 1.46504 * 109.54335 * 305.58397 * 11 10 9 13 13 C 1.34772 * 119.99978 * 304.11155 * 12 11 10 14 14 O 1.21518 * 119.99988 * 354.69104 * 13 12 11 15 15 C 1.48109 * 120.00186 * 174.69332 * 13 12 11 16 16 C 1.39345 * 119.71146 * 180.25103 * 15 13 12 17 17 C 1.38522 * 119.08062 * 180.25023 * 16 15 13 18 18 C 1.38775 * 118.47514 * 359.50700 * 17 16 15 19 19 Cl 1.73606 * 120.33660 * 180.27613 * 18 17 16 20 20 C 1.38721 * 119.32418 * 0.24872 * 18 17 16 21 21 N 1.31491 * 120.87956 * 0.02562 * 20 18 17 22 22 C 1.53184 * 109.54451 * 65.75869 * 11 10 9 23 23 C 1.53278 * 109.06389 * 176.85131 * 22 11 10 24 24 O 1.42898 * 109.46360 * 302.44923 * 23 22 11 25 25 C 1.42907 * 114.09733 * 61.15942 * 24 23 22 26 26 C 1.53091 * 109.41283 * 298.83759 * 25 24 23 27 27 H 0.97001 * 119.99750 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99753 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47367 * 55.03472 * 10 9 7 30 30 H 1.08993 * 109.47531 * 295.02435 * 10 9 7 31 31 H 0.97005 * 119.99834 * 124.10608 * 12 11 10 32 32 H 1.08000 * 120.46327 * 0.02562 * 16 15 13 33 33 H 1.08006 * 120.76434 * 179.77664 * 17 16 15 34 34 H 1.08000 * 119.55596 * 180.02562 * 20 18 17 35 35 H 1.08996 * 109.52027 * 296.84598 * 22 11 10 36 36 H 1.09003 * 109.51516 * 57.03426 * 22 11 10 37 37 H 1.08998 * 109.45974 * 182.44570 * 23 22 11 38 38 H 1.09010 * 109.46423 * 62.45083 * 23 22 11 39 39 H 1.08999 * 109.47714 * 178.86321 * 25 24 23 40 40 H 1.08995 * 109.49659 * 58.83157 * 25 24 23 41 41 H 1.09000 * 109.52828 * 297.70695 * 26 25 24 42 42 H 1.09006 * 109.57525 * 177.54447 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0685 -4.8170 0.1279 12 7 0.2270 -4.6168 1.3103 13 6 0.7947 -4.4530 2.5215 14 8 1.9978 -4.5671 2.6491 15 6 -0.0477 -4.1339 3.6972 16 6 0.5462 -3.9605 4.9458 17 6 -0.2546 -3.6676 6.0374 18 6 -1.6231 -3.5475 5.8409 19 17 -2.6709 -3.1744 7.1738 20 6 -2.1451 -3.7281 4.5684 21 7 -1.3613 -4.0110 3.5513 22 6 0.1875 -4.8776 -1.1238 23 6 -0.7452 -6.0896 -1.0212 24 8 0.0334 -7.2778 -0.8658 25 6 0.8417 -7.2957 0.3125 26 6 1.8381 -6.1344 0.2637 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3881 0.0016 29 1 2.7504 -3.6766 0.8432 30 1 2.6154 -3.7545 -0.9299 31 1 -0.7389 -4.6022 1.2213 32 1 1.6157 -4.0569 5.0615 33 1 0.1767 -3.5313 7.0182 34 1 -3.2095 -3.6351 4.4111 35 1 -0.4041 -3.9651 -1.1973 36 1 0.8173 -4.9768 -2.0079 37 1 -1.3449 -6.1641 -1.9283 38 1 -1.4024 -5.9704 -0.1597 39 1 1.3853 -8.2389 0.3660 40 1 0.2057 -7.1923 1.1916 41 1 2.5011 -6.2589 -0.5925 42 1 2.4267 -6.1194 1.1811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502642339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:27 Heat of formation + Delta-G solvation = -33.659804 kcal Electronic energy + Delta-G solvation = -28074.419443 eV Core-core repulsion = 24080.926129 eV Total energy + Delta-G solvation = -3993.493314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.88968 -39.96870 -38.16117 -36.88150 -35.75324 -33.71747 -32.85917 -31.91382 -31.05146 -30.83220 -30.33774 -26.56682 -24.81380 -23.88337 -23.73293 -23.29411 -21.54127 -21.13030 -19.03661 -18.29137 -17.23148 -16.99830 -16.68189 -15.93787 -15.87217 -15.38052 -15.11587 -15.08691 -14.58058 -14.32451 -14.13864 -13.98778 -13.51394 -13.45596 -13.11884 -12.77166 -12.67487 -12.40905 -12.36837 -12.14441 -11.79293 -11.56148 -11.53118 -11.16959 -10.90090 -10.81441 -10.54675 -10.35831 -10.10120 -10.08448 -10.00982 -9.69934 -9.55219 -9.35072 -9.15168 -8.80529 -8.58241 -6.85925 -5.73664 -3.00475 0.38913 0.95547 1.71554 2.78737 3.26055 3.44726 3.50155 3.51776 3.81944 3.97233 4.07928 4.44492 4.58411 4.60490 4.73033 4.84419 4.99476 5.01472 5.10933 5.15027 5.31763 5.46919 5.48627 5.60894 5.61726 5.68671 5.76791 5.80594 5.94768 6.05515 6.10752 6.20357 6.25478 6.30140 6.46637 6.53883 6.83180 7.02342 7.27853 7.45653 7.74126 7.85752 8.45244 8.46255 9.56851 10.14067 10.49835 11.49167 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.007256 B = 0.004957 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3857.862460 B = 5647.019962 C = 8390.741784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.231 4.231 8 H 0.068 0.932 9 N -0.725 5.725 10 C 0.141 3.859 11 C 0.172 3.828 12 N -0.690 5.690 13 C 0.582 3.418 14 O -0.523 6.523 15 C 0.096 3.904 16 C -0.100 4.100 17 C -0.073 4.073 18 C -0.076 4.076 19 Cl -0.053 7.053 20 C 0.115 3.885 21 N -0.438 5.438 22 C -0.154 4.154 23 C 0.060 3.940 24 O -0.385 6.385 25 C 0.066 3.934 26 C -0.163 4.163 27 H 0.253 0.747 28 H 0.382 0.618 29 H 0.049 0.951 30 H 0.022 0.978 31 H 0.406 0.594 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.170 0.830 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.079 0.921 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.078 -13.857 9.544 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.369 5.369 10 C 0.013 3.987 11 C 0.086 3.914 12 N -0.341 5.341 13 C 0.366 3.634 14 O -0.399 6.399 15 C -0.043 4.043 16 C -0.121 4.121 17 C -0.099 4.099 18 C -0.105 4.105 19 Cl -0.025 7.025 20 C -0.045 4.045 21 N -0.150 5.150 22 C -0.192 4.192 23 C -0.017 4.017 24 O -0.304 6.304 25 C -0.011 4.011 26 C -0.202 4.202 27 H 0.063 0.937 28 H 0.216 0.784 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.242 0.758 32 H 0.175 0.825 33 H 0.169 0.831 34 H 0.188 0.812 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.490 -14.043 8.738 17.138 hybrid contribution -0.115 1.700 1.178 2.072 sum -4.605 -12.342 9.915 16.488 Atomic orbital electron populations 1.69654 1.04990 1.25406 1.58277 1.24678 0.95495 0.97470 1.03361 0.86224 0.78697 0.84044 0.77482 1.21776 1.21906 1.20856 1.19213 0.90995 0.84133 1.41926 0.91365 1.42222 1.05637 0.99664 1.89413 1.21087 0.93473 0.84962 0.99162 1.20673 0.91419 0.95496 0.83786 1.45750 1.10627 1.71667 1.06070 1.17520 0.86629 0.76905 0.82325 1.90721 1.13653 1.50662 1.84831 1.21470 0.90256 0.98210 0.94330 1.22145 1.02483 0.96345 0.91152 1.21540 0.91247 0.96654 1.00467 1.22321 0.92617 1.04468 0.91061 1.98388 1.65908 1.92645 1.45526 1.22799 1.00664 0.95125 0.85929 1.67720 1.04667 1.10161 1.32432 1.22472 0.99530 0.99550 0.97690 1.22651 0.92810 0.84641 1.01592 1.87892 1.59427 1.39189 1.43895 1.22509 0.92492 0.98610 0.87507 1.22565 0.99011 0.93951 1.04706 0.93713 0.78373 0.93269 0.95991 0.75808 0.82455 0.83146 0.81250 0.89051 0.89380 0.88718 0.93367 0.89242 0.93520 0.90203 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.90 22.84 29.55 -169.99 -5.02 17.82 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.72 -18.21 5.21 -59.91 -0.31 -18.53 16 10 C 0.14 2.95 4.80 -4.04 -0.02 2.93 16 11 C 0.17 2.81 0.32 -131.63 -0.04 2.77 16 12 N -0.69 -11.17 3.74 -48.28 -0.18 -11.35 16 13 C 0.58 10.13 7.22 -12.21 -0.09 10.04 16 14 O -0.52 -10.07 12.63 5.35 0.07 -10.00 16 15 C 0.10 1.49 6.75 -83.01 -0.56 0.93 16 16 C -0.10 -1.32 9.63 -39.06 -0.38 -1.70 16 17 C -0.07 -0.79 9.97 -39.28 -0.39 -1.18 16 18 C -0.08 -0.83 6.35 -39.20 -0.25 -1.08 16 19 Cl -0.05 -0.51 28.99 -51.86 -1.50 -2.01 16 20 C 0.12 1.38 10.98 -17.52 -0.19 1.19 16 21 N -0.44 -6.36 9.55 -9.77 -0.09 -6.45 16 22 C -0.15 -2.29 4.84 -26.49 -0.13 -2.42 16 23 C 0.06 0.75 6.67 37.30 0.25 1.00 16 24 O -0.39 -5.26 10.77 -35.23 -0.38 -5.64 16 25 C 0.07 0.83 6.68 37.20 0.25 1.08 16 26 C -0.16 -2.34 4.82 -26.59 -0.13 -2.47 16 27 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.38 9.93 6.51 -40.82 -0.27 9.67 16 29 H 0.05 1.13 6.25 -51.93 -0.32 0.81 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.41 6.16 6.74 -40.82 -0.28 5.89 16 32 H 0.16 1.96 7.64 -52.49 -0.40 1.55 16 33 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.09 1.51 7.22 -51.93 -0.37 1.13 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.57 7.01 -51.92 -0.36 0.21 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.59 7.75 -51.93 -0.40 0.19 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.09 1.45 6.26 -51.93 -0.32 1.13 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -32.52 357.66 -8.47 -40.99 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -5.24 Total: 13.35 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.92 Total: 3.85 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 0.14 Total: -63.75 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.31 Total: -15.64 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.52 -8.47 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502642339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.329 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds