Wall clock time and date at job start Tue Mar 31 2020 22:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00148 * 2 1 4 4 H 1.48502 * 109.47074 * 269.99976 * 3 2 1 5 5 H 1.48507 * 109.47378 * 29.99984 * 3 2 1 6 6 H 1.48497 * 109.47190 * 150.00042 * 3 2 1 7 7 C 1.38807 * 119.99488 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99861 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00678 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99991 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46879 * 175.02927 * 10 9 7 12 12 N 1.46504 * 109.54335 * 305.58397 * 11 10 9 13 13 C 1.34772 * 119.99978 * 304.11155 * 12 11 10 14 14 O 1.21518 * 119.99988 * 354.69104 * 13 12 11 15 15 C 1.48109 * 120.00186 * 174.69332 * 13 12 11 16 16 C 1.39345 * 119.71146 * 180.25103 * 15 13 12 17 17 C 1.38522 * 119.08062 * 180.25023 * 16 15 13 18 18 C 1.38775 * 118.47514 * 359.50700 * 17 16 15 19 19 Cl 1.73606 * 120.33660 * 180.27613 * 18 17 16 20 20 C 1.38721 * 119.32418 * 0.24872 * 18 17 16 21 21 N 1.31491 * 120.87956 * 0.02562 * 20 18 17 22 22 C 1.53184 * 109.54451 * 65.75869 * 11 10 9 23 23 C 1.53278 * 109.06389 * 176.85131 * 22 11 10 24 24 O 1.42898 * 109.46360 * 302.44923 * 23 22 11 25 25 C 1.42907 * 114.09733 * 61.15942 * 24 23 22 26 26 C 1.53091 * 109.41283 * 298.83759 * 25 24 23 27 27 H 0.97001 * 119.99750 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99753 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47367 * 55.03472 * 10 9 7 30 30 H 1.08993 * 109.47531 * 295.02435 * 10 9 7 31 31 H 0.97005 * 119.99834 * 124.10608 * 12 11 10 32 32 H 1.08000 * 120.46327 * 0.02562 * 16 15 13 33 33 H 1.08006 * 120.76434 * 179.77664 * 17 16 15 34 34 H 1.08000 * 119.55596 * 180.02562 * 20 18 17 35 35 H 1.08996 * 109.52027 * 296.84598 * 22 11 10 36 36 H 1.09003 * 109.51516 * 57.03426 * 22 11 10 37 37 H 1.08998 * 109.45974 * 182.44570 * 23 22 11 38 38 H 1.09010 * 109.46423 * 62.45083 * 23 22 11 39 39 H 1.08999 * 109.47714 * 178.86321 * 25 24 23 40 40 H 1.08995 * 109.49659 * 58.83157 * 25 24 23 41 41 H 1.09000 * 109.52828 * 297.70695 * 26 25 24 42 42 H 1.09006 * 109.57525 * 177.54447 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0685 -4.8170 0.1279 12 7 0.2270 -4.6168 1.3103 13 6 0.7947 -4.4530 2.5215 14 8 1.9978 -4.5671 2.6491 15 6 -0.0477 -4.1339 3.6972 16 6 0.5462 -3.9605 4.9458 17 6 -0.2546 -3.6676 6.0374 18 6 -1.6231 -3.5475 5.8409 19 17 -2.6709 -3.1744 7.1738 20 6 -2.1451 -3.7281 4.5684 21 7 -1.3613 -4.0110 3.5513 22 6 0.1875 -4.8776 -1.1238 23 6 -0.7452 -6.0896 -1.0212 24 8 0.0334 -7.2778 -0.8658 25 6 0.8417 -7.2957 0.3125 26 6 1.8381 -6.1344 0.2637 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3881 0.0016 29 1 2.7504 -3.6766 0.8432 30 1 2.6154 -3.7545 -0.9299 31 1 -0.7389 -4.6022 1.2213 32 1 1.6157 -4.0569 5.0615 33 1 0.1767 -3.5313 7.0182 34 1 -3.2095 -3.6351 4.4111 35 1 -0.4041 -3.9651 -1.1973 36 1 0.8173 -4.9768 -2.0079 37 1 -1.3449 -6.1641 -1.9283 38 1 -1.4024 -5.9704 -0.1597 39 1 1.3853 -8.2389 0.3660 40 1 0.2057 -7.1923 1.1916 41 1 2.5011 -6.2589 -0.5925 42 1 2.4267 -6.1194 1.1811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502642339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:26 Heat of formation + Delta-G solvation = -56.059119 kcal Electronic energy + Delta-G solvation = -28075.390750 eV Core-core repulsion = 24080.926129 eV Total energy + Delta-G solvation = -3994.464621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.07754 -41.06467 -39.35534 -37.74630 -37.23107 -35.51544 -33.96549 -33.18932 -32.49217 -32.06865 -31.74462 -28.21584 -26.01991 -25.34856 -24.86376 -24.55736 -23.09192 -22.30748 -20.36378 -19.44903 -19.27166 -18.01322 -17.68723 -17.09403 -16.99165 -16.84511 -16.37770 -16.25254 -16.22257 -15.62925 -15.38212 -15.24877 -15.02035 -14.83772 -14.43226 -14.21822 -13.87743 -13.68256 -13.60772 -13.24510 -13.11326 -12.99802 -12.82138 -12.78424 -12.39567 -12.31495 -12.13581 -11.97251 -11.72956 -11.46363 -11.15115 -11.04798 -10.95012 -10.68170 -10.52833 -10.16264 -9.89697 -8.96707 -7.95852 -5.22510 -0.64538 0.01743 0.83511 1.43275 1.44292 1.52697 1.59884 2.04677 2.53482 2.68626 2.94238 3.02746 3.37052 3.53475 3.58132 3.64880 3.75250 3.79501 3.85164 3.94786 4.00141 4.23992 4.27357 4.44279 4.55873 4.59491 4.69229 4.73926 4.78725 4.79539 4.85389 4.87220 5.05295 5.09769 5.14311 5.19134 5.24912 5.45859 5.58121 6.23004 6.25833 6.35584 6.63761 7.15886 7.33577 8.07468 8.35047 9.26798 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.007256 B = 0.004957 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3857.862460 B = 5647.019962 C = 8390.741784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.068 4.068 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.064 0.936 9 N -0.729 5.729 10 C 0.143 3.857 11 C 0.176 3.824 12 N -0.685 5.685 13 C 0.574 3.426 14 O -0.551 6.551 15 C 0.065 3.935 16 C -0.106 4.106 17 C -0.064 4.064 18 C -0.070 4.070 19 Cl -0.033 7.033 20 C 0.109 3.891 21 N -0.456 5.456 22 C -0.148 4.148 23 C 0.065 3.935 24 O -0.390 6.390 25 C 0.071 3.929 26 C -0.156 4.156 27 H 0.250 0.750 28 H 0.376 0.624 29 H 0.028 0.972 30 H 0.022 0.978 31 H 0.410 0.590 32 H 0.159 0.841 33 H 0.183 0.817 34 H 0.194 0.806 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.056 0.944 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 -14.412 10.481 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.374 4.374 8 H 0.082 0.918 9 N -0.372 5.372 10 C 0.015 3.985 11 C 0.090 3.910 12 N -0.336 5.336 13 C 0.360 3.640 14 O -0.430 6.430 15 C -0.072 4.072 16 C -0.127 4.127 17 C -0.090 4.090 18 C -0.099 4.099 19 Cl -0.004 7.004 20 C -0.052 4.052 21 N -0.167 5.167 22 C -0.186 4.186 23 C -0.011 4.011 24 O -0.308 6.308 25 C -0.006 4.006 26 C -0.195 4.195 27 H 0.059 0.941 28 H 0.210 0.790 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.247 0.753 32 H 0.176 0.824 33 H 0.200 0.800 34 H 0.211 0.789 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.135 0.865 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.233 -14.628 9.666 18.298 hybrid contribution 0.090 1.875 0.978 2.117 sum -5.143 -12.753 10.645 17.390 Atomic orbital electron populations 1.69795 1.06197 1.25815 1.59472 1.25405 0.96369 1.00478 1.03785 0.85245 0.77609 0.80027 0.77528 1.21155 1.22042 1.20191 1.19515 0.91109 0.85585 1.41193 0.91760 1.42279 1.05414 1.00330 1.89175 1.21131 0.94160 0.85177 0.97982 1.20581 0.91087 0.94570 0.84762 1.45716 1.10766 1.71304 1.05796 1.17941 0.86668 0.76302 0.83117 1.90690 1.14822 1.52031 1.85415 1.21316 0.90807 1.00771 0.94342 1.22247 1.02896 0.96445 0.91127 1.21856 0.91032 0.95067 1.01035 1.22408 0.93024 1.03091 0.91384 1.98401 1.65275 1.92338 1.44354 1.23243 1.01528 0.94482 0.85934 1.67650 1.04411 1.10942 1.33722 1.22402 0.99463 1.00036 0.96715 1.22692 0.92208 0.83149 1.03087 1.87898 1.59509 1.39274 1.44167 1.22541 0.92060 0.98669 0.87308 1.22494 0.99231 0.93487 1.04281 0.94099 0.79047 0.95422 0.95994 0.75288 0.82359 0.80004 0.78896 0.90948 0.89379 0.86548 0.92562 0.86950 0.93508 0.89645 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.69 13.06 21.65 0.28 -58.41 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 4 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.24 -13.99 9.99 84.03 0.84 -13.15 16 8 H 0.06 3.69 7.83 -2.91 -0.02 3.66 16 9 N -0.73 -37.63 5.21 -343.46 -1.79 -39.42 16 10 C 0.14 6.16 4.80 86.38 0.41 6.57 16 11 C 0.18 5.83 0.32 3.73 0.00 5.84 16 12 N -0.69 -22.67 3.74 -424.96 -1.59 -24.26 16 13 C 0.57 20.61 7.22 86.87 0.63 21.24 16 14 O -0.55 -22.12 12.63 -3.77 -0.05 -22.16 16 15 C 0.06 2.04 6.75 41.90 0.28 2.32 16 16 C -0.11 -2.78 9.63 22.60 0.22 -2.56 16 17 C -0.06 -1.28 9.97 22.47 0.22 -1.05 16 18 C -0.07 -1.41 6.35 22.51 0.14 -1.27 16 19 Cl -0.03 -0.54 28.99 -2.72 -0.08 -0.62 16 20 C 0.11 2.48 10.98 84.86 0.93 3.41 16 21 N -0.46 -13.14 9.55 -184.82 -1.76 -14.91 16 22 C -0.15 -4.37 4.84 30.75 0.15 -4.22 16 23 C 0.07 1.54 6.67 72.08 0.48 2.02 16 24 O -0.39 -9.85 10.77 -148.98 -1.60 -11.45 16 25 C 0.07 1.69 6.68 72.01 0.48 2.17 16 26 C -0.16 -4.44 4.82 30.68 0.15 -4.29 16 27 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 28 H 0.38 20.15 6.51 -92.71 -0.60 19.54 16 29 H 0.03 1.33 6.25 -2.39 -0.01 1.31 16 30 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.41 12.67 6.74 -92.70 -0.63 12.04 16 32 H 0.16 4.00 7.64 -2.91 -0.02 3.98 16 33 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.19 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.07 2.43 7.22 -2.39 -0.02 2.41 16 36 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.06 1.25 7.01 -2.38 -0.02 1.24 16 39 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.05 1.13 7.75 -2.39 -0.02 1.11 16 41 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.08 2.56 6.26 -2.38 -0.01 2.55 16 Total: -1.00 -70.25 357.66 0.69 -69.56 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.15 Total: 38.80 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 5.41 Total: 13.55 kcal Atomic # 7 Polarization: -132.13 SS G_CDS: -4.86 Total: -136.99 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -1.65 Total: -33.62 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -70.25 0.69 -69.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502642339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.500 kcal (2) G-P(sol) polarization free energy of solvation -70.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds