Wall clock time and date at job start Tue Mar 31 2020 22:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48497 * 109.47484 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46825 * 299.99581 * 3 2 1 6 6 H 1.48497 * 109.47325 * 59.99183 * 3 2 1 7 7 C 1.38814 * 120.00387 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99871 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99559 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99973 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.46149 * 299.97499 * 11 10 9 13 13 C 1.53041 * 109.46028 * 180.02562 * 11 10 9 14 14 C 1.53194 * 109.31193 * 178.61637 * 13 11 10 15 15 N 1.46922 * 108.77375 * 54.63582 * 14 13 11 16 16 C 1.34777 * 120.62839 * 126.37157 * 15 14 13 17 17 O 1.21559 * 119.99893 * 176.19101 * 16 15 14 18 18 C 1.47844 * 120.00176 * 356.46282 * 16 15 14 19 19 C 1.39567 * 120.55100 * 50.16482 * 18 16 15 20 20 N 1.31659 * 120.59580 * 179.75152 * 19 18 16 21 21 C 1.31949 * 121.88885 * 0.53767 * 20 19 18 22 22 C 1.38422 * 121.06522 * 359.72836 * 21 20 19 23 23 Cl 1.73601 * 120.35987 * 179.97438 * 22 21 20 24 24 C 1.38511 * 119.28038 * 359.97438 * 22 21 20 25 25 C 1.46929 * 118.74054 * 306.64213 * 15 14 13 26 26 C 1.52754 * 109.00860 * 53.30920 * 25 15 14 27 27 H 0.96994 * 120.00592 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00430 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46803 * 59.99554 * 10 9 7 30 30 H 1.09002 * 109.46743 * 300.00282 * 10 9 7 31 31 H 0.96703 * 113.99492 * 60.02231 * 12 11 10 32 32 H 1.09000 * 109.49547 * 58.66520 * 13 11 10 33 33 H 1.08997 * 109.49759 * 298.56886 * 13 11 10 34 34 H 1.08999 * 109.58241 * 294.84998 * 14 13 11 35 35 H 1.08997 * 109.58406 * 174.42363 * 14 13 11 36 36 H 1.07997 * 119.70031 * 0.02562 * 19 18 16 37 37 H 1.08001 * 119.46410 * 179.70189 * 21 20 19 38 38 H 1.07998 * 120.86717 * 179.97438 * 24 22 21 39 39 H 1.09000 * 109.58741 * 173.14740 * 25 15 14 40 40 H 1.09001 * 109.58357 * 293.57357 * 25 15 14 41 41 H 1.08994 * 109.56882 * 185.55210 * 26 25 15 42 42 H 1.09007 * 109.35756 * 65.49917 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 8 0.2433 -4.7439 1.1687 13 6 1.8295 -6.1449 0.0018 14 6 0.8314 -7.3065 0.0374 15 7 -0.1110 -7.1546 -1.0795 16 6 -0.3086 -8.1617 -1.9531 17 8 -1.1411 -8.0496 -2.8317 18 6 0.4830 -9.4052 -1.8391 19 6 0.5888 -10.0692 -0.6160 20 7 1.2895 -11.1792 -0.5146 21 6 1.9229 -11.7006 -1.5480 22 6 1.8722 -11.1000 -2.7941 23 17 2.7131 -11.8014 -4.1411 24 6 1.1432 -9.9332 -2.9546 25 6 -0.8294 -5.8817 -1.2295 26 6 0.1831 -4.7381 -1.2476 27 1 -0.4851 0.8399 -0.0004 28 1 0.3557 -2.3881 0.0005 29 1 2.6849 -3.7144 0.8905 30 1 2.6848 -3.7144 -0.8895 31 1 -0.2719 -3.9283 1.2349 32 1 2.4742 -6.1922 0.8795 33 1 2.4369 -6.2146 -0.9005 34 1 0.2856 -7.2905 0.9808 35 1 1.3663 -8.2510 -0.0618 36 1 0.0877 -9.6713 0.2540 37 1 2.4904 -12.6105 -1.4194 38 1 1.0865 -9.4430 -3.9152 39 1 -1.3900 -5.8865 -2.1643 40 1 -1.5134 -5.7473 -0.3915 41 1 -0.3439 -3.7841 -1.2594 42 1 0.8060 -4.8211 -2.1383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502890825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:46 Heat of formation + Delta-G solvation = -34.307865 kcal Electronic energy + Delta-G solvation = -27165.392538 eV Core-core repulsion = 23171.871122 eV Total energy + Delta-G solvation = -3993.521416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30260 -39.90573 -38.48566 -37.14905 -35.73406 -34.05851 -33.16882 -32.33359 -31.82215 -30.97612 -30.32506 -26.97332 -25.20244 -24.44669 -23.79332 -23.07346 -22.02090 -20.59678 -19.49678 -18.04266 -17.65513 -17.49669 -17.14296 -16.43216 -15.81707 -15.46054 -15.31727 -15.01811 -14.62296 -14.38635 -14.26768 -13.94801 -13.78125 -13.59193 -13.31930 -13.16358 -12.91579 -12.63385 -12.60576 -12.27610 -11.95055 -11.74357 -11.63024 -11.26443 -11.08289 -11.06937 -10.89674 -10.67320 -10.42279 -10.33886 -10.15027 -9.89272 -9.75412 -9.50049 -9.41455 -8.99590 -8.73506 -7.05946 -5.87970 -3.17316 0.14434 0.48537 1.44350 2.34884 2.69466 3.11314 3.37474 3.43694 3.45547 3.77754 4.02278 4.12795 4.22745 4.43817 4.48485 4.60719 4.66184 4.76690 4.86877 5.04312 5.13644 5.27169 5.30580 5.34641 5.36977 5.46472 5.53250 5.71118 5.76207 5.82457 5.94613 5.94952 5.98131 6.21309 6.29743 6.46311 6.61398 6.62702 7.14289 7.19752 7.61408 7.83874 8.00250 8.30793 9.41703 9.94795 10.28732 11.34816 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021005 B = 0.002353 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.682583 B =11897.881021 C =12160.072373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.729 5.729 10 C 0.129 3.871 11 C 0.130 3.870 12 O -0.561 6.561 13 C -0.117 4.117 14 C 0.103 3.897 15 N -0.594 5.594 16 C 0.562 3.438 17 O -0.531 6.531 18 C -0.160 4.160 19 C 0.134 3.866 20 N -0.466 5.466 21 C 0.129 3.871 22 C -0.093 4.093 23 Cl -0.045 7.045 24 C -0.019 4.019 25 C 0.118 3.882 26 C -0.157 4.157 27 H 0.256 0.744 28 H 0.380 0.620 29 H 0.029 0.971 30 H 0.025 0.975 31 H 0.385 0.615 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.154 0.846 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.728 -24.160 -3.042 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.001 3.999 11 C 0.089 3.911 12 O -0.369 6.369 13 C -0.156 4.156 14 C -0.020 4.020 15 N -0.327 5.327 16 C 0.348 3.652 17 O -0.408 6.408 18 C -0.165 4.165 19 C -0.024 4.024 20 N -0.174 5.174 21 C -0.028 4.028 22 C -0.122 4.122 23 Cl -0.017 7.017 24 C -0.046 4.046 25 C -0.004 4.004 26 C -0.195 4.195 27 H 0.066 0.934 28 H 0.215 0.785 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.234 0.766 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.189 0.811 37 H 0.188 0.812 38 H 0.171 0.829 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.799 -25.025 -2.700 25.325 hybrid contribution 0.080 2.008 -1.085 2.284 sum 2.879 -23.017 -3.785 23.503 Atomic orbital electron populations 1.69631 1.05098 1.25803 1.57627 1.24736 0.95562 0.97765 1.02698 0.86104 0.78797 0.83949 0.77237 1.20557 1.21807 1.21774 1.19231 0.91097 0.83936 1.42940 0.91092 1.42286 1.05536 1.00001 1.89697 1.21307 0.93863 0.86051 0.98679 1.21275 0.90522 0.94614 0.84718 1.86345 1.61569 1.45345 1.43602 1.21849 0.97422 0.92904 1.03426 1.22019 0.91265 0.98953 0.89741 1.48075 1.42764 1.14222 1.27591 1.17965 0.82802 0.82721 0.81693 1.90823 1.34396 1.80820 1.34726 1.20999 1.01740 0.98595 0.95199 1.23236 0.93236 0.89899 0.96009 1.67908 1.07704 1.10813 1.31009 1.23016 0.94791 0.98819 0.86185 1.21979 1.01283 0.97460 0.91515 1.98407 1.76018 1.83212 1.44037 1.21555 0.91228 0.92494 0.99287 1.21588 0.94463 0.80905 1.03429 1.22484 0.98841 0.99128 0.99095 0.93411 0.78511 0.95335 0.95715 0.76589 0.89642 0.90402 0.89501 0.90004 0.81077 0.81216 0.82878 0.89049 0.90420 0.88773 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.90 13.06 55.49 0.72 -26.17 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -16.97 5.07 -59.91 -0.30 -17.27 16 10 C 0.13 2.41 5.40 -4.04 -0.02 2.38 16 11 C 0.13 1.90 0.71 -90.58 -0.06 1.84 16 12 O -0.56 -8.51 11.71 -35.23 -0.41 -8.92 16 13 C -0.12 -1.38 5.11 -26.61 -0.14 -1.51 16 14 C 0.10 1.04 5.13 -3.71 -0.02 1.02 16 15 N -0.59 -7.01 2.98 -174.15 -0.52 -7.53 16 16 C 0.56 7.07 7.26 -12.33 -0.09 6.98 16 17 O -0.53 -8.46 16.48 5.31 0.09 -8.37 16 18 C -0.16 -1.62 5.02 -104.82 -0.53 -2.15 16 19 C 0.13 1.18 8.55 -17.13 -0.15 1.04 16 20 N -0.47 -4.18 10.34 -12.88 -0.13 -4.32 16 21 C 0.13 0.99 10.97 -17.43 -0.19 0.79 16 22 C -0.09 -0.76 6.34 -39.41 -0.25 -1.01 16 23 Cl -0.05 -0.34 28.98 -51.86 -1.50 -1.84 16 24 C -0.02 -0.18 9.70 -38.83 -0.38 -0.55 16 25 C 0.12 1.53 6.16 -3.93 -0.02 1.50 16 26 C -0.16 -2.27 4.91 -26.84 -0.13 -2.40 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.38 9.01 5.58 -40.82 -0.23 8.78 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.38 5.99 7.85 45.56 0.36 6.35 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.87 7.81 -51.93 -0.41 0.47 16 35 H 0.08 0.69 4.54 -51.93 -0.24 0.45 16 36 H 0.17 1.23 7.04 -52.49 -0.37 0.87 16 37 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.09 1.26 7.03 -51.93 -0.36 0.90 16 40 H 0.08 0.98 7.81 -51.93 -0.41 0.58 16 41 H 0.09 1.55 6.82 -51.93 -0.35 1.19 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -31.23 357.70 -8.43 -39.65 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.51 Total: 11.66 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -2.22 Total: 0.92 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.23 Total: -55.29 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.32 Total: -17.30 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.23 -8.43 -39.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502890825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.347 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds