Wall clock time and date at job start Tue Mar 31 2020 22:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48497 * 109.47484 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46825 * 299.99581 * 3 2 1 6 6 H 1.48497 * 109.47325 * 59.99183 * 3 2 1 7 7 C 1.38814 * 120.00387 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99871 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99559 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99973 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.46149 * 299.97499 * 11 10 9 13 13 C 1.53041 * 109.46028 * 180.02562 * 11 10 9 14 14 C 1.53194 * 109.31193 * 178.61637 * 13 11 10 15 15 N 1.46922 * 108.77375 * 54.63582 * 14 13 11 16 16 C 1.34777 * 120.62839 * 126.37157 * 15 14 13 17 17 O 1.21559 * 119.99893 * 176.19101 * 16 15 14 18 18 C 1.47844 * 120.00176 * 356.46282 * 16 15 14 19 19 C 1.39567 * 120.55100 * 50.16482 * 18 16 15 20 20 N 1.31659 * 120.59580 * 179.75152 * 19 18 16 21 21 C 1.31949 * 121.88885 * 0.53767 * 20 19 18 22 22 C 1.38422 * 121.06522 * 359.72836 * 21 20 19 23 23 Cl 1.73601 * 120.35987 * 179.97438 * 22 21 20 24 24 C 1.38511 * 119.28038 * 359.97438 * 22 21 20 25 25 C 1.46929 * 118.74054 * 306.64213 * 15 14 13 26 26 C 1.52754 * 109.00860 * 53.30920 * 25 15 14 27 27 H 0.96994 * 120.00592 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00430 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46803 * 59.99554 * 10 9 7 30 30 H 1.09002 * 109.46743 * 300.00282 * 10 9 7 31 31 H 0.96703 * 113.99492 * 60.02231 * 12 11 10 32 32 H 1.09000 * 109.49547 * 58.66520 * 13 11 10 33 33 H 1.08997 * 109.49759 * 298.56886 * 13 11 10 34 34 H 1.08999 * 109.58241 * 294.84998 * 14 13 11 35 35 H 1.08997 * 109.58406 * 174.42363 * 14 13 11 36 36 H 1.07997 * 119.70031 * 0.02562 * 19 18 16 37 37 H 1.08001 * 119.46410 * 179.70189 * 21 20 19 38 38 H 1.07998 * 120.86717 * 179.97438 * 24 22 21 39 39 H 1.09000 * 109.58741 * 173.14740 * 25 15 14 40 40 H 1.09001 * 109.58357 * 293.57357 * 25 15 14 41 41 H 1.08994 * 109.56882 * 185.55210 * 26 25 15 42 42 H 1.09007 * 109.35756 * 65.49917 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 8 0.2433 -4.7439 1.1687 13 6 1.8295 -6.1449 0.0018 14 6 0.8314 -7.3065 0.0374 15 7 -0.1110 -7.1546 -1.0795 16 6 -0.3086 -8.1617 -1.9531 17 8 -1.1411 -8.0496 -2.8317 18 6 0.4830 -9.4052 -1.8391 19 6 0.5888 -10.0692 -0.6160 20 7 1.2895 -11.1792 -0.5146 21 6 1.9229 -11.7006 -1.5480 22 6 1.8722 -11.1000 -2.7941 23 17 2.7131 -11.8014 -4.1411 24 6 1.1432 -9.9332 -2.9546 25 6 -0.8294 -5.8817 -1.2295 26 6 0.1831 -4.7381 -1.2476 27 1 -0.4851 0.8399 -0.0004 28 1 0.3557 -2.3881 0.0005 29 1 2.6849 -3.7144 0.8905 30 1 2.6848 -3.7144 -0.8895 31 1 -0.2719 -3.9283 1.2349 32 1 2.4742 -6.1922 0.8795 33 1 2.4369 -6.2146 -0.9005 34 1 0.2856 -7.2905 0.9808 35 1 1.3663 -8.2510 -0.0618 36 1 0.0877 -9.6713 0.2540 37 1 2.4904 -12.6105 -1.4194 38 1 1.0865 -9.4430 -3.9152 39 1 -1.3900 -5.8865 -2.1643 40 1 -1.5134 -5.7473 -0.3915 41 1 -0.3439 -3.7841 -1.2594 42 1 0.8060 -4.8211 -2.1383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502890825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:45 Heat of formation + Delta-G solvation = -56.216229 kcal Electronic energy + Delta-G solvation = -27166.342556 eV Core-core repulsion = 23171.871122 eV Total energy + Delta-G solvation = -3994.471434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.13614 -40.83254 -39.61821 -37.75703 -36.94864 -35.77631 -33.95266 -33.48049 -32.93652 -32.26894 -31.53122 -28.39626 -26.24174 -25.57085 -24.86049 -24.11890 -23.36990 -21.71504 -20.51682 -19.48708 -18.86702 -18.30585 -17.86983 -17.46448 -17.11067 -16.73389 -16.32273 -16.15146 -15.84347 -15.71338 -15.28218 -15.06438 -14.90919 -14.61677 -14.51041 -14.43737 -14.12473 -13.82006 -13.49244 -13.23732 -13.07946 -12.99943 -12.81902 -12.74753 -12.35020 -12.32206 -12.23484 -12.07538 -11.97873 -11.61799 -11.32586 -11.06667 -10.99286 -10.77617 -10.66569 -10.09142 -9.77598 -9.02991 -7.97935 -5.26092 -0.53313 -0.19469 0.81535 1.42580 1.47002 1.47864 1.57098 1.77434 2.41469 2.53945 3.05896 3.23702 3.33192 3.40065 3.50138 3.55159 3.63459 3.70859 3.86620 3.91968 3.98730 4.11378 4.20664 4.27364 4.38655 4.53354 4.65223 4.67561 4.69368 4.75769 4.81376 4.88290 4.94747 5.06248 5.11021 5.17527 5.27705 5.42278 5.49137 6.19662 6.24193 6.54316 6.71931 6.86879 7.32197 8.03761 8.27671 9.25006 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021005 B = 0.002353 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.682583 B =11897.881021 C =12160.072373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.069 4.069 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.293 1.293 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.738 5.738 10 C 0.127 3.873 11 C 0.138 3.862 12 O -0.559 6.559 13 C -0.115 4.115 14 C 0.108 3.892 15 N -0.592 5.592 16 C 0.565 3.435 17 O -0.571 6.571 18 C -0.172 4.172 19 C 0.140 3.860 20 N -0.476 5.476 21 C 0.138 3.862 22 C -0.093 4.093 23 Cl -0.038 7.038 24 C -0.024 4.024 25 C 0.125 3.875 26 C -0.148 4.148 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.382 0.618 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.188 0.812 37 H 0.198 0.802 38 H 0.151 0.849 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.173 -26.078 -2.411 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.220 1.220 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.382 5.382 10 C 0.001 3.999 11 C 0.097 3.903 12 O -0.366 6.366 13 C -0.154 4.154 14 C -0.014 4.014 15 N -0.323 5.323 16 C 0.352 3.648 17 O -0.451 6.451 18 C -0.178 4.178 19 C -0.018 4.018 20 N -0.184 5.184 21 C -0.019 4.019 22 C -0.122 4.122 23 Cl -0.009 7.009 24 C -0.051 4.051 25 C 0.003 3.997 26 C -0.186 4.186 27 H 0.061 0.939 28 H 0.210 0.790 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.231 0.769 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.205 0.795 37 H 0.215 0.785 38 H 0.169 0.831 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.291 -26.978 -2.050 27.394 hybrid contribution -0.302 2.516 -1.309 2.852 sum 3.988 -24.462 -3.359 25.012 Atomic orbital electron populations 1.69765 1.06332 1.26084 1.59289 1.25472 0.96386 1.00796 1.03559 0.85145 0.78236 0.80156 0.76629 1.19313 1.22180 1.22022 1.19577 0.91405 0.85289 1.41347 0.90986 1.42419 1.05554 1.00810 1.89441 1.21471 0.94564 0.85695 0.98214 1.21239 0.89753 0.94716 0.84567 1.86349 1.61430 1.45053 1.43760 1.21878 0.97634 0.91417 1.04423 1.22122 0.90722 0.99260 0.89280 1.48095 1.42704 1.13524 1.27937 1.18296 0.82295 0.83347 0.80824 1.90800 1.36212 1.81743 1.36358 1.20782 1.02718 0.98033 0.96236 1.23439 0.92808 0.89666 0.95870 1.68006 1.08127 1.10827 1.31446 1.23476 0.93804 0.99126 0.85517 1.21981 1.01135 0.97071 0.92051 1.98414 1.75774 1.82983 1.43776 1.21621 0.91383 0.92992 0.99086 1.21398 0.94062 0.81106 1.03156 1.22337 0.98829 0.98634 0.98849 0.93922 0.79035 0.95638 0.95708 0.76947 0.88374 0.89738 0.88748 0.87668 0.79524 0.78543 0.83133 0.90124 0.89886 0.91154 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.43 13.06 21.65 0.28 -56.15 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 3 Si 0.97 45.01 29.55 68.60 2.03 47.04 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.24 -13.09 9.99 84.03 0.84 -12.25 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 9 N -0.74 -34.60 5.07 -343.44 -1.74 -36.34 16 10 C 0.13 4.70 5.40 86.38 0.47 5.16 16 11 C 0.14 3.94 0.71 -10.77 -0.01 3.93 16 12 O -0.56 -16.46 11.71 -148.98 -1.74 -18.20 16 13 C -0.12 -2.45 5.11 30.67 0.16 -2.29 16 14 C 0.11 1.92 5.13 86.36 0.44 2.36 16 15 N -0.59 -13.27 2.98 -823.15 -2.45 -15.72 16 16 C 0.56 13.77 7.26 86.79 0.63 14.40 16 17 O -0.57 -18.37 16.48 -3.90 -0.06 -18.44 16 18 C -0.17 -3.22 5.02 -20.00 -0.10 -3.32 16 19 C 0.14 2.12 8.55 85.04 0.73 2.85 16 20 N -0.48 -7.17 10.34 -194.67 -2.01 -9.18 16 21 C 0.14 1.70 10.97 84.72 0.93 2.63 16 22 C -0.09 -1.32 6.34 22.38 0.14 -1.17 16 23 Cl -0.04 -0.49 28.98 -2.72 -0.08 -0.57 16 24 C -0.02 -0.41 9.70 22.75 0.22 -0.19 16 25 C 0.12 3.23 6.16 86.22 0.53 3.76 16 26 C -0.15 -4.30 4.91 30.53 0.15 -4.15 16 27 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.38 18.20 5.58 -92.71 -0.52 17.69 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.38 11.92 7.85 -74.06 -0.58 11.34 16 32 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 1.62 7.81 -2.39 -0.02 1.60 16 35 H 0.11 1.44 4.54 -2.39 -0.01 1.43 16 36 H 0.19 2.14 7.04 -2.91 -0.02 2.12 16 37 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.08 2.29 7.03 -2.39 -0.02 2.27 16 40 H 0.08 2.07 7.81 -2.39 -0.02 2.05 16 41 H 0.07 2.40 6.82 -2.39 -0.02 2.38 16 42 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -66.61 357.70 -0.20 -66.81 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -0.02 Total: 32.42 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 5.59 Total: 8.34 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -5.92 Total: -117.40 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.81 Total: -36.64 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.57 kcal Total: -66.61 -0.20 -66.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502890825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.594 kcal (2) G-P(sol) polarization free energy of solvation -66.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds