Wall clock time and date at job start Tue Mar 31 2020 22:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40167 * 120.36165 * 2 1 4 4 N 1.31268 * 120.35431 * 179.97438 * 3 2 1 5 5 C 1.33985 * 120.87946 * 0.03648 * 4 3 2 6 6 N 1.32505 * 132.33940 * 179.97438 * 5 4 3 7 7 C 1.33485 * 109.75006 * 179.97438 * 6 5 4 8 8 C 1.48084 * 125.32294 * 179.97438 * 7 6 5 9 9 O 1.21540 * 119.99855 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00006 * 0.30487 * 8 7 6 11 11 C 1.39894 * 119.99942 * 175.21721 * 10 8 7 12 12 C 1.38946 * 120.00747 * 214.86024 * 11 10 8 13 13 C 1.37995 * 120.00171 * 179.79046 * 12 11 10 14 14 C 1.38920 * 119.99912 * 0.48978 * 13 12 11 15 15 O 1.35776 * 119.99333 * 179.72311 * 14 13 12 16 16 C 1.34813 * 116.99488 * 185.36513 * 15 14 13 17 17 H 1.08000 * 120.00342 * 354.95964 * 16 15 14 18 18 C 1.38638 * 119.99591 * 174.96528 * 16 15 14 19 19 N 1.31567 * 119.99921 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99560 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47228 * 60.00387 * 20 18 16 22 22 H 1.48505 * 109.46608 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47423 * 299.99789 * 20 18 16 24 24 C 1.38916 * 120.00699 * 359.74066 * 14 13 12 25 25 C 1.37997 * 120.00283 * 0.02562 * 24 14 13 26 26 N 1.31997 * 109.34922 * 0.26614 * 7 6 5 27 27 N 1.36869 * 120.22340 * 359.95834 * 5 4 3 28 28 C 1.35684 * 120.36682 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.47209 * 270.02252 * 1 2 3 30 30 H 1.08995 * 109.47370 * 30.02248 * 1 2 3 31 31 H 1.09002 * 109.47133 * 150.02713 * 1 2 3 32 32 H 1.07991 * 119.82216 * 359.97438 * 3 2 1 33 33 H 0.96999 * 120.00418 * 355.21742 * 10 8 7 34 34 H 1.08003 * 120.00201 * 359.97438 * 12 11 10 35 35 H 1.07995 * 120.00305 * 180.22832 * 13 12 11 36 36 H 0.97005 * 120.00019 * 179.97438 * 19 18 16 37 37 H 1.08003 * 119.99754 * 180.02562 * 24 14 13 38 38 H 1.08002 * 119.99843 * 179.97438 * 25 24 14 39 39 H 1.08010 * 120.48338 * 0.04322 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.2094 0.0000 4 7 3.5282 1.2093 0.0005 5 6 4.2157 0.0593 0.0003 6 7 5.5143 -0.2042 0.0003 7 6 5.7066 -1.5251 0.0006 8 6 7.0256 -2.1983 0.0001 9 8 7.0883 -3.4121 0.0000 10 7 8.1564 -1.4651 0.0055 11 6 9.3999 -2.0980 0.1060 12 6 10.4350 -1.4892 0.8051 13 6 11.6603 -2.1156 0.9078 14 6 11.8620 -3.3502 0.3038 15 8 13.0694 -3.9638 0.4003 16 6 13.2339 -5.1042 -0.2997 17 1 12.4008 -5.5333 -0.8365 18 6 14.4726 -5.7261 -0.3302 19 7 15.4876 -5.2031 0.3234 20 14 14.7004 -7.3066 -1.2995 21 1 14.3877 -7.0594 -2.7300 22 1 16.1068 -7.7663 -1.1731 23 1 13.7881 -8.3501 -0.7665 24 6 10.8288 -3.9569 -0.3991 25 6 9.6019 -3.3328 -0.4980 26 7 4.5372 -2.1373 -0.0049 27 7 3.5541 -1.1389 0.0004 28 6 2.1930 -1.1707 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6786 2.1464 -0.0004 33 1 8.1081 -0.4985 -0.0604 34 1 10.2797 -0.5270 1.2705 35 1 12.4637 -1.6441 1.4543 36 1 16.3542 -5.6384 0.3023 37 1 10.9857 -4.9169 -0.8683 38 1 8.7988 -3.8044 -1.0449 39 1 1.6668 -2.1140 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521188850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:23 Heat of formation + Delta-G solvation = 117.499917 kcal Electronic energy + Delta-G solvation = -26671.381358 eV Core-core repulsion = 22583.335328 eV Total energy + Delta-G solvation = -4088.046031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.41532 -40.34814 -39.36757 -38.53868 -36.52460 -35.26712 -34.15002 -33.53179 -32.17887 -31.28374 -30.21088 -28.77102 -27.53706 -25.90358 -25.30721 -24.20850 -23.38964 -22.32882 -21.37123 -20.22922 -19.15621 -18.56479 -18.15239 -17.68755 -17.21552 -16.86218 -16.43014 -16.20140 -15.18863 -14.80820 -14.56824 -14.45906 -14.38573 -14.02122 -13.88793 -13.59864 -13.57065 -13.21066 -13.06107 -13.02161 -12.88547 -12.58325 -12.31438 -11.74954 -11.61264 -11.54535 -11.00413 -10.80462 -10.78259 -10.60038 -10.44371 -10.16583 -10.11471 -9.73391 -9.29348 -9.21244 -8.70197 -8.20794 -6.96461 -6.43710 -4.00996 -0.22893 0.05569 1.21853 1.36137 2.17130 2.24511 2.53863 2.71077 2.92078 3.15501 3.16551 3.19925 3.23851 3.57259 3.64556 3.95953 3.99116 4.13429 4.31624 4.55517 4.61897 4.81693 4.97048 5.10700 5.11179 5.25733 5.27024 5.44595 5.51173 5.57342 5.68981 5.74527 6.08419 6.16772 6.30335 6.69982 6.78930 6.83947 6.97886 7.03752 7.24260 7.29340 7.43422 7.62188 7.74104 8.01193 8.15273 9.01811 9.70463 10.73866 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034907 B = 0.001845 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.933844 B =15173.389216 C =15845.688715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.185 4.185 3 C 0.213 3.787 4 N -0.445 5.445 5 C 0.438 3.562 6 N -0.498 5.498 7 C 0.247 3.753 8 C 0.599 3.401 9 O -0.492 6.492 10 N -0.627 5.627 11 C 0.027 3.973 12 C -0.084 4.084 13 C -0.177 4.177 14 C 0.150 3.850 15 O -0.174 6.174 16 C -0.391 4.391 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.221 4.221 25 C -0.062 4.062 26 N -0.265 5.265 27 N -0.325 5.325 28 C 0.167 3.833 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.193 0.807 33 H 0.415 0.585 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.271 0.729 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.250 13.089 -1.264 33.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.193 4.193 3 C 0.026 3.974 4 N -0.158 5.158 5 C 0.077 3.923 6 N -0.232 5.232 7 C -0.037 4.037 8 C 0.380 3.620 9 O -0.363 6.363 10 N -0.272 5.272 11 C -0.065 4.065 12 C -0.104 4.104 13 C -0.197 4.197 14 C 0.095 3.905 15 O -0.077 6.077 16 C -0.467 4.467 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.194 1.194 24 C -0.241 4.241 25 C -0.081 4.081 26 N -0.099 5.099 27 N -0.105 5.105 28 C 0.031 3.969 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.210 0.790 33 H 0.251 0.749 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.081 0.919 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -29.646 12.264 -1.089 32.102 hybrid contribution -0.760 -0.860 -0.495 1.250 sum -30.406 11.404 -1.584 32.513 Atomic orbital electron populations 1.20655 0.86860 1.04424 1.03719 1.20684 0.99479 0.91984 1.07111 1.23657 0.88050 0.99010 0.86733 1.68104 1.08741 1.22277 1.16665 1.22671 0.89337 0.82907 0.97348 1.70844 1.10959 1.13710 1.27719 1.24261 0.95003 0.87610 0.96784 1.16299 0.80642 0.85974 0.79112 1.90874 1.85396 1.12212 1.47811 1.42799 1.03438 1.10774 1.70187 1.17201 0.84366 0.97216 1.07750 1.20374 0.92239 0.99607 0.98156 1.19996 0.97620 0.94990 1.07097 1.19438 0.86605 0.91424 0.93011 1.83973 1.26843 1.36316 1.60540 1.21311 0.97287 0.98991 1.29143 0.88972 1.25290 0.94231 0.99528 0.97425 1.70035 1.01320 1.39061 1.39176 0.85775 0.77919 0.80166 0.79565 1.19464 1.20288 1.19446 1.21089 0.93082 1.02778 1.07112 1.20860 0.96663 0.93735 0.96881 1.78996 0.95105 1.06797 1.29017 1.49009 1.07110 1.08796 1.45544 1.22074 0.79256 1.01755 0.93851 0.89913 0.89815 0.90427 0.79002 0.74853 0.86339 0.85816 0.91948 0.85024 0.85626 0.79744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.06 10.03 36.01 0.36 0.42 16 2 C -0.19 -0.58 5.87 -104.81 -0.61 -1.19 16 3 C 0.21 0.92 10.96 -17.07 -0.19 0.73 16 4 N -0.44 -4.25 10.48 -13.79 -0.14 -4.39 16 5 C 0.44 5.46 8.98 -323.04 -2.90 2.56 16 6 N -0.50 -7.28 10.89 -12.24 -0.13 -7.41 16 7 C 0.25 3.86 7.92 -156.78 -1.24 2.62 16 8 C 0.60 10.32 7.68 -12.22 -0.09 10.23 16 9 O -0.49 -9.92 14.51 5.33 0.08 -9.84 16 10 N -0.63 -10.03 5.33 -10.61 -0.06 -10.08 16 11 C 0.03 0.50 6.30 -83.65 -0.53 -0.03 16 12 C -0.08 -1.51 9.96 -39.41 -0.39 -1.90 16 13 C -0.18 -3.73 9.99 -39.42 -0.39 -4.12 16 14 C 0.15 3.66 6.65 -39.08 -0.26 3.40 16 15 O -0.17 -4.98 9.75 0.02 0.00 -4.98 16 16 C -0.39 -11.05 9.48 30.88 0.29 -10.75 16 17 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 19 N -0.86 -25.34 13.67 55.48 0.76 -24.58 16 20 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 C -0.22 -5.05 9.16 -39.42 -0.36 -5.41 16 25 C -0.06 -1.28 8.69 -39.41 -0.34 -1.62 16 26 N -0.27 -3.95 12.78 32.02 0.41 -3.54 16 27 N -0.32 -3.65 3.91 -13.80 -0.05 -3.71 16 28 C 0.17 0.99 10.97 -16.55 -0.18 0.81 16 29 H 0.08 -0.09 8.14 -51.93 -0.42 -0.52 16 30 H 0.08 -0.16 8.10 -51.93 -0.42 -0.58 16 31 H 0.08 -0.08 8.09 -51.93 -0.42 -0.50 16 32 H 0.19 -0.04 8.06 -52.49 -0.42 -0.46 16 33 H 0.41 5.57 8.50 -40.82 -0.35 5.22 16 34 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.13 3.01 5.63 -52.48 -0.30 2.71 16 38 H 0.13 2.56 6.22 -52.49 -0.33 2.24 16 39 H 0.19 0.52 8.06 -52.48 -0.42 0.10 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -37.26 350.74 -9.15 -46.41 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -3.33 Total: 4.29 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -6.94 Total: -3.25 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.78 Total: -53.71 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.08 Total: -14.83 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.26 -9.15 -46.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521188850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.908 kcal (2) G-P(sol) polarization free energy of solvation -37.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds