Wall clock time and date at job start Tue Mar 31 2020 22:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40167 * 120.36165 * 2 1 4 4 N 1.31268 * 120.35431 * 179.97438 * 3 2 1 5 5 C 1.33985 * 120.87946 * 0.03648 * 4 3 2 6 6 N 1.32505 * 132.33940 * 179.97438 * 5 4 3 7 7 C 1.33485 * 109.75006 * 179.97438 * 6 5 4 8 8 C 1.48084 * 125.32294 * 179.97438 * 7 6 5 9 9 O 1.21540 * 119.99855 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00006 * 0.30487 * 8 7 6 11 11 C 1.39894 * 119.99942 * 175.21721 * 10 8 7 12 12 C 1.38946 * 120.00747 * 214.86024 * 11 10 8 13 13 C 1.37995 * 120.00171 * 179.79046 * 12 11 10 14 14 C 1.38920 * 119.99912 * 0.48978 * 13 12 11 15 15 O 1.35776 * 119.99333 * 179.72311 * 14 13 12 16 16 C 1.34813 * 116.99488 * 185.36513 * 15 14 13 17 17 H 1.08000 * 120.00342 * 354.95964 * 16 15 14 18 18 C 1.38638 * 119.99591 * 174.96528 * 16 15 14 19 19 N 1.31567 * 119.99921 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99560 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47228 * 60.00387 * 20 18 16 22 22 H 1.48505 * 109.46608 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47423 * 299.99789 * 20 18 16 24 24 C 1.38916 * 120.00699 * 359.74066 * 14 13 12 25 25 C 1.37997 * 120.00283 * 0.02562 * 24 14 13 26 26 N 1.31997 * 109.34922 * 0.26614 * 7 6 5 27 27 N 1.36869 * 120.22340 * 359.95834 * 5 4 3 28 28 C 1.35684 * 120.36682 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.47209 * 270.02252 * 1 2 3 30 30 H 1.08995 * 109.47370 * 30.02248 * 1 2 3 31 31 H 1.09002 * 109.47133 * 150.02713 * 1 2 3 32 32 H 1.07991 * 119.82216 * 359.97438 * 3 2 1 33 33 H 0.96999 * 120.00418 * 355.21742 * 10 8 7 34 34 H 1.08003 * 120.00201 * 359.97438 * 12 11 10 35 35 H 1.07995 * 120.00305 * 180.22832 * 13 12 11 36 36 H 0.97005 * 120.00019 * 179.97438 * 19 18 16 37 37 H 1.08003 * 119.99754 * 180.02562 * 24 14 13 38 38 H 1.08002 * 119.99843 * 179.97438 * 25 24 14 39 39 H 1.08010 * 120.48338 * 0.04322 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.2094 0.0000 4 7 3.5282 1.2093 0.0005 5 6 4.2157 0.0593 0.0003 6 7 5.5143 -0.2042 0.0003 7 6 5.7066 -1.5251 0.0006 8 6 7.0256 -2.1983 0.0001 9 8 7.0883 -3.4121 0.0000 10 7 8.1564 -1.4651 0.0055 11 6 9.3999 -2.0980 0.1060 12 6 10.4350 -1.4892 0.8051 13 6 11.6603 -2.1156 0.9078 14 6 11.8620 -3.3502 0.3038 15 8 13.0694 -3.9638 0.4003 16 6 13.2339 -5.1042 -0.2997 17 1 12.4008 -5.5333 -0.8365 18 6 14.4726 -5.7261 -0.3302 19 7 15.4876 -5.2031 0.3234 20 14 14.7004 -7.3066 -1.2995 21 1 14.3877 -7.0594 -2.7300 22 1 16.1068 -7.7663 -1.1731 23 1 13.7881 -8.3501 -0.7665 24 6 10.8288 -3.9569 -0.3991 25 6 9.6019 -3.3328 -0.4980 26 7 4.5372 -2.1373 -0.0049 27 7 3.5541 -1.1389 0.0004 28 6 2.1930 -1.1707 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6786 2.1464 -0.0004 33 1 8.1081 -0.4985 -0.0604 34 1 10.2797 -0.5270 1.2705 35 1 12.4637 -1.6441 1.4543 36 1 16.3542 -5.6384 0.3023 37 1 10.9857 -4.9169 -0.8683 38 1 8.7988 -3.8044 -1.0449 39 1 1.6668 -2.1140 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521188850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:22 Heat of formation + Delta-G solvation = 92.534437 kcal Electronic energy + Delta-G solvation = -26672.463943 eV Core-core repulsion = 22583.335328 eV Total energy + Delta-G solvation = -4089.128615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.21949 -41.71945 -40.56449 -39.89638 -38.23730 -35.97631 -35.58695 -34.27722 -34.04301 -32.16188 -31.90881 -30.14130 -28.34471 -27.32379 -26.45335 -25.24555 -24.02779 -23.97137 -22.91512 -21.55662 -20.16630 -19.81215 -19.37138 -19.10328 -18.37535 -18.05810 -17.92339 -16.84756 -16.62104 -16.28862 -16.03198 -15.70237 -15.51960 -15.28740 -15.14810 -14.69992 -14.58302 -14.39331 -14.19848 -13.79653 -13.64146 -13.60028 -13.39134 -13.29847 -13.06183 -12.92950 -12.71734 -12.49857 -12.14936 -11.79236 -11.69200 -11.47423 -11.15771 -11.02793 -10.89726 -10.61301 -9.93914 -9.89027 -8.72240 -8.47437 -6.14308 -0.84977 -0.60129 0.24716 0.45653 0.50101 0.72334 1.35449 1.44964 1.50297 1.51190 1.81655 2.05578 2.17985 2.21152 2.77267 2.78952 3.09882 3.15364 3.32957 3.47954 3.71977 3.89394 4.03929 4.07842 4.14750 4.37292 4.44282 4.54165 4.62202 4.71149 4.80300 4.94320 4.95856 5.03855 5.05526 5.06668 5.26666 5.35768 5.41955 5.47964 5.65314 5.97823 6.01501 6.08761 6.21061 6.48339 6.79026 6.96961 7.74323 8.74689 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034907 B = 0.001845 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.933844 B =15173.389216 C =15845.688715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.146 4.146 3 C 0.226 3.774 4 N -0.475 5.475 5 C 0.422 3.578 6 N -0.522 5.522 7 C 0.231 3.769 8 C 0.606 3.394 9 O -0.527 6.527 10 N -0.617 5.617 11 C 0.051 3.949 12 C -0.067 4.067 13 C -0.176 4.176 14 C 0.114 3.886 15 O -0.222 6.222 16 C -0.416 4.416 17 H 0.099 0.901 18 C -0.019 4.019 19 N -0.915 5.915 20 Si 1.016 2.984 21 H -0.258 1.258 22 H -0.269 1.269 23 H -0.260 1.260 24 C -0.227 4.227 25 C -0.071 4.071 26 N -0.295 5.295 27 N -0.324 5.324 28 C 0.134 3.866 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.245 0.755 33 H 0.431 0.569 34 H 0.167 0.833 35 H 0.134 0.866 36 H 0.274 0.726 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.136 15.333 -1.583 39.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.153 4.153 3 C 0.042 3.958 4 N -0.190 5.190 5 C 0.063 3.937 6 N -0.258 5.258 7 C -0.053 4.053 8 C 0.388 3.612 9 O -0.401 6.401 10 N -0.263 5.263 11 C -0.042 4.042 12 C -0.087 4.087 13 C -0.196 4.196 14 C 0.063 3.937 15 O -0.128 6.128 16 C -0.492 4.492 17 H 0.116 0.884 18 C -0.217 4.217 19 N -0.553 5.553 20 Si 0.835 3.165 21 H -0.183 1.183 22 H -0.193 1.193 23 H -0.185 1.185 24 C -0.247 4.247 25 C -0.091 4.091 26 N -0.131 5.131 27 N -0.104 5.104 28 C 0.000 4.000 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.261 0.739 33 H 0.270 0.730 34 H 0.184 0.816 35 H 0.152 0.848 36 H 0.083 0.917 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -34.658 14.587 -1.410 37.629 hybrid contribution 0.087 -1.178 -0.359 1.234 sum -34.571 13.409 -1.769 37.122 Atomic orbital electron populations 1.20880 0.83266 1.06265 1.05177 1.21257 1.01377 0.90379 1.02313 1.24719 0.86571 1.01563 0.82917 1.68257 1.10972 1.20874 1.18931 1.22859 0.89188 0.84012 0.97686 1.70673 1.12954 1.13069 1.29139 1.23615 0.94248 0.88260 0.99167 1.16489 0.81481 0.85556 0.77682 1.90848 1.86189 1.13817 1.49203 1.42673 1.02249 1.11452 1.69925 1.17343 0.85477 0.96120 1.05283 1.20763 0.90380 1.00858 0.96705 1.20310 0.99140 0.93867 1.06285 1.19948 0.86083 0.92936 0.94722 1.83941 1.28913 1.37342 1.62647 1.21760 0.98092 0.99586 1.29768 0.88360 1.26529 0.93513 1.03240 0.98395 1.70168 1.02003 1.41363 1.41739 0.84687 0.78274 0.75328 0.78181 1.18283 1.19296 1.18463 1.21087 0.93681 1.02707 1.07199 1.20923 0.95813 0.94806 0.97553 1.78797 0.95625 1.08683 1.29994 1.49007 1.08288 1.07589 1.45476 1.22944 0.77395 1.04380 0.95279 0.88298 0.87315 0.89341 0.73915 0.72976 0.81565 0.84775 0.91731 0.85988 0.85461 0.77170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.69 10.03 71.24 0.71 1.40 16 2 C -0.15 -0.26 5.87 -19.99 -0.12 -0.38 16 3 C 0.23 0.94 10.96 85.25 0.93 1.87 16 4 N -0.47 -7.92 10.48 -197.54 -2.07 -9.99 16 5 C 0.42 10.12 8.98 261.57 2.35 12.47 16 6 N -0.52 -15.19 10.89 -192.64 -2.10 -17.29 16 7 C 0.23 7.30 7.92 137.37 1.09 8.39 16 8 C 0.61 21.05 7.68 86.86 0.67 21.72 16 9 O -0.53 -21.78 14.51 -3.84 -0.06 -21.83 16 10 N -0.62 -19.18 5.33 -305.76 -1.63 -20.81 16 11 C 0.05 1.85 6.30 38.19 0.24 2.09 16 12 C -0.07 -2.31 9.96 22.38 0.22 -2.09 16 13 C -0.18 -7.44 9.99 22.38 0.22 -7.22 16 14 C 0.11 5.84 6.65 22.60 0.15 5.99 16 15 O -0.22 -13.54 9.75 -22.86 -0.22 -13.76 16 16 C -0.42 -24.81 9.48 67.92 0.64 -24.17 16 17 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 18 C -0.02 -1.07 5.49 84.83 0.47 -0.61 16 19 N -0.92 -56.50 13.67 21.61 0.30 -56.20 16 20 Si 1.02 44.05 29.55 68.60 2.03 46.08 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 24 C -0.23 -10.84 9.16 22.38 0.20 -10.63 16 25 C -0.07 -3.00 8.69 22.38 0.19 -2.80 16 26 N -0.30 -8.87 12.78 -52.62 -0.67 -9.55 16 27 N -0.32 -6.96 3.91 -197.58 -0.77 -7.74 16 28 C 0.13 1.23 10.97 83.43 0.92 2.14 16 29 H 0.10 -0.82 8.14 -2.38 -0.02 -0.84 16 30 H 0.11 -1.16 8.10 -2.39 -0.02 -1.18 16 31 H 0.09 -0.67 8.09 -2.39 -0.02 -0.69 16 32 H 0.24 -1.67 8.06 -2.92 -0.02 -1.70 16 33 H 0.43 10.91 8.50 -92.71 -0.79 10.12 16 34 H 0.17 4.17 8.06 -2.91 -0.02 4.14 16 35 H 0.13 5.33 8.06 -2.91 -0.02 5.31 16 36 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 37 H 0.12 5.94 5.63 -2.91 -0.02 5.92 16 38 H 0.13 5.35 6.22 -2.91 -0.02 5.33 16 39 H 0.21 0.61 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -90.09 350.74 4.06 -86.03 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.36 Total: 16.88 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 8.90 Total: 8.19 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -6.95 Total: -121.58 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.28 Total: -35.59 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -90.09 4.06 -86.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521188850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.565 kcal (2) G-P(sol) polarization free energy of solvation -90.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds