Wall clock time and date at job start Tue Mar 31 2020 22:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39360 * 119.78671 * 2 1 4 4 C 1.37014 * 119.16214 * 179.97438 * 3 2 1 5 5 N 1.38163 * 120.57918 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00356 * 341.81850 * 5 4 3 7 7 O 1.21582 * 119.99955 * 354.45509 * 6 5 4 8 8 C 1.47473 * 120.00191 * 174.45041 * 6 5 4 9 9 C 1.39703 * 120.19959 * 0.02562 * 8 6 5 10 10 C 1.37811 * 119.91601 * 180.02562 * 9 8 6 11 11 C 1.38580 * 120.32827 * 359.97438 * 10 9 8 12 12 C 1.38033 * 120.41025 * 359.97438 * 11 10 9 13 13 C 1.38836 * 120.07180 * 0.02562 * 12 11 10 14 14 O 1.35509 * 120.16283 * 180.02562 * 13 12 11 15 15 C 1.34816 * 116.99803 * 5.59038 * 14 13 12 16 16 H 1.07988 * 120.00316 * 354.94342 * 15 14 13 17 17 C 1.38702 * 119.99672 * 174.94794 * 15 14 13 18 18 N 1.31518 * 120.00200 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47234 * 59.99681 * 19 17 15 21 21 H 1.48502 * 109.47549 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47012 * 299.99859 * 19 17 15 23 23 N 1.36467 * 118.83672 * 0.24821 * 4 3 2 24 24 N 1.40068 * 133.38993 * 180.42014 * 23 4 3 25 25 C 1.31088 * 107.03989 * 179.50786 * 24 23 4 26 26 N 1.32710 * 109.62509 * 359.77463 * 25 24 23 27 27 C 1.32835 * 109.74221 * 0.02562 * 26 25 24 28 28 N 1.31617 * 119.78422 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47307 * 90.00512 * 1 2 3 30 30 H 1.09000 * 109.47579 * 210.00579 * 1 2 3 31 31 H 1.08997 * 109.47251 * 330.00333 * 1 2 3 32 32 H 1.08008 * 120.42276 * 0.02562 * 3 2 1 33 33 H 0.97004 * 119.99748 * 161.82760 * 5 4 3 34 34 H 1.08000 * 120.03902 * 359.97438 * 9 8 6 35 35 H 1.07995 * 119.83781 * 179.97438 * 10 9 8 36 36 H 1.07998 * 119.80034 * 180.02562 * 11 10 9 37 37 H 1.07993 * 119.96432 * 179.75295 * 12 11 10 38 38 H 0.97006 * 120.00343 * 180.02562 * 18 17 15 39 39 H 1.08001 * 125.19427 * 179.74865 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.2095 0.0000 4 6 3.5693 1.1945 0.0005 5 7 4.2851 2.3763 0.0000 6 6 3.6860 3.5270 -0.3652 7 8 2.5469 3.5111 -0.7900 8 6 4.4119 4.8054 -0.2493 9 6 5.7210 4.8286 0.2379 10 6 6.3938 6.0266 0.3442 11 6 5.7784 7.2104 -0.0305 12 6 4.4857 7.2031 -0.5147 13 6 3.7924 6.0057 -0.6288 14 8 2.5235 5.9963 -1.1043 15 6 2.0313 7.1665 -1.5581 16 1 2.6115 8.0717 -1.4573 17 6 0.7797 7.2078 -2.1544 18 7 0.0732 6.1053 -2.2775 19 14 0.0979 8.8291 -2.7838 20 1 1.0076 9.3794 -3.8205 21 1 -1.2463 8.6052 -3.3738 22 1 -0.0092 9.7914 -1.6578 23 7 4.2145 -0.0080 -0.0041 24 7 5.5663 -0.3748 0.0024 25 6 5.6088 -1.6849 0.0036 26 7 4.3739 -2.1710 0.0031 27 6 3.4985 -1.1720 0.0010 28 7 2.1608 -1.1423 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6627 2.1468 0.0004 33 1 5.2190 2.3778 0.2624 34 1 6.2049 3.9088 0.5317 35 1 7.4056 6.0431 0.7214 36 1 6.3137 8.1444 0.0560 37 1 4.0117 8.1302 -0.8008 38 1 -0.8020 6.1341 -2.6949 39 1 6.5111 -2.2784 0.0043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525697134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:35 Heat of formation + Delta-G solvation = 122.954019 kcal Electronic energy + Delta-G solvation = -28404.449268 eV Core-core repulsion = 24316.639745 eV Total energy + Delta-G solvation = -4087.809523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.89649 -40.51829 -39.15661 -38.26002 -36.65587 -35.76499 -33.18288 -32.58419 -32.15378 -31.09657 -29.86671 -29.19396 -28.37874 -25.70110 -24.82919 -23.73865 -22.64572 -22.12619 -21.39579 -20.39079 -19.17813 -18.27837 -18.09480 -17.37345 -16.79732 -16.71856 -16.29404 -15.33494 -14.91001 -14.72607 -14.64256 -14.51446 -14.23146 -14.02494 -13.85900 -13.73904 -13.26539 -12.95457 -12.81089 -12.66756 -12.35650 -12.25247 -11.91591 -11.81315 -11.55017 -11.39004 -11.06844 -11.04865 -10.63509 -10.40986 -10.24254 -10.14093 -9.78042 -9.50604 -9.18747 -9.08412 -8.59238 -8.21177 -7.58568 -6.68296 -4.27239 0.45712 0.82609 1.37636 1.65853 2.07873 2.56382 2.73567 2.99220 3.01095 3.04075 3.17755 3.35745 3.52535 3.75223 4.11998 4.32129 4.54588 4.64757 4.79103 4.91773 5.02087 5.10060 5.25084 5.44433 5.47854 5.55785 5.60907 5.71192 5.79258 5.81444 5.86697 6.02571 6.15973 6.29357 6.30025 6.40381 6.48874 6.65272 6.80902 6.96215 7.05717 7.27462 7.42420 7.57001 7.70249 7.95255 8.27633 8.71717 9.37393 10.44641 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.003647 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.009662 B = 7676.637342 C = 9747.434223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.255 3.745 3 C -0.257 4.257 4 C 0.449 3.551 5 N -0.660 5.660 6 C 0.560 3.440 7 O -0.460 6.460 8 C -0.237 4.237 9 C -0.033 4.033 10 C -0.225 4.225 11 C -0.043 4.043 12 C -0.231 4.231 13 C 0.192 3.808 14 O -0.119 6.119 15 C -0.403 4.403 16 H 0.097 0.903 17 C 0.048 3.952 18 N -0.827 5.827 19 Si 0.943 3.057 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.267 1.267 23 N -0.351 5.351 24 N -0.355 5.355 25 C 0.253 3.747 26 N -0.540 5.540 27 C 0.474 3.526 28 N -0.494 5.494 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.206 0.794 33 H 0.420 0.580 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.136 0.864 38 H 0.275 0.725 39 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.400 -4.884 5.170 9.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.095 3.905 3 C -0.286 4.286 4 C 0.232 3.768 5 N -0.306 5.306 6 C 0.353 3.647 7 O -0.332 6.332 8 C -0.242 4.242 9 C -0.052 4.052 10 C -0.244 4.244 11 C -0.062 4.062 12 C -0.250 4.250 13 C 0.131 3.869 14 O -0.016 6.016 15 C -0.478 4.478 16 H 0.114 0.886 17 C -0.162 4.162 18 N -0.457 5.457 19 Si 0.766 3.234 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.192 1.192 23 N -0.135 5.135 24 N -0.187 5.187 25 C -0.049 4.049 26 N -0.275 5.275 27 C 0.114 3.886 28 N -0.215 5.215 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.222 0.778 33 H 0.258 0.742 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.086 0.914 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 5.487 -5.896 4.705 9.328 hybrid contribution 0.862 1.569 -0.204 1.802 sum 6.349 -4.326 4.502 8.905 Atomic orbital electron populations 1.20877 0.86068 1.04689 1.04727 1.21863 0.98110 0.86165 0.84313 1.22525 0.89552 1.03793 1.12726 1.17848 0.89039 0.77675 0.92263 1.43602 1.16112 1.04770 1.66121 1.18523 0.86802 0.82289 0.77094 1.90848 1.16705 1.84932 1.40673 1.18339 0.96256 0.89550 1.20088 1.20772 0.91963 0.97683 0.94809 1.20489 1.00594 0.92442 1.10912 1.20985 0.93908 0.97521 0.93792 1.21185 0.96270 0.98262 1.09313 1.19133 0.85225 0.91659 0.90844 1.84108 1.20165 1.34510 1.62861 1.21516 1.02112 0.85040 1.39176 0.88586 1.25415 0.95356 0.99399 0.95987 1.70077 1.11511 1.27028 1.37066 0.85754 0.78571 0.79681 0.79359 1.19229 1.19956 1.19188 1.48978 1.08103 1.07056 1.49412 1.78324 0.90258 1.15614 1.34454 1.26156 0.96308 0.89335 0.93094 1.70915 0.98611 1.26324 1.31639 1.22833 0.90079 0.80820 0.94870 1.67854 1.01445 1.28845 1.23365 0.88521 0.89474 0.88863 0.77756 0.74181 0.87032 0.86824 0.86743 0.84675 0.91437 0.75453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.18 36.00 0.37 -0.77 16 2 C 0.26 3.75 6.81 -82.27 -0.56 3.19 16 3 C -0.26 -4.17 8.47 -39.61 -0.34 -4.51 16 4 C 0.45 7.47 7.60 -153.01 -1.16 6.31 16 5 N -0.66 -10.56 5.31 -12.26 -0.07 -10.62 16 6 C 0.56 10.83 7.61 -12.50 -0.10 10.73 16 7 O -0.46 -10.54 12.01 -16.56 -0.20 -10.74 16 8 C -0.24 -4.56 5.89 -104.81 -0.62 -5.18 16 9 C -0.03 -0.51 9.53 -39.19 -0.37 -0.89 16 10 C -0.23 -3.28 10.02 -39.61 -0.40 -3.68 16 11 C -0.04 -0.67 10.03 -39.53 -0.40 -1.07 16 12 C -0.23 -4.40 9.16 -39.44 -0.36 -4.76 16 13 C 0.19 4.24 6.66 -38.59 -0.26 3.98 16 14 O -0.12 -3.13 7.84 -21.03 -0.16 -3.30 16 15 C -0.40 -10.31 9.49 30.90 0.29 -10.02 16 16 H 0.10 2.21 5.21 -52.49 -0.27 1.94 16 17 C 0.05 1.21 5.49 -17.51 -0.10 1.11 16 18 N -0.83 -22.52 13.67 55.48 0.76 -21.76 16 19 Si 0.94 18.76 29.55 -169.99 -5.02 13.74 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 N -0.35 -5.85 3.93 -13.16 -0.05 -5.90 16 24 N -0.35 -5.37 12.78 29.26 0.37 -4.99 16 25 C 0.25 3.36 12.98 -91.96 -1.19 2.17 16 26 N -0.54 -8.88 11.25 -15.66 -0.18 -9.06 16 27 C 0.47 8.25 9.00 -323.16 -2.91 5.34 16 28 N -0.49 -8.19 10.39 -10.16 -0.11 -8.29 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.21 3.61 5.33 -52.49 -0.28 3.33 16 33 H 0.42 5.73 6.87 -40.82 -0.28 5.45 16 34 H 0.11 1.35 6.42 -52.49 -0.34 1.01 16 35 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 36 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.14 2.52 5.64 -52.49 -0.30 2.23 16 38 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.23 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 343.29 15.07 5.17 5.17 Total: -1.00 -32.42 343.29 -10.71 -43.12 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -3.13 Total: 10.68 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -8.09 Total: 1.96 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.73 Total: -60.63 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.36 Total: -14.04 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.42 -10.71 -43.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525697134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.079 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds