Wall clock time and date at job start Tue Mar 31 2020 22:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39360 * 119.78671 * 2 1 4 4 C 1.37014 * 119.16214 * 179.97438 * 3 2 1 5 5 N 1.38163 * 120.57918 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00356 * 341.81850 * 5 4 3 7 7 O 1.21582 * 119.99955 * 354.45509 * 6 5 4 8 8 C 1.47473 * 120.00191 * 174.45041 * 6 5 4 9 9 C 1.39703 * 120.19959 * 0.02562 * 8 6 5 10 10 C 1.37811 * 119.91601 * 180.02562 * 9 8 6 11 11 C 1.38580 * 120.32827 * 359.97438 * 10 9 8 12 12 C 1.38033 * 120.41025 * 359.97438 * 11 10 9 13 13 C 1.38836 * 120.07180 * 0.02562 * 12 11 10 14 14 O 1.35509 * 120.16283 * 180.02562 * 13 12 11 15 15 C 1.34816 * 116.99803 * 5.59038 * 14 13 12 16 16 H 1.07988 * 120.00316 * 354.94342 * 15 14 13 17 17 C 1.38702 * 119.99672 * 174.94794 * 15 14 13 18 18 N 1.31518 * 120.00200 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47234 * 59.99681 * 19 17 15 21 21 H 1.48502 * 109.47549 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47012 * 299.99859 * 19 17 15 23 23 N 1.36467 * 118.83672 * 0.24821 * 4 3 2 24 24 N 1.40068 * 133.38993 * 180.42014 * 23 4 3 25 25 C 1.31088 * 107.03989 * 179.50786 * 24 23 4 26 26 N 1.32710 * 109.62509 * 359.77463 * 25 24 23 27 27 C 1.32835 * 109.74221 * 0.02562 * 26 25 24 28 28 N 1.31617 * 119.78422 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47307 * 90.00512 * 1 2 3 30 30 H 1.09000 * 109.47579 * 210.00579 * 1 2 3 31 31 H 1.08997 * 109.47251 * 330.00333 * 1 2 3 32 32 H 1.08008 * 120.42276 * 0.02562 * 3 2 1 33 33 H 0.97004 * 119.99748 * 161.82760 * 5 4 3 34 34 H 1.08000 * 120.03902 * 359.97438 * 9 8 6 35 35 H 1.07995 * 119.83781 * 179.97438 * 10 9 8 36 36 H 1.07998 * 119.80034 * 180.02562 * 11 10 9 37 37 H 1.07993 * 119.96432 * 179.75295 * 12 11 10 38 38 H 0.97006 * 120.00343 * 180.02562 * 18 17 15 39 39 H 1.08001 * 125.19427 * 179.74865 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.2095 0.0000 4 6 3.5693 1.1945 0.0005 5 7 4.2851 2.3763 0.0000 6 6 3.6860 3.5270 -0.3652 7 8 2.5469 3.5111 -0.7900 8 6 4.4119 4.8054 -0.2493 9 6 5.7210 4.8286 0.2379 10 6 6.3938 6.0266 0.3442 11 6 5.7784 7.2104 -0.0305 12 6 4.4857 7.2031 -0.5147 13 6 3.7924 6.0057 -0.6288 14 8 2.5235 5.9963 -1.1043 15 6 2.0313 7.1665 -1.5581 16 1 2.6115 8.0717 -1.4573 17 6 0.7797 7.2078 -2.1544 18 7 0.0732 6.1053 -2.2775 19 14 0.0979 8.8291 -2.7838 20 1 1.0076 9.3794 -3.8205 21 1 -1.2463 8.6052 -3.3738 22 1 -0.0092 9.7914 -1.6578 23 7 4.2145 -0.0080 -0.0041 24 7 5.5663 -0.3748 0.0024 25 6 5.6088 -1.6849 0.0036 26 7 4.3739 -2.1710 0.0031 27 6 3.4985 -1.1720 0.0010 28 7 2.1608 -1.1423 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6627 2.1468 0.0004 33 1 5.2190 2.3778 0.2624 34 1 6.2049 3.9088 0.5317 35 1 7.4056 6.0431 0.7214 36 1 6.3137 8.1444 0.0560 37 1 4.0117 8.1302 -0.8008 38 1 -0.8020 6.1341 -2.6949 39 1 6.5111 -2.2784 0.0043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525697134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:34 Heat of formation + Delta-G solvation = 105.671691 kcal Electronic energy + Delta-G solvation = -28405.198686 eV Core-core repulsion = 24316.639745 eV Total energy + Delta-G solvation = -4088.558941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.12511 -41.97158 -40.60275 -39.60845 -38.15950 -37.17768 -34.52244 -34.33267 -33.31317 -32.44204 -31.16060 -30.65721 -29.46203 -27.44942 -26.18636 -25.03499 -23.89261 -23.43106 -22.77450 -21.80111 -20.52223 -19.90318 -19.37619 -18.82709 -18.14984 -18.04243 -17.66267 -16.69751 -16.44097 -16.19515 -16.12888 -15.87384 -15.44225 -15.40812 -15.31973 -14.89138 -14.69630 -14.36107 -14.14639 -13.88735 -13.66416 -13.56477 -13.17523 -13.02870 -12.88202 -12.77474 -12.54466 -12.43941 -12.16009 -11.76954 -11.62799 -11.40297 -11.30814 -10.82754 -10.78010 -10.59376 -9.98642 -9.51705 -9.12025 -8.46632 -6.16224 -0.82289 -0.42635 -0.02376 0.37999 0.65910 1.36569 1.38640 1.42451 1.47232 1.52311 1.76485 2.15212 2.21429 2.26094 2.81151 2.92617 3.13943 3.26245 3.35567 3.62670 3.76164 3.89584 3.95768 4.21358 4.31463 4.40350 4.44098 4.47395 4.56213 4.71186 4.79143 4.85016 4.93095 5.02767 5.07298 5.09435 5.20531 5.28851 5.39491 5.51515 5.64000 5.88567 5.99406 6.07566 6.33089 6.74272 6.81220 6.93721 7.70683 8.71984 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.003647 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.009662 B = 7676.637342 C = 9747.434223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.260 3.740 3 C -0.263 4.263 4 C 0.437 3.563 5 N -0.643 5.643 6 C 0.562 3.438 7 O -0.502 6.502 8 C -0.248 4.248 9 C -0.030 4.030 10 C -0.199 4.199 11 C -0.030 4.030 12 C -0.253 4.253 13 C 0.163 3.837 14 O -0.178 6.178 15 C -0.428 4.428 16 H 0.109 0.891 17 C -0.012 4.012 18 N -0.893 5.893 19 Si 1.015 2.985 20 H -0.258 1.258 21 H -0.274 1.274 22 H -0.255 1.255 23 N -0.356 5.356 24 N -0.364 5.364 25 C 0.264 3.736 26 N -0.558 5.558 27 C 0.454 3.546 28 N -0.506 5.506 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.189 0.811 33 H 0.431 0.569 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.157 0.843 37 H 0.130 0.870 38 H 0.273 0.727 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.027 -4.741 6.399 12.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 C -0.292 4.292 4 C 0.220 3.780 5 N -0.290 5.290 6 C 0.355 3.645 7 O -0.376 6.376 8 C -0.253 4.253 9 C -0.048 4.048 10 C -0.217 4.217 11 C -0.048 4.048 12 C -0.272 4.272 13 C 0.106 3.894 14 O -0.080 6.080 15 C -0.504 4.504 16 H 0.126 0.874 17 C -0.213 4.213 18 N -0.528 5.528 19 Si 0.834 3.166 20 H -0.182 1.182 21 H -0.199 1.199 22 H -0.179 1.179 23 N -0.140 5.140 24 N -0.196 5.196 25 C -0.037 4.037 26 N -0.293 5.293 27 C 0.094 3.906 28 N -0.227 5.227 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.206 0.794 33 H 0.272 0.728 34 H 0.169 0.831 35 H 0.181 0.819 36 H 0.175 0.825 37 H 0.148 0.852 38 H 0.082 0.918 39 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 9.218 -5.761 5.978 12.405 hybrid contribution 0.208 1.334 -0.382 1.403 sum 9.426 -4.427 5.596 11.822 Atomic orbital electron populations 1.21035 0.83382 1.06078 1.05676 1.22363 0.99671 0.85110 0.82778 1.22474 0.89887 1.03812 1.12977 1.17878 0.89281 0.77947 0.92845 1.43241 1.16413 1.03822 1.65555 1.18678 0.86274 0.83205 0.76309 1.90861 1.18635 1.85635 1.42495 1.18736 0.97852 0.88665 1.20017 1.21255 0.90090 1.00194 0.93284 1.21153 1.02148 0.91176 1.07256 1.21509 0.92205 1.00031 0.91040 1.21343 0.97985 0.97077 1.10769 1.19870 0.85007 0.93867 0.90620 1.84115 1.22452 1.34931 1.66461 1.21976 1.02813 0.85700 1.39884 0.87396 1.26599 0.95526 1.03083 0.96093 1.70240 1.12254 1.29691 1.40571 0.84701 0.77667 0.75145 0.79055 1.18207 1.19882 1.17869 1.49013 1.08716 1.06579 1.49697 1.78312 0.89389 1.16704 1.35166 1.27189 0.96836 0.88998 0.90660 1.70963 0.99655 1.26413 1.32305 1.23198 0.90645 0.81401 0.95359 1.67939 1.01507 1.29289 1.23998 0.87539 0.87588 0.87912 0.79419 0.72753 0.83092 0.81932 0.82546 0.85241 0.91760 0.70514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.24 10.18 71.24 0.73 -1.51 16 2 C 0.26 7.79 6.81 42.86 0.29 8.08 16 3 C -0.26 -8.91 8.47 22.25 0.19 -8.72 16 4 C 0.44 14.71 7.60 131.59 1.00 15.71 16 5 N -0.64 -20.43 5.31 -310.95 -1.65 -22.08 16 6 C 0.56 22.41 7.61 86.68 0.66 23.07 16 7 O -0.50 -24.70 12.01 16.92 0.20 -24.50 16 8 C -0.25 -9.48 5.89 -19.99 -0.12 -9.60 16 9 C -0.03 -0.81 9.53 22.52 0.21 -0.59 16 10 C -0.20 -4.67 10.02 22.25 0.22 -4.45 16 11 C -0.03 -0.80 10.03 22.30 0.22 -0.58 16 12 C -0.25 -9.48 9.16 22.36 0.20 -9.27 16 13 C 0.16 7.40 6.66 22.91 0.15 7.55 16 14 O -0.18 -10.05 7.84 0.94 0.01 -10.04 16 15 C -0.43 -23.36 9.49 67.93 0.64 -22.72 16 16 H 0.11 5.25 5.21 -2.92 -0.02 5.23 16 17 C -0.01 -0.64 5.49 84.85 0.47 -0.17 16 18 N -0.89 -52.73 13.67 21.62 0.30 -52.43 16 19 Si 1.02 40.36 29.55 68.60 2.03 42.39 16 20 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 23 N -0.36 -11.63 3.93 -195.54 -0.77 -12.40 16 24 N -0.36 -10.29 12.78 -61.35 -0.78 -11.08 16 25 C 0.26 6.33 12.98 180.82 2.35 8.68 16 26 N -0.56 -17.55 11.25 -203.47 -2.29 -19.84 16 27 C 0.45 15.59 9.00 261.61 2.35 17.95 16 28 N -0.51 -16.75 10.39 -186.07 -1.93 -18.69 16 29 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.10 2.01 8.08 -2.39 -0.02 1.99 16 32 H 0.19 7.19 5.33 -3.11 -0.02 7.18 16 33 H 0.43 10.98 6.87 -92.70 -0.64 10.34 16 34 H 0.15 2.88 6.42 -2.91 -0.02 2.86 16 35 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.13 4.91 5.64 -2.91 -0.02 4.89 16 38 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 39 H 0.28 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -78.94 343.29 5.20 -73.74 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.52 Total: 31.50 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 9.58 Total: 23.43 kcal Atomic # 7 Polarization: -129.38 SS G_CDS: -7.13 Total: -136.52 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: 0.21 Total: -34.53 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -78.94 5.20 -73.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525697134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.410 kcal (2) G-P(sol) polarization free energy of solvation -78.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds