Wall clock time and date at job start Tue Mar 31 2020 22:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 117.00111 * 2 1 4 4 O 1.20824 * 120.00082 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00183 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47286 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47354 * 180.02562 * 6 5 3 8 8 C 1.36578 * 119.99475 * 263.72904 * 7 6 5 9 9 H 1.07993 * 120.00343 * 37.70582 * 8 7 6 10 10 C 1.39236 * 119.99603 * 217.70383 * 8 7 6 11 11 N 1.31245 * 120.00145 * 6.20577 * 10 8 7 12 12 Si 1.86804 * 119.99839 * 186.20878 * 10 8 7 13 13 H 1.48492 * 109.47397 * 64.99792 * 12 10 8 14 14 H 1.48503 * 109.46899 * 184.99985 * 12 10 8 15 15 H 1.48493 * 109.46801 * 304.99424 * 12 10 8 16 16 C 1.34770 * 120.00133 * 83.72793 * 7 6 5 17 17 O 1.21689 * 120.00020 * 182.82533 * 16 7 6 18 18 C 1.47056 * 120.00399 * 2.54832 * 16 7 6 19 19 O 1.34552 * 125.78833 * 352.88515 * 18 16 7 20 20 C 1.34625 * 109.47073 * 179.82920 * 19 18 16 21 21 C 1.47001 * 125.79798 * 180.14356 * 20 19 18 22 22 O 1.21553 * 120.00181 * 185.80661 * 21 20 19 23 23 O 1.34847 * 120.00037 * 5.79676 * 21 20 19 24 24 C 1.45202 * 117.00306 * 174.95587 * 23 21 20 25 25 C 1.37708 * 108.41049 * 0.43192 * 20 19 18 26 26 C 1.37744 * 125.79785 * 173.19401 * 18 16 7 27 27 C 1.50701 * 126.57028 * 0.02562 * 26 18 16 28 28 H 1.09002 * 109.47006 * 59.99732 * 1 2 3 29 29 H 1.08999 * 109.46857 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47169 * 299.99868 * 1 2 3 31 31 H 1.09005 * 109.46804 * 60.00062 * 5 3 2 32 32 H 1.08993 * 109.47320 * 300.00275 * 5 3 2 33 33 H 1.09001 * 109.47424 * 59.99645 * 6 5 3 34 34 H 1.09006 * 109.47124 * 299.99924 * 6 5 3 35 35 H 0.97005 * 119.99976 * 184.73377 * 11 10 8 36 36 H 1.08995 * 109.47191 * 300.00950 * 24 23 21 37 37 H 1.08997 * 109.46674 * 60.00340 * 24 23 21 38 38 H 1.08996 * 109.47270 * 180.02562 * 24 23 21 39 39 H 1.08000 * 126.57566 * 179.73454 * 25 20 19 40 40 H 1.08994 * 109.47077 * 90.00272 * 27 26 18 41 41 H 1.09004 * 109.46522 * 210.00236 * 27 26 18 42 42 H 1.08994 * 109.47120 * 329.99846 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8187 0.0011 8 6 6.1383 2.9830 1.1769 9 1 5.7930 2.4869 2.0718 10 6 7.2719 3.7903 1.2217 11 7 7.6220 4.4892 0.1674 12 14 8.2944 3.8786 2.7825 13 1 8.9037 2.5513 3.0510 14 1 9.3677 4.8911 2.6144 15 1 7.4248 4.2639 3.9228 16 6 6.1427 2.7271 -1.1592 17 8 7.3595 2.7391 -1.1542 18 6 5.4139 2.6064 -2.4307 19 8 4.0852 2.4409 -2.5635 20 6 3.7698 2.3737 -3.8705 21 6 2.4179 2.1992 -4.4209 22 8 2.2636 2.0465 -5.6169 23 8 1.3489 2.2084 -3.5990 24 6 0.0385 2.1438 -4.2210 25 6 4.9293 2.4896 -4.6043 26 6 5.9762 2.6377 -3.6878 27 6 7.4387 2.7998 -4.0134 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7809 0.8907 33 1 3.6101 3.2360 0.8910 34 1 3.6108 3.2364 -0.8890 35 1 8.4481 4.9975 0.1749 36 1 -0.0927 3.0006 -4.8818 37 1 -0.0443 1.2233 -4.7989 38 1 -0.7311 2.1592 -3.4493 39 1 5.0144 2.4698 -5.6807 40 1 7.9105 1.8186 -4.0640 41 1 7.5432 3.3032 -4.9746 42 1 7.9199 3.3948 -3.2374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535417756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:00 Heat of formation + Delta-G solvation = -160.396115 kcal Electronic energy + Delta-G solvation = -31204.025596 eV Core-core repulsion = 26732.034668 eV Total energy + Delta-G solvation = -4471.990929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.26474 -40.19630 -40.05879 -38.26522 -36.46125 -36.34716 -34.95718 -33.35957 -32.55614 -30.49485 -30.30335 -27.97063 -27.57308 -27.13786 -25.31169 -24.14253 -23.14208 -21.09318 -20.69687 -20.33828 -19.33913 -17.67707 -17.51563 -17.28502 -16.85374 -16.67294 -16.36622 -16.32657 -15.65413 -15.55080 -14.90684 -14.44791 -14.00903 -13.75518 -13.61063 -13.33730 -13.22767 -13.08371 -12.91453 -12.59762 -12.52160 -12.34657 -12.21221 -12.10719 -12.03857 -11.59784 -11.35826 -11.30454 -11.05241 -10.85560 -10.79323 -10.74309 -10.67674 -10.57169 -10.29852 -10.19171 -9.34788 -9.21072 -8.41223 -8.07830 -7.39660 -6.18471 -4.09714 0.95603 2.33012 2.46716 2.52178 2.91002 3.05649 3.22890 3.25760 3.27602 3.32449 4.10500 4.50664 4.65535 4.93116 5.01732 5.04990 5.09888 5.11820 5.13023 5.16508 5.19635 5.39934 5.42314 5.46935 5.50227 5.65212 5.72253 5.92608 5.95182 6.11196 6.23740 6.25587 6.29736 6.32819 6.56321 6.59437 6.70145 6.90742 7.18818 7.34659 7.74784 7.95742 8.02013 8.73487 8.87904 9.32034 10.01505 10.73536 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.005017 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.790088 B = 5579.313722 C = 7711.018664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.364 6.364 3 C 0.470 3.530 4 O -0.502 6.502 5 C -0.126 4.126 6 C 0.113 3.887 7 N -0.429 5.429 8 C -0.318 4.318 9 H 0.092 0.908 10 C 0.039 3.961 11 N -0.789 5.789 12 Si 0.923 3.077 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.274 1.274 16 C 0.502 3.498 17 O -0.475 6.475 18 C 0.032 3.968 19 O -0.139 6.139 20 C -0.100 4.100 21 C 0.556 3.444 22 O -0.501 6.501 23 O -0.345 6.345 24 C 0.038 3.962 25 C -0.098 4.098 26 C -0.159 4.159 27 C -0.079 4.079 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.269 0.731 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.159 0.841 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.128 -6.055 -4.449 13.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.281 6.281 3 C 0.312 3.688 4 O -0.389 6.389 5 C -0.165 4.165 6 C -0.011 4.011 7 N -0.149 5.149 8 C -0.445 4.445 9 H 0.110 0.890 10 C -0.174 4.174 11 N -0.425 5.425 12 Si 0.750 3.250 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.199 1.199 16 C 0.289 3.711 17 O -0.351 6.351 18 C -0.024 4.024 19 O -0.035 6.035 20 C -0.151 4.151 21 C 0.402 3.598 22 O -0.391 6.391 23 O -0.261 6.261 24 C -0.056 4.056 25 C -0.118 4.118 26 C -0.163 4.163 27 C -0.136 4.136 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.177 0.823 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.928 -5.648 -4.601 13.134 hybrid contribution -0.057 0.102 0.272 0.296 sum -10.985 -5.546 -4.329 13.046 Atomic orbital electron populations 1.23168 0.77179 1.03072 1.02316 1.86528 1.22861 1.34192 1.84553 1.23818 0.92081 0.81055 0.71836 1.90641 1.67178 1.36128 1.44977 1.21925 0.86655 1.02127 1.05756 1.21525 0.83511 0.92272 1.03802 1.43192 1.02868 1.62597 1.06247 1.19317 1.10820 1.27206 0.87199 0.89033 1.25359 0.99124 0.95080 0.97803 1.69975 1.21881 1.22877 1.27764 0.86056 0.79366 0.78174 0.81406 1.20020 1.20927 1.19934 1.16335 0.86326 0.88303 0.80106 1.90697 1.11137 1.50020 1.83207 1.24256 0.78857 1.00992 0.98303 1.84455 1.25069 1.69191 1.24739 1.20879 0.92011 1.19107 0.83064 1.19372 0.83233 0.73065 0.84089 1.90875 1.85813 1.47007 1.15404 1.86721 1.15499 1.83994 1.39853 1.23282 0.80464 1.02445 0.99368 1.21901 0.89620 0.99804 1.00474 1.20620 0.97685 1.07479 0.90467 1.20239 0.89167 1.02315 1.01868 0.92114 0.88648 0.92145 0.88132 0.87467 0.89650 0.90057 0.92031 0.91778 0.91800 0.88053 0.82341 0.91739 0.92591 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.21 10.57 -39.25 -0.41 -5.63 16 3 C 0.47 7.70 7.96 36.00 0.29 7.99 16 4 O -0.50 -9.18 15.73 -18.75 -0.29 -9.48 16 5 C -0.13 -2.14 5.61 -27.89 -0.16 -2.29 16 6 C 0.11 2.27 4.24 -4.04 -0.02 2.25 16 7 N -0.43 -10.18 2.58 -116.19 -0.30 -10.48 16 8 C -0.32 -7.97 9.34 -15.07 -0.14 -8.11 16 9 H 0.09 2.13 7.84 -52.49 -0.41 1.71 16 10 C 0.04 0.99 4.80 -17.43 -0.08 0.91 16 11 N -0.79 -21.66 10.25 55.51 0.57 -21.09 16 12 Si 0.92 19.97 29.56 -169.99 -5.03 14.95 16 13 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 16 C 0.50 12.33 6.83 -12.69 -0.09 12.24 16 17 O -0.48 -12.91 11.59 5.20 0.06 -12.85 16 18 C 0.03 0.69 6.59 -36.19 -0.24 0.45 16 19 O -0.14 -2.74 5.99 3.95 0.02 -2.71 16 20 C -0.10 -1.81 7.21 -36.23 -0.26 -2.07 16 21 C 0.56 9.41 7.94 34.28 0.27 9.68 16 22 O -0.50 -8.73 16.65 -19.30 -0.32 -9.05 16 23 O -0.34 -5.37 10.58 -42.29 -0.45 -5.82 16 24 C 0.04 0.41 10.59 101.05 1.07 1.48 16 25 C -0.10 -1.68 10.60 -39.14 -0.41 -2.10 16 26 C -0.16 -3.06 6.21 -104.17 -0.65 -3.71 16 27 C -0.08 -1.39 9.75 36.01 0.35 -1.04 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.10 1.74 6.94 -51.93 -0.36 1.38 16 32 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.09 1.69 7.95 -51.93 -0.41 1.28 16 34 H 0.08 1.70 5.45 -51.93 -0.28 1.42 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.16 2.30 8.06 -52.49 -0.42 1.88 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.91 6.62 -51.93 -0.34 1.57 16 LS Contribution 367.43 15.07 5.54 5.54 Total: -1.00 -31.55 367.43 -4.78 -36.33 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.17 Total: 3.16 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 1.00 Total: 17.13 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.27 Total: -31.57 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -1.39 Total: -45.54 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.55 -4.78 -36.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535417756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.064 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds