Wall clock time and date at job start Tue Mar 31 2020 22:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31290 * 1 3 3 Si 1.86797 * 120.00174 * 2 1 4 4 H 1.48496 * 109.47512 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47202 * 300.00203 * 3 2 1 6 6 H 1.48502 * 109.47243 * 59.99949 * 3 2 1 7 7 C 1.38987 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00148 * 179.97438 * 7 2 1 9 9 N 1.37319 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.36490 * 126.07025 * 179.97438 * 9 7 2 11 11 C 1.35681 * 107.51165 * 180.02562 * 10 9 7 12 12 N 1.40600 * 126.08411 * 180.02562 * 11 10 9 13 13 C 1.34770 * 119.99903 * 179.97438 * 12 11 10 14 14 O 1.21300 * 120.00192 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.00084 * 179.97438 * 13 12 11 16 16 C 1.50693 * 109.47549 * 180.02562 * 15 13 12 17 17 N 1.30387 * 126.18732 * 90.02259 * 16 15 13 18 18 N 1.28664 * 109.52456 * 180.02562 * 17 16 15 19 19 C 1.31226 * 109.25094 * 0.02562 * 18 17 16 20 20 C 1.47847 * 126.37978 * 179.97438 * 19 18 17 21 21 C 1.39565 * 120.14469 * 179.69575 * 20 19 18 22 22 C 1.37963 * 119.85302 * 179.74547 * 21 20 19 23 23 C 1.38344 * 120.14515 * 0.55310 * 22 21 20 24 24 C 1.38353 * 120.29062 * 359.70399 * 23 22 21 25 25 C 1.37964 * 120.14239 * 0.02562 * 24 23 22 26 26 O 1.34410 * 126.18543 * 270.03288 * 16 15 13 27 27 C 1.40643 * 107.83155 * 0.26210 * 11 10 9 28 28 N 1.30908 * 108.39085 * 359.55596 * 27 11 10 29 29 H 0.97003 * 119.99781 * 359.97438 * 1 2 3 30 30 H 1.07999 * 126.24573 * 0.04327 * 10 9 7 31 31 H 0.96998 * 119.99891 * 0.02562 * 12 11 10 32 32 H 1.09001 * 109.46532 * 60.00339 * 15 13 12 33 33 H 1.09002 * 109.46940 * 300.01109 * 15 13 12 34 34 H 1.07999 * 120.06677 * 0.02562 * 21 20 19 35 35 H 1.08008 * 119.92683 * 180.30278 * 22 21 20 36 36 H 1.08003 * 119.85978 * 179.71804 * 23 22 21 37 37 H 1.08002 * 119.93022 * 180.02562 * 24 23 22 38 38 H 1.07998 * 120.07289 * 180.02562 * 25 24 23 39 39 H 1.08007 * 125.80252 * 179.70145 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3464 0.0006 5 1 1.8882 2.3964 -1.2125 6 1 1.8882 2.3964 1.2125 7 6 2.0078 -1.2037 0.0005 8 1 3.0879 -1.2037 0.0001 9 7 1.3212 -2.3929 0.0005 10 6 1.8748 -3.6405 0.0005 11 6 0.8577 -4.5384 0.0000 12 7 0.9890 -5.9383 0.0003 13 6 -0.1102 -6.7182 0.0001 14 8 -1.2127 -6.2124 -0.0007 15 6 0.0304 -8.2186 -0.0001 16 6 -1.3372 -8.8514 -0.0009 17 7 -2.0352 -9.1748 -1.0536 18 7 -3.1544 -9.6919 -0.6853 19 6 -3.2093 -9.7157 0.6256 20 6 -4.3255 -10.2303 1.4473 21 6 -4.2435 -10.1979 2.8402 22 6 -5.2908 -10.6748 3.6011 23 6 -6.4158 -11.1950 2.9864 24 6 -6.5012 -11.2350 1.6060 25 6 -5.4632 -10.7562 0.8335 26 8 -2.0581 -9.1843 1.0836 27 6 -0.3513 -3.8198 -0.0065 28 7 -0.0716 -2.5410 -0.0001 29 1 -0.4850 0.8401 0.0004 30 1 2.9300 -3.8708 0.0012 31 1 1.8706 -6.3427 0.0013 32 1 0.5759 -8.5324 0.8899 33 1 0.5761 -8.5322 -0.8901 34 1 -3.3640 -9.7961 3.3212 35 1 -5.2307 -10.6458 4.6791 36 1 -7.2310 -11.5713 3.5865 37 1 -7.3823 -11.6419 1.1322 38 1 -5.5313 -10.7876 -0.2438 39 1 -1.3419 -4.2500 -0.0131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544158584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:44 Heat of formation + Delta-G solvation = 121.332246 kcal Electronic energy + Delta-G solvation = -26784.261171 eV Core-core repulsion = 22696.381323 eV Total energy + Delta-G solvation = -4087.879848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.21350 -40.01503 -39.44061 -38.70166 -36.23771 -34.36133 -33.62162 -33.20445 -31.69707 -31.40174 -30.26349 -28.73988 -27.44030 -24.93777 -24.53552 -23.54460 -22.33425 -21.89774 -21.15716 -20.44221 -19.50112 -18.15373 -17.87015 -17.34082 -16.79977 -16.31666 -16.14439 -15.71317 -15.47622 -15.16395 -15.05959 -14.43863 -14.27027 -13.90085 -13.85442 -13.53368 -13.37513 -13.26101 -12.92718 -12.49110 -12.44559 -12.01562 -11.90445 -11.71596 -11.55076 -11.48297 -11.29812 -11.03199 -10.98106 -10.52976 -10.47808 -10.26979 -9.41932 -9.39823 -9.22259 -8.85448 -8.78291 -8.10057 -6.77270 -6.58614 -4.26501 0.21893 0.96841 1.44081 1.99969 2.36216 2.66361 2.97655 3.03306 3.09620 3.35318 3.41740 3.61914 3.63104 3.84440 4.12106 4.34828 4.47184 4.52856 4.61905 4.70033 4.75671 4.92341 4.95963 4.99400 5.04382 5.12450 5.24352 5.28182 5.45161 5.49907 5.61677 5.99183 6.01778 6.05937 6.19635 6.39057 6.45108 6.81410 6.90838 7.02375 7.18991 7.82046 8.05014 8.19101 8.21661 8.53610 8.73333 9.34005 9.62884 10.37339 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021397 B = 0.001964 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.310480 B =14253.772363 C =14961.429134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.045 3.955 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.118 0.882 9 N -0.141 5.141 10 C -0.081 4.081 11 C -0.063 4.063 12 N -0.616 5.616 13 C 0.501 3.499 14 O -0.525 6.525 15 C -0.044 4.044 16 C 0.198 3.802 17 N -0.271 5.271 18 N -0.272 5.272 19 C 0.204 3.796 20 C -0.020 4.020 21 C -0.084 4.084 22 C -0.121 4.121 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.068 4.068 26 O -0.214 6.214 27 C -0.031 4.031 28 N -0.260 5.260 29 H 0.275 0.725 30 H 0.147 0.853 31 H 0.400 0.600 32 H 0.126 0.874 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.140 0.860 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 -21.841 6.033 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.091 4.909 10 C -0.232 4.232 11 C -0.169 4.169 12 N -0.258 5.258 13 C 0.284 3.716 14 O -0.402 6.402 15 C -0.086 4.086 16 C -0.013 4.013 17 N -0.118 5.118 18 N -0.120 5.120 19 C -0.004 4.004 20 C -0.022 4.022 21 C -0.104 4.104 22 C -0.139 4.139 23 C -0.117 4.117 24 C -0.139 4.139 25 C -0.087 4.087 26 O -0.093 6.093 27 C -0.206 4.206 28 N -0.091 5.091 29 H 0.085 0.915 30 H 0.164 0.836 31 H 0.233 0.767 32 H 0.144 0.856 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.158 0.842 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.760 -20.268 4.768 21.603 hybrid contribution 1.684 -0.103 1.193 2.066 sum -4.076 -20.371 5.961 21.613 Atomic orbital electron populations 1.70226 1.06157 1.27959 1.35155 1.25662 0.95721 1.00346 0.95469 0.85752 0.79616 0.80207 0.78504 1.18656 1.19883 1.19905 1.19934 0.91697 0.80500 1.53374 0.86484 1.44578 1.04061 1.03355 1.38885 1.21245 0.96816 0.85315 1.19855 1.17220 0.94370 0.80877 1.24421 1.42306 1.07831 1.04681 1.71011 1.19714 0.85119 0.87181 0.79560 1.90681 1.25723 1.74432 1.49338 1.20110 0.87229 0.93293 1.07930 1.26930 0.96776 0.98164 0.79405 1.74390 0.99338 1.12985 1.25064 1.74675 1.12900 1.16182 1.08208 1.25365 0.86618 0.97753 0.90625 1.17250 0.90392 1.02990 0.91531 1.21314 0.99525 0.97599 0.91927 1.21109 0.93387 0.99036 1.00363 1.21417 0.97822 0.97478 0.94940 1.21135 0.98702 1.00254 0.93829 1.21225 0.91202 0.95099 1.01213 1.84790 1.26247 1.60323 1.37912 1.24101 0.98009 0.90793 1.07728 1.78278 0.90119 1.15014 1.25709 0.91452 0.83559 0.76672 0.85571 0.84174 0.84936 0.84981 0.85286 0.84828 0.84180 0.80874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.53 11.81 55.49 0.66 -20.87 16 2 C 0.05 1.17 5.50 -17.51 -0.10 1.07 16 3 Si 0.94 18.84 29.55 -169.99 -5.02 13.81 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.32 -8.47 10.25 -14.82 -0.15 -8.62 16 8 H 0.12 2.73 7.83 -52.48 -0.41 2.32 16 9 N -0.14 -3.85 3.74 -11.41 -0.04 -3.90 16 10 C -0.08 -1.86 11.49 -16.39 -0.19 -2.05 16 11 C -0.06 -1.43 6.90 -83.84 -0.58 -2.01 16 12 N -0.62 -10.10 5.47 -10.00 -0.05 -10.15 16 13 C 0.50 8.29 7.79 -10.99 -0.09 8.21 16 14 O -0.53 -11.46 13.19 5.54 0.07 -11.39 16 15 C -0.04 -0.48 6.33 -29.04 -0.18 -0.67 16 16 C 0.20 2.90 6.97 -12.90 -0.09 2.81 16 17 N -0.27 -4.55 12.22 32.58 0.40 -4.15 16 18 N -0.27 -4.43 11.92 32.07 0.38 -4.05 16 19 C 0.20 2.95 7.99 -13.88 -0.11 2.84 16 20 C -0.02 -0.23 5.87 -104.98 -0.62 -0.84 16 21 C -0.08 -0.80 9.73 -39.19 -0.38 -1.18 16 22 C -0.12 -0.88 10.03 -39.64 -0.40 -1.28 16 23 C -0.10 -0.64 10.04 -39.50 -0.40 -1.03 16 24 C -0.12 -0.87 10.03 -39.64 -0.40 -1.27 16 25 C -0.07 -0.66 9.70 -39.19 -0.38 -1.04 16 26 O -0.21 -3.13 10.67 4.01 0.04 -3.08 16 27 C -0.03 -0.81 10.85 -17.04 -0.18 -1.00 16 28 N -0.26 -7.60 10.40 30.80 0.32 -7.28 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 30 H 0.15 2.74 8.06 -52.49 -0.42 2.32 16 31 H 0.40 4.57 8.83 -40.82 -0.36 4.21 16 32 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.13 1.17 7.94 -52.49 -0.42 0.75 16 35 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 36 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.14 1.32 7.87 -52.49 -0.41 0.90 16 39 H 0.17 4.63 5.92 -52.48 -0.31 4.32 16 LS Contribution 354.95 15.07 5.35 5.35 Total: -1.00 -37.66 354.95 -5.72 -43.38 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -3.58 Total: 8.39 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -4.24 Total: -6.06 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 1.66 Total: -50.40 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.12 Total: -14.47 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.66 -5.72 -43.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544158584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.713 kcal (2) G-P(sol) polarization free energy of solvation -37.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds