Wall clock time and date at job start Tue Mar 31 2020 22:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31290 * 1 3 3 Si 1.86797 * 120.00174 * 2 1 4 4 H 1.48496 * 109.47512 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47202 * 300.00203 * 3 2 1 6 6 H 1.48502 * 109.47243 * 59.99949 * 3 2 1 7 7 C 1.38987 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00148 * 179.97438 * 7 2 1 9 9 N 1.37319 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.36490 * 126.07025 * 179.97438 * 9 7 2 11 11 C 1.35681 * 107.51165 * 180.02562 * 10 9 7 12 12 N 1.40600 * 126.08411 * 180.02562 * 11 10 9 13 13 C 1.34770 * 119.99903 * 179.97438 * 12 11 10 14 14 O 1.21300 * 120.00192 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.00084 * 179.97438 * 13 12 11 16 16 C 1.50693 * 109.47549 * 180.02562 * 15 13 12 17 17 N 1.30387 * 126.18732 * 90.02259 * 16 15 13 18 18 N 1.28664 * 109.52456 * 180.02562 * 17 16 15 19 19 C 1.31226 * 109.25094 * 0.02562 * 18 17 16 20 20 C 1.47847 * 126.37978 * 179.97438 * 19 18 17 21 21 C 1.39565 * 120.14469 * 179.69575 * 20 19 18 22 22 C 1.37963 * 119.85302 * 179.74547 * 21 20 19 23 23 C 1.38344 * 120.14515 * 0.55310 * 22 21 20 24 24 C 1.38353 * 120.29062 * 359.70399 * 23 22 21 25 25 C 1.37964 * 120.14239 * 0.02562 * 24 23 22 26 26 O 1.34410 * 126.18543 * 270.03288 * 16 15 13 27 27 C 1.40643 * 107.83155 * 0.26210 * 11 10 9 28 28 N 1.30908 * 108.39085 * 359.55596 * 27 11 10 29 29 H 0.97003 * 119.99781 * 359.97438 * 1 2 3 30 30 H 1.07999 * 126.24573 * 0.04327 * 10 9 7 31 31 H 0.96998 * 119.99891 * 0.02562 * 12 11 10 32 32 H 1.09001 * 109.46532 * 60.00339 * 15 13 12 33 33 H 1.09002 * 109.46940 * 300.01109 * 15 13 12 34 34 H 1.07999 * 120.06677 * 0.02562 * 21 20 19 35 35 H 1.08008 * 119.92683 * 180.30278 * 22 21 20 36 36 H 1.08003 * 119.85978 * 179.71804 * 23 22 21 37 37 H 1.08002 * 119.93022 * 180.02562 * 24 23 22 38 38 H 1.07998 * 120.07289 * 180.02562 * 25 24 23 39 39 H 1.08007 * 125.80252 * 179.70145 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3464 0.0006 5 1 1.8882 2.3964 -1.2125 6 1 1.8882 2.3964 1.2125 7 6 2.0078 -1.2037 0.0005 8 1 3.0879 -1.2037 0.0001 9 7 1.3212 -2.3929 0.0005 10 6 1.8748 -3.6405 0.0005 11 6 0.8577 -4.5384 0.0000 12 7 0.9890 -5.9383 0.0003 13 6 -0.1102 -6.7182 0.0001 14 8 -1.2127 -6.2124 -0.0007 15 6 0.0304 -8.2186 -0.0001 16 6 -1.3372 -8.8514 -0.0009 17 7 -2.0352 -9.1748 -1.0536 18 7 -3.1544 -9.6919 -0.6853 19 6 -3.2093 -9.7157 0.6256 20 6 -4.3255 -10.2303 1.4473 21 6 -4.2435 -10.1979 2.8402 22 6 -5.2908 -10.6748 3.6011 23 6 -6.4158 -11.1950 2.9864 24 6 -6.5012 -11.2350 1.6060 25 6 -5.4632 -10.7562 0.8335 26 8 -2.0581 -9.1843 1.0836 27 6 -0.3513 -3.8198 -0.0065 28 7 -0.0716 -2.5410 -0.0001 29 1 -0.4850 0.8401 0.0004 30 1 2.9300 -3.8708 0.0012 31 1 1.8706 -6.3427 0.0013 32 1 0.5759 -8.5324 0.8899 33 1 0.5761 -8.5322 -0.8901 34 1 -3.3640 -9.7961 3.3212 35 1 -5.2307 -10.6458 4.6791 36 1 -7.2310 -11.5713 3.5865 37 1 -7.3823 -11.6419 1.1322 38 1 -5.5313 -10.7876 -0.2438 39 1 -1.3419 -4.2500 -0.0131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544158584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:43 Heat of formation + Delta-G solvation = 90.611418 kcal Electronic energy + Delta-G solvation = -26785.593327 eV Core-core repulsion = 22696.381323 eV Total energy + Delta-G solvation = -4089.212003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.31535 -41.74993 -40.34921 -40.06217 -37.36723 -36.01403 -35.04213 -34.56152 -32.65423 -32.15318 -32.03443 -30.07588 -28.94651 -26.78047 -25.50238 -24.57805 -23.22463 -22.86881 -22.73931 -21.97724 -21.25195 -19.46048 -19.02332 -18.71000 -17.85627 -17.58525 -17.36582 -17.10027 -16.86691 -16.36610 -16.11636 -15.73178 -15.32009 -15.21114 -14.93715 -14.86482 -14.78519 -14.46779 -13.99776 -13.61264 -13.50808 -13.49861 -13.31907 -13.10602 -12.93528 -12.86182 -12.60688 -12.24589 -12.02875 -11.99080 -11.91243 -11.46674 -11.05753 -10.90363 -10.78637 -10.12165 -10.03176 -9.64527 -8.55912 -8.47853 -6.25659 -0.65053 0.34199 0.48617 1.00581 1.17074 1.29942 1.39874 1.45650 1.58999 1.84081 2.03285 2.25289 2.47913 2.60049 2.74673 2.89096 3.08746 3.16911 3.65062 3.76820 3.91203 3.98897 4.08833 4.10126 4.26456 4.39272 4.40984 4.43929 4.50262 4.54580 4.59881 4.80542 4.99667 5.01556 5.05401 5.28636 5.32829 5.38596 5.41137 5.45660 5.86824 5.95326 6.28471 6.66435 6.72435 7.06729 7.31542 7.46481 7.66785 8.51766 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021397 B = 0.001964 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.310480 B =14253.772363 C =14961.429134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.010 4.010 3 Si 1.020 2.980 4 H -0.238 1.238 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.352 4.352 8 H 0.145 0.855 9 N -0.169 5.169 10 C -0.073 4.073 11 C -0.045 4.045 12 N -0.602 5.602 13 C 0.500 3.500 14 O -0.582 6.582 15 C -0.028 4.028 16 C 0.190 3.810 17 N -0.303 5.303 18 N -0.307 5.307 19 C 0.210 3.790 20 C -0.055 4.055 21 C -0.093 4.093 22 C -0.120 4.120 23 C -0.086 4.086 24 C -0.119 4.119 25 C -0.080 4.080 26 O -0.220 6.220 27 C -0.062 4.062 28 N -0.313 5.313 29 H 0.275 0.725 30 H 0.195 0.805 31 H 0.429 0.571 32 H 0.178 0.822 33 H 0.181 0.819 34 H 0.133 0.867 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.132 0.868 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.169 -23.694 7.540 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.160 1.160 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.483 4.483 8 H 0.162 0.838 9 N 0.062 4.938 10 C -0.224 4.224 11 C -0.151 4.151 12 N -0.248 5.248 13 C 0.287 3.713 14 O -0.462 6.462 15 C -0.068 4.068 16 C -0.021 4.021 17 N -0.149 5.149 18 N -0.154 5.154 19 C 0.002 3.998 20 C -0.057 4.057 21 C -0.113 4.113 22 C -0.138 4.138 23 C -0.104 4.104 24 C -0.137 4.137 25 C -0.100 4.100 26 O -0.100 6.100 27 C -0.237 4.237 28 N -0.145 5.145 29 H 0.085 0.915 30 H 0.212 0.788 31 H 0.268 0.732 32 H 0.196 0.804 33 H 0.199 0.801 34 H 0.151 0.849 35 H 0.178 0.822 36 H 0.183 0.817 37 H 0.179 0.821 38 H 0.150 0.850 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.891 -22.194 6.258 23.385 hybrid contribution 0.986 0.244 0.801 1.293 sum -2.905 -21.950 7.058 23.239 Atomic orbital electron populations 1.70417 1.08539 1.28992 1.37574 1.26922 0.96460 1.04518 0.94185 0.84524 0.79191 0.74334 0.78078 1.16001 1.19982 1.19886 1.20692 0.93033 0.80786 1.53779 0.83804 1.44875 1.03528 1.05020 1.40361 1.22057 0.98964 0.83910 1.17424 1.17274 0.92554 0.83753 1.21550 1.42180 1.09674 1.02134 1.70813 1.20711 0.83967 0.89498 0.77164 1.90681 1.28102 1.76079 1.51361 1.20333 0.86043 0.88039 1.12388 1.27613 0.97702 0.97834 0.78979 1.74283 1.00010 1.14163 1.26492 1.74590 1.13416 1.18046 1.09351 1.26040 0.86901 0.96284 0.90562 1.17520 0.90447 1.05414 0.92320 1.21467 1.00553 0.98019 0.91244 1.21486 0.92723 0.97927 1.01665 1.21890 0.98189 0.95486 0.94857 1.21494 0.98605 0.99268 0.94342 1.21344 0.91644 0.95679 1.01288 1.84795 1.26479 1.60596 1.38086 1.24094 0.99012 0.91141 1.09491 1.78169 0.92283 1.16560 1.27522 0.91496 0.78826 0.73249 0.80422 0.80138 0.84943 0.82231 0.81731 0.82095 0.84995 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.40 11.81 21.66 0.26 -48.14 16 2 C -0.01 -0.50 5.50 84.95 0.47 -0.03 16 3 Si 1.02 38.61 29.55 68.60 2.03 40.63 16 4 H -0.24 -7.92 7.11 99.48 0.71 -7.21 16 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.35 -18.46 10.25 84.01 0.86 -17.60 16 8 H 0.14 6.45 7.83 -2.91 -0.02 6.43 16 9 N -0.17 -9.31 3.74 -190.01 -0.71 -10.02 16 10 C -0.07 -3.25 11.49 83.38 0.96 -2.29 16 11 C -0.05 -2.00 6.90 37.73 0.26 -1.74 16 12 N -0.60 -18.38 5.47 -303.93 -1.66 -20.04 16 13 C 0.50 15.96 7.79 87.66 0.68 16.64 16 14 O -0.58 -26.15 13.19 -3.09 -0.04 -26.19 16 15 C -0.03 -0.53 6.33 29.10 0.18 -0.34 16 16 C 0.19 5.51 6.97 88.32 0.62 6.12 16 17 N -0.30 -10.46 12.22 -165.33 -2.02 -12.48 16 18 N -0.31 -10.56 11.92 -166.30 -1.98 -12.54 16 19 C 0.21 6.34 7.99 87.33 0.70 7.04 16 20 C -0.06 -1.30 5.87 -20.10 -0.12 -1.42 16 21 C -0.09 -1.73 9.73 22.52 0.22 -1.51 16 22 C -0.12 -1.47 10.03 22.23 0.22 -1.25 16 23 C -0.09 -0.85 10.04 22.32 0.22 -0.62 16 24 C -0.12 -1.49 10.03 22.23 0.22 -1.27 16 25 C -0.08 -1.56 9.70 22.52 0.22 -1.34 16 26 O -0.22 -6.52 10.67 -8.55 -0.09 -6.61 16 27 C -0.06 -3.44 10.85 85.42 0.93 -2.51 16 28 N -0.31 -19.15 10.40 -56.47 -0.59 -19.73 16 29 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.19 6.48 8.06 -2.91 -0.02 6.46 16 31 H 0.43 8.00 8.83 -92.71 -0.82 7.18 16 32 H 0.18 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.18 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.13 2.33 7.94 -2.91 -0.02 2.31 16 35 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 36 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 37 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 38 H 0.13 2.67 7.87 -2.91 -0.02 2.65 16 39 H 0.16 9.09 5.92 -2.91 -0.02 9.07 16 Total: -1.00 -91.50 354.95 2.15 -89.35 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.31 Total: 27.91 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 6.64 Total: -2.13 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -6.71 Total: -122.96 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.13 Total: -32.81 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.63 kcal Total: -91.50 2.15 -89.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544158584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.961 kcal (2) G-P(sol) polarization free energy of solvation -91.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds