Wall clock time and date at job start Tue Mar 31 2020 22:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37839 * 120.00641 * 2 1 4 4 C 1.40199 * 118.71965 * 180.02562 * 3 2 1 5 5 O 1.22150 * 120.61133 * 179.97438 * 4 3 2 6 6 N 1.34804 * 118.77173 * 0.02562 * 4 3 2 7 7 N 1.40044 * 132.37868 * 180.33408 * 6 4 3 8 8 C 1.30359 * 108.31359 * 180.10551 * 7 6 4 9 9 N 1.38633 * 125.48208 * 179.85476 * 8 7 6 10 10 C 1.34775 * 120.00303 * 359.41704 * 9 8 7 11 11 O 1.21595 * 119.99561 * 0.28261 * 10 9 8 12 12 C 1.47563 * 120.00161 * 180.27487 * 10 9 8 13 13 C 1.40043 * 119.89992 * 359.73172 * 12 10 9 14 14 C 1.36293 * 120.10540 * 179.71514 * 13 12 10 15 15 C 1.40900 * 119.89525 * 0.55510 * 14 13 12 16 16 C 1.41076 * 120.10450 * 179.69890 * 15 14 13 17 17 H 1.08005 * 120.00066 * 204.66211 * 16 15 14 18 18 C 1.40231 * 120.00145 * 24.65994 * 16 15 14 19 19 N 1.30647 * 120.00061 * 17.86923 * 18 16 15 20 20 Si 1.86797 * 120.00182 * 197.87200 * 18 16 15 21 21 H 1.48503 * 109.47316 * 89.99700 * 20 18 16 22 22 H 1.48503 * 109.47225 * 210.00035 * 20 18 16 23 23 H 1.48502 * 109.47291 * 329.99783 * 20 18 16 24 24 C 1.40907 * 119.79543 * 359.71869 * 15 14 13 25 25 C 1.36291 * 119.89571 * 0.02562 * 24 15 14 26 26 N 1.37077 * 109.03202 * 359.59178 * 8 7 6 27 27 H 0.97004 * 125.90521 * 180.26684 * 26 8 7 28 28 C 1.35748 * 120.16526 * 0.02562 * 6 4 3 29 29 N 1.32316 * 121.00418 * 0.02562 * 28 6 4 30 30 H 1.09005 * 109.47258 * 90.00203 * 1 2 3 31 31 H 1.09004 * 109.46960 * 209.99869 * 1 2 3 32 32 H 1.09001 * 109.47426 * 329.99598 * 1 2 3 33 33 H 1.08004 * 120.63937 * 0.02562 * 3 2 1 34 34 H 0.97002 * 119.99524 * 179.69617 * 9 8 7 35 35 H 1.08010 * 119.94704 * 359.97438 * 13 12 10 36 36 H 1.08007 * 120.05674 * 180.25314 * 14 13 12 37 37 H 0.97000 * 120.00324 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.05215 * 179.97438 * 24 15 14 39 39 H 1.08001 * 119.95205 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1936 0.0000 4 6 3.5980 1.1622 -0.0005 5 8 4.2434 2.1992 -0.0010 6 7 4.2201 -0.0337 -0.0016 7 7 5.5735 -0.3937 0.0037 8 6 5.6513 -1.6949 -0.0026 9 7 6.8262 -2.4308 -0.0030 10 6 8.0169 -1.7995 -0.0085 11 8 8.0606 -0.5843 -0.0078 12 6 9.2674 -2.5828 -0.0151 13 6 9.2146 -3.9822 -0.0100 14 6 10.3669 -4.7099 -0.0220 15 6 11.6129 -4.0521 -0.0276 16 6 12.8085 -4.8009 -0.0336 17 1 13.7192 -4.3674 0.3526 18 6 12.8144 -6.1083 -0.5408 19 7 11.8415 -6.5140 -1.3125 20 14 14.2135 -7.2698 -0.1129 21 1 13.8755 -8.0170 1.1250 22 1 14.4203 -8.2278 -1.2286 23 1 15.4570 -6.4878 0.1049 24 6 11.6611 -2.6438 -0.0269 25 6 10.5035 -1.9245 -0.0202 26 7 4.3844 -2.2185 -0.0027 27 1 4.1588 -3.1619 -0.0031 28 6 3.4938 -1.1805 -0.0026 29 7 2.1710 -1.1494 -0.0031 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6669 2.1350 0.0004 34 1 6.7912 -3.4002 -0.0035 35 1 8.2590 -4.4857 -0.0008 36 1 10.3252 -5.7892 -0.0222 37 1 11.8454 -7.4184 -1.6631 38 1 12.6139 -2.1353 -0.0308 39 1 10.5394 -0.8450 -0.0192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544983289.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:53 Heat of formation + Delta-G solvation = 82.928763 kcal Electronic energy + Delta-G solvation = -27224.222477 eV Core-core repulsion = 23134.677328 eV Total energy + Delta-G solvation = -4089.545148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.37018 -40.24700 -39.12022 -37.61553 -37.36658 -35.15519 -34.14683 -34.03892 -32.28901 -30.61730 -30.33388 -29.71358 -28.28212 -26.46157 -24.72411 -23.40417 -22.62720 -21.88461 -21.19954 -20.34498 -19.36363 -18.47151 -17.78442 -17.66233 -17.35809 -17.31452 -16.47965 -15.67432 -15.17704 -15.14372 -14.67320 -14.37818 -14.24507 -14.00514 -13.95730 -13.51598 -13.32746 -13.03018 -12.69878 -12.41009 -12.37938 -12.20407 -11.85716 -11.62648 -11.46831 -11.41949 -11.16880 -10.91746 -10.70128 -10.31556 -10.30293 -10.09331 -9.80530 -9.60775 -9.47292 -9.22136 -8.11219 -7.99482 -7.82329 -7.28137 -4.85156 0.49337 1.22451 1.24380 1.66647 1.79217 2.13188 2.76811 2.80877 2.82742 2.85282 3.20574 3.48811 3.52352 3.57538 3.81391 3.93455 4.28575 4.49487 4.64146 5.08728 5.21596 5.26731 5.30721 5.35945 5.52238 5.54095 5.65073 5.76415 5.96669 6.07375 6.42434 6.47461 6.54224 6.58599 6.68570 6.78301 6.87622 7.17411 7.27614 7.43639 7.48824 7.61483 7.64795 7.82188 7.92540 8.14365 8.37876 8.44130 8.49001 9.63008 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031325 B = 0.002071 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.650075 B =13514.786338 C =14323.800136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.223 3.777 3 C -0.334 4.334 4 C 0.549 3.451 5 O -0.517 6.517 6 N -0.368 5.368 7 N -0.249 5.249 8 C 0.528 3.472 9 N -0.634 5.634 10 C 0.567 3.433 11 O -0.499 6.499 12 C -0.288 4.288 13 C -0.062 4.062 14 C -0.175 4.175 15 C 0.129 3.871 16 C -0.428 4.428 17 H 0.089 0.911 18 C 0.072 3.928 19 N -0.763 5.763 20 Si 0.917 3.083 21 H -0.263 1.263 22 H -0.273 1.273 23 H -0.257 1.257 24 C -0.236 4.236 25 C -0.012 4.012 26 N -0.613 5.613 27 H 0.449 0.551 28 C 0.555 3.445 29 N -0.559 5.559 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.163 0.837 34 H 0.424 0.576 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.290 0.710 38 H 0.103 0.897 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.059 -2.346 1.634 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.095 3.905 3 C -0.363 4.363 4 C 0.352 3.648 5 O -0.391 6.391 6 N -0.176 5.176 7 N -0.080 5.080 8 C 0.162 3.838 9 N -0.292 5.292 10 C 0.363 3.637 11 O -0.370 6.370 12 C -0.293 4.293 13 C -0.082 4.082 14 C -0.194 4.194 15 C 0.125 3.875 16 C -0.455 4.455 17 H 0.107 0.893 18 C -0.151 4.151 19 N -0.385 5.385 20 Si 0.740 3.260 21 H -0.187 1.187 22 H -0.198 1.198 23 H -0.181 1.181 24 C -0.255 4.255 25 C -0.031 4.031 26 N -0.247 5.247 27 H 0.293 0.707 28 C 0.199 3.801 29 N -0.296 5.296 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.181 0.819 34 H 0.265 0.735 35 H 0.106 0.894 36 H 0.141 0.859 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.403 -0.601 1.480 15.486 hybrid contribution 0.447 -1.827 0.000 1.881 sum -14.956 -2.428 1.480 15.224 Atomic orbital electron populations 1.20749 0.87044 1.04166 1.03848 1.21182 0.96818 0.86290 0.86163 1.22458 0.90308 1.00812 1.22730 1.16962 0.88372 0.80111 0.79345 1.91010 1.66971 1.29764 1.51354 1.49038 1.04891 1.08517 1.55196 1.78826 0.92272 1.05930 1.31008 1.20650 0.80618 0.87964 0.94521 1.43490 1.00585 1.10628 1.74461 1.19078 0.81624 0.87936 0.75022 1.90871 1.85204 1.13509 1.47441 1.18454 0.89652 0.92571 1.28653 1.20405 0.97062 0.92085 0.98616 1.20975 0.91365 0.99791 1.07263 1.17844 0.93249 0.91306 0.85076 1.19988 0.96691 0.96784 1.32048 0.89265 1.26180 0.97607 0.98921 0.92355 1.69721 1.30307 1.19060 1.19411 0.86134 0.80981 0.79453 0.79401 1.18735 1.19828 1.18075 1.20727 0.96428 0.93964 1.14383 1.20367 0.91147 0.98315 0.93304 1.42106 1.02683 1.09895 1.70062 0.70731 1.19900 0.87631 0.81219 0.91372 1.67561 0.99156 1.29977 1.32907 0.89396 0.89882 0.89665 0.81924 0.73537 0.89365 0.85931 0.89855 0.87927 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 10.19 36.01 0.37 -0.23 16 2 C 0.22 2.35 6.80 -82.34 -0.56 1.79 16 3 C -0.33 -4.26 9.74 -38.99 -0.38 -4.64 16 4 C 0.55 9.75 7.71 -15.51 -0.12 9.63 16 5 O -0.52 -11.33 17.96 4.78 0.09 -11.24 16 6 N -0.37 -6.29 3.80 -15.79 -0.06 -6.35 16 7 N -0.25 -4.73 10.73 30.30 0.33 -4.41 16 8 C 0.53 7.66 8.86 -318.99 -2.83 4.83 16 9 N -0.63 -8.90 5.34 -13.45 -0.07 -8.97 16 10 C 0.57 10.78 7.72 -12.46 -0.10 10.68 16 11 O -0.50 -11.40 14.98 5.28 0.08 -11.32 16 12 C -0.29 -5.76 5.89 -104.74 -0.62 -6.38 16 13 C -0.06 -1.17 9.47 -39.61 -0.38 -1.55 16 14 C -0.17 -3.76 8.63 -39.27 -0.34 -4.10 16 15 C 0.13 2.96 5.58 -106.80 -0.60 2.36 16 16 C -0.43 -9.67 9.04 -37.76 -0.34 -10.01 16 17 H 0.09 1.93 7.91 -52.48 -0.42 1.51 16 18 C 0.07 1.52 5.14 -17.31 -0.09 1.43 16 19 N -0.76 -16.49 10.95 55.56 0.61 -15.88 16 20 Si 0.92 15.72 29.60 -169.99 -5.03 10.69 16 21 H -0.26 -4.46 7.11 56.52 0.40 -4.06 16 22 H -0.27 -4.61 7.11 56.52 0.40 -4.21 16 23 H -0.26 -4.42 7.11 56.52 0.40 -4.01 16 24 C -0.24 -5.17 9.73 -39.27 -0.38 -5.55 16 25 C -0.01 -0.26 9.52 -39.60 -0.38 -0.64 16 26 N -0.61 -6.33 6.16 -14.02 -0.09 -6.41 16 27 H 0.45 2.51 8.96 -40.82 -0.37 2.15 16 28 C 0.56 7.29 9.02 -321.04 -2.90 4.39 16 29 N -0.56 -6.52 10.37 -9.94 -0.10 -6.62 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.42 4.23 6.82 -40.82 -0.28 3.96 16 35 H 0.09 1.26 6.37 -52.48 -0.33 0.92 16 36 H 0.12 2.67 6.16 -52.48 -0.32 2.34 16 37 H 0.29 5.60 8.29 -40.82 -0.34 5.26 16 38 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.11 2.21 7.63 -52.49 -0.40 1.81 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -32.66 346.90 -12.02 -44.68 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -3.36 Total: 8.58 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -9.63 Total: 2.03 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.61 Total: -48.64 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.16 Total: -22.56 kcal Atomic # 14 Polarization: 15.72 SS G_CDS: -5.03 Total: 10.69 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.66 -12.02 -44.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544983289.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.605 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds