Wall clock time and date at job start Tue Mar 31 2020 22:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37839 * 120.00641 * 2 1 4 4 C 1.40199 * 118.71965 * 180.02562 * 3 2 1 5 5 O 1.22150 * 120.61133 * 179.97438 * 4 3 2 6 6 N 1.34804 * 118.77173 * 0.02562 * 4 3 2 7 7 N 1.40044 * 132.37868 * 180.33408 * 6 4 3 8 8 C 1.30359 * 108.31359 * 180.10551 * 7 6 4 9 9 N 1.38633 * 125.48208 * 179.85476 * 8 7 6 10 10 C 1.34775 * 120.00303 * 359.41704 * 9 8 7 11 11 O 1.21595 * 119.99561 * 0.28261 * 10 9 8 12 12 C 1.47563 * 120.00161 * 180.27487 * 10 9 8 13 13 C 1.40043 * 119.89992 * 359.73172 * 12 10 9 14 14 C 1.36293 * 120.10540 * 179.71514 * 13 12 10 15 15 C 1.40900 * 119.89525 * 0.55510 * 14 13 12 16 16 C 1.41076 * 120.10450 * 179.69890 * 15 14 13 17 17 H 1.08005 * 120.00066 * 204.66211 * 16 15 14 18 18 C 1.40231 * 120.00145 * 24.65994 * 16 15 14 19 19 N 1.30647 * 120.00061 * 17.86923 * 18 16 15 20 20 Si 1.86797 * 120.00182 * 197.87200 * 18 16 15 21 21 H 1.48503 * 109.47316 * 89.99700 * 20 18 16 22 22 H 1.48503 * 109.47225 * 210.00035 * 20 18 16 23 23 H 1.48502 * 109.47291 * 329.99783 * 20 18 16 24 24 C 1.40907 * 119.79543 * 359.71869 * 15 14 13 25 25 C 1.36291 * 119.89571 * 0.02562 * 24 15 14 26 26 N 1.37077 * 109.03202 * 359.59178 * 8 7 6 27 27 H 0.97004 * 125.90521 * 180.26684 * 26 8 7 28 28 C 1.35748 * 120.16526 * 0.02562 * 6 4 3 29 29 N 1.32316 * 121.00418 * 0.02562 * 28 6 4 30 30 H 1.09005 * 109.47258 * 90.00203 * 1 2 3 31 31 H 1.09004 * 109.46960 * 209.99869 * 1 2 3 32 32 H 1.09001 * 109.47426 * 329.99598 * 1 2 3 33 33 H 1.08004 * 120.63937 * 0.02562 * 3 2 1 34 34 H 0.97002 * 119.99524 * 179.69617 * 9 8 7 35 35 H 1.08010 * 119.94704 * 359.97438 * 13 12 10 36 36 H 1.08007 * 120.05674 * 180.25314 * 14 13 12 37 37 H 0.97000 * 120.00324 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.05215 * 179.97438 * 24 15 14 39 39 H 1.08001 * 119.95205 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1936 0.0000 4 6 3.5980 1.1622 -0.0005 5 8 4.2434 2.1992 -0.0010 6 7 4.2201 -0.0337 -0.0016 7 7 5.5735 -0.3937 0.0037 8 6 5.6513 -1.6949 -0.0026 9 7 6.8262 -2.4308 -0.0030 10 6 8.0169 -1.7995 -0.0085 11 8 8.0606 -0.5843 -0.0078 12 6 9.2674 -2.5828 -0.0151 13 6 9.2146 -3.9822 -0.0100 14 6 10.3669 -4.7099 -0.0220 15 6 11.6129 -4.0521 -0.0276 16 6 12.8085 -4.8009 -0.0336 17 1 13.7192 -4.3674 0.3526 18 6 12.8144 -6.1083 -0.5408 19 7 11.8415 -6.5140 -1.3125 20 14 14.2135 -7.2698 -0.1129 21 1 13.8755 -8.0170 1.1250 22 1 14.4203 -8.2278 -1.2286 23 1 15.4570 -6.4878 0.1049 24 6 11.6611 -2.6438 -0.0269 25 6 10.5035 -1.9245 -0.0202 26 7 4.3844 -2.2185 -0.0027 27 1 4.1588 -3.1619 -0.0031 28 6 3.4938 -1.1805 -0.0026 29 7 2.1710 -1.1494 -0.0031 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6669 2.1350 0.0004 34 1 6.7912 -3.4002 -0.0035 35 1 8.2590 -4.4857 -0.0008 36 1 10.3252 -5.7892 -0.0222 37 1 11.8454 -7.4184 -1.6631 38 1 12.6139 -2.1353 -0.0308 39 1 10.5394 -0.8450 -0.0192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544983289.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:52 Heat of formation + Delta-G solvation = 65.403929 kcal Electronic energy + Delta-G solvation = -27224.982410 eV Core-core repulsion = 23134.677328 eV Total energy + Delta-G solvation = -4090.305082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.51894 -41.59595 -40.46955 -39.08168 -38.68027 -36.51117 -35.75435 -35.24539 -33.35474 -32.03704 -31.60470 -31.35926 -29.18074 -28.01087 -25.95172 -24.68653 -23.69330 -23.30657 -22.79556 -21.76231 -20.54234 -19.62068 -19.41145 -18.83209 -18.61301 -18.48562 -17.87269 -17.22390 -16.50342 -16.40026 -16.11111 -15.79156 -15.43747 -15.36594 -15.14909 -14.72867 -14.58002 -14.23702 -13.96888 -13.79921 -13.43966 -13.24320 -13.18545 -12.97213 -12.88221 -12.68446 -12.63215 -12.43194 -11.82875 -11.77719 -11.63974 -11.41783 -11.27722 -11.15462 -11.00804 -10.44975 -9.63501 -9.50579 -9.25415 -8.85615 -6.54065 -0.52173 -0.05516 0.14197 0.38447 0.46208 0.87538 1.13813 1.39432 1.43411 1.53636 1.98997 2.06742 2.15398 2.38840 2.68599 2.71193 3.00762 3.50071 3.62300 3.63162 3.93213 4.24109 4.27510 4.34040 4.39443 4.56271 4.80364 4.88373 4.90099 4.93017 4.98181 5.08721 5.21667 5.29612 5.36279 5.39394 5.53752 5.68499 5.78470 5.87693 5.94624 6.17643 6.22050 6.47622 6.48919 6.68325 6.71731 6.82485 6.96802 8.08753 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031325 B = 0.002071 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.650075 B =13514.786338 C =14323.800136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.239 3.761 3 C -0.339 4.339 4 C 0.525 3.475 5 O -0.584 6.584 6 N -0.380 5.380 7 N -0.316 5.316 8 C 0.543 3.457 9 N -0.612 5.612 10 C 0.576 3.424 11 O -0.540 6.540 12 C -0.291 4.291 13 C -0.046 4.046 14 C -0.195 4.195 15 C 0.103 3.897 16 C -0.460 4.460 17 H 0.086 0.914 18 C 0.040 3.960 19 N -0.786 5.786 20 Si 0.986 3.014 21 H -0.257 1.257 22 H -0.265 1.265 23 H -0.260 1.260 24 C -0.251 4.251 25 C -0.026 4.026 26 N -0.579 5.579 27 H 0.472 0.528 28 C 0.551 3.449 29 N -0.541 5.541 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.184 0.816 34 H 0.446 0.554 35 H 0.140 0.860 36 H 0.120 0.880 37 H 0.300 0.700 38 H 0.103 0.897 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.112 -5.059 1.718 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.110 3.890 3 C -0.368 4.368 4 C 0.332 3.668 5 O -0.464 6.464 6 N -0.188 5.188 7 N -0.148 5.148 8 C 0.176 3.824 9 N -0.270 5.270 10 C 0.372 3.628 11 O -0.414 6.414 12 C -0.296 4.296 13 C -0.065 4.065 14 C -0.214 4.214 15 C 0.099 3.901 16 C -0.487 4.487 17 H 0.104 0.896 18 C -0.181 4.181 19 N -0.409 5.409 20 Si 0.806 3.194 21 H -0.182 1.182 22 H -0.189 1.189 23 H -0.184 1.184 24 C -0.271 4.271 25 C -0.045 4.045 26 N -0.217 5.217 27 H 0.322 0.678 28 C 0.195 3.805 29 N -0.277 5.277 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.126 0.874 33 H 0.201 0.799 34 H 0.291 0.709 35 H 0.157 0.843 36 H 0.138 0.862 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.531 -3.437 1.561 18.912 hybrid contribution 1.194 -0.985 -0.045 1.548 sum -17.337 -4.422 1.515 17.956 Atomic orbital electron populations 1.20977 0.82876 1.05980 1.05616 1.21979 0.99009 0.84895 0.83113 1.22649 0.87901 1.02884 1.23346 1.17876 0.89863 0.79668 0.79416 1.90955 1.68309 1.31841 1.55294 1.49045 1.04591 1.09644 1.55542 1.78718 0.94242 1.08634 1.33229 1.20284 0.81649 0.87284 0.93168 1.42871 0.99363 1.11425 1.73367 1.18826 0.82620 0.87132 0.74228 1.90874 1.86155 1.15364 1.49048 1.18616 0.89655 0.93366 1.27949 1.20760 0.98554 0.91308 0.95847 1.21042 0.91774 0.99835 1.08768 1.18195 0.94425 0.91730 0.85717 1.20208 0.96689 0.98240 1.33535 0.89586 1.26888 0.99925 0.99566 0.91679 1.69721 1.31642 1.19944 1.19592 0.85121 0.77711 0.77270 0.79334 1.18152 1.18950 1.18418 1.20825 0.96813 0.94120 1.15293 1.20492 0.91980 0.98287 0.93762 1.41827 1.00512 1.10575 1.68780 0.67776 1.20329 0.88080 0.80660 0.91445 1.67802 0.97913 1.30328 1.31637 0.87280 0.88519 0.87429 0.79910 0.70898 0.84292 0.86201 0.88827 0.87847 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.19 71.24 0.73 0.03 16 2 C 0.24 4.29 6.80 42.33 0.29 4.58 16 3 C -0.34 -8.28 9.74 22.65 0.22 -8.06 16 4 C 0.52 19.16 7.71 84.71 0.65 19.81 16 5 O -0.58 -27.24 17.96 -5.81 -0.10 -27.35 16 6 N -0.38 -13.07 3.80 -321.90 -1.22 -14.29 16 7 N -0.32 -12.21 10.73 -58.04 -0.62 -12.83 16 8 C 0.54 15.02 8.86 260.15 2.31 17.32 16 9 N -0.61 -15.93 5.34 -314.71 -1.68 -17.61 16 10 C 0.58 21.65 7.72 86.70 0.67 22.32 16 11 O -0.54 -25.33 14.98 -4.02 -0.06 -25.39 16 12 C -0.29 -11.52 5.89 -19.94 -0.12 -11.64 16 13 C -0.05 -1.64 9.47 22.25 0.21 -1.43 16 14 C -0.20 -8.34 8.63 22.47 0.19 -8.14 16 15 C 0.10 4.83 5.58 -21.28 -0.12 4.71 16 16 C -0.46 -21.26 9.04 23.45 0.21 -21.05 16 17 H 0.09 3.86 7.91 -2.91 -0.02 3.83 16 18 C 0.04 1.69 5.14 85.35 0.44 2.13 16 19 N -0.79 -33.69 10.95 21.87 0.24 -33.45 16 20 Si 0.99 31.69 29.60 68.60 2.03 33.72 16 21 H -0.26 -7.99 7.11 99.48 0.71 -7.29 16 22 H -0.27 -8.10 7.11 99.48 0.71 -7.40 16 23 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16 24 C -0.25 -11.47 9.73 22.47 0.22 -11.25 16 25 C -0.03 -1.14 9.52 22.26 0.21 -0.93 16 26 N -0.58 -10.41 6.16 -198.27 -1.22 -11.63 16 27 H 0.47 3.38 8.96 -92.71 -0.83 2.55 16 28 C 0.55 13.38 9.02 260.87 2.35 15.74 16 29 N -0.54 -10.89 10.37 -185.36 -1.92 -12.81 16 30 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.11 0.39 8.08 -2.39 -0.02 0.37 16 33 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.45 7.24 6.82 -92.71 -0.63 6.61 16 35 H 0.14 3.40 6.37 -2.91 -0.02 3.39 16 36 H 0.12 5.16 6.16 -2.91 -0.02 5.14 16 37 H 0.30 11.33 8.29 -92.71 -0.77 10.56 16 38 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.10 4.45 7.63 -2.91 -0.02 4.43 16 Total: -1.00 -77.68 346.90 3.61 -74.07 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -0.30 Total: 23.43 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 8.47 Total: 24.14 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -6.43 Total: -102.63 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.16 Total: -52.74 kcal Atomic # 14 Polarization: 31.69 SS G_CDS: 2.03 Total: 33.72 kcal Total: -77.68 3.61 -74.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544983289.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.475 kcal (2) G-P(sol) polarization free energy of solvation -77.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds