Wall clock time and date at job start Tue Mar 31 2020 22:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35096 * 119.29876 * 2 1 4 4 N 1.36503 * 119.81736 * 180.02562 * 3 2 1 5 5 N 1.39701 * 134.40683 * 180.02562 * 4 3 2 6 6 N 1.28770 * 109.12272 * 179.97438 * 5 4 3 7 7 C 1.33840 * 110.36882 * 359.97438 * 6 5 4 8 8 C 1.47006 * 126.08308 * 179.97438 * 7 6 5 9 9 O 1.21672 * 120.00318 * 180.02562 * 8 7 6 10 10 N 1.34780 * 120.00317 * 0.02690 * 8 7 6 11 11 C 1.39848 * 120.00461 * 175.09840 * 10 8 7 12 12 C 1.39315 * 119.95001 * 326.46315 * 11 10 8 13 13 C 1.38479 * 120.43139 * 179.71971 * 12 11 10 14 14 C 1.37695 * 120.31909 * 0.55688 * 13 12 11 15 15 C 1.40745 * 119.88877 * 359.71862 * 14 13 12 16 16 C 1.41407 * 120.20651 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99509 * 151.37004 * 16 15 14 18 18 C 1.39928 * 120.00137 * 331.37196 * 16 15 14 19 19 N 1.30831 * 119.99996 * 166.74353 * 18 16 15 20 20 Si 1.86798 * 120.00007 * 346.74005 * 18 16 15 21 21 H 1.48497 * 109.47096 * 95.30736 * 20 18 16 22 22 H 1.48508 * 109.47259 * 215.30576 * 20 18 16 23 23 H 1.48496 * 109.47204 * 335.30296 * 20 18 16 24 24 C 1.38264 * 119.95394 * 146.73735 * 11 10 8 25 25 C 1.37000 * 119.02689 * 359.97438 * 4 3 2 26 26 C 1.40887 * 119.20645 * 0.02562 * 25 4 3 27 27 O 1.35532 * 120.29174 * 180.02562 * 26 25 4 28 28 N 1.31834 * 119.41947 * 359.97438 * 26 25 4 29 29 H 1.09004 * 109.47225 * 90.00103 * 1 2 3 30 30 H 1.09003 * 109.47372 * 209.99886 * 1 2 3 31 31 H 1.09001 * 109.47282 * 329.99968 * 1 2 3 32 32 H 1.08001 * 120.09654 * 359.74694 * 3 2 1 33 33 H 0.97002 * 119.99416 * 355.09929 * 10 8 7 34 34 H 1.08008 * 119.78229 * 359.97438 * 12 11 10 35 35 H 1.07991 * 119.84387 * 180.25696 * 13 12 11 36 36 H 1.07994 * 120.05439 * 179.74837 * 14 13 12 37 37 H 0.97003 * 119.99945 * 180.02562 * 19 18 16 38 38 H 1.08002 * 120.15602 * 359.97438 * 24 11 10 39 39 H 0.96704 * 114.00047 * 269.97591 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1681 1.1781 0.0000 4 7 3.5331 1.1905 -0.0005 5 7 4.5016 2.1973 -0.0002 6 7 5.6708 1.6579 -0.0005 7 6 5.5682 0.3234 -0.0004 8 6 6.6864 -0.6309 -0.0012 9 8 6.4652 -1.8273 -0.0015 10 7 7.9568 -0.1806 -0.0016 11 6 9.0191 -1.0843 0.1012 12 6 8.8749 -2.2439 0.8598 13 6 9.9183 -3.1484 0.9636 14 6 11.1148 -2.9055 0.3268 15 6 11.2771 -1.7355 -0.4384 16 6 12.5027 -1.4796 -1.0956 17 1 12.5167 -0.8952 -2.0038 18 6 13.6974 -1.9835 -0.5694 19 7 14.7862 -1.9761 -1.2947 20 14 13.7376 -2.6666 1.1687 21 1 13.5563 -4.1398 1.1259 22 1 15.0451 -2.3468 1.7962 23 1 12.6436 -2.0561 1.9659 24 6 10.2128 -0.8229 -0.5456 25 6 4.2086 -0.0013 -0.0005 26 6 3.4778 -1.2058 -0.0005 27 8 4.1237 -2.3974 0.0000 28 7 2.1601 -1.1638 0.0000 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6183 2.1077 -0.0041 33 1 8.1341 0.7704 -0.0731 34 1 7.9417 -2.4407 1.3668 35 1 9.7948 -4.0463 1.5508 36 1 11.9270 -3.6118 0.4140 37 1 15.6143 -2.3258 -0.9300 38 1 10.3270 0.0777 -1.1306 39 1 4.3111 -2.7436 -0.8833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556644606.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:18 Heat of formation + Delta-G solvation = 95.662827 kcal Electronic energy + Delta-G solvation = -27826.670556 eV Core-core repulsion = 23737.677598 eV Total energy + Delta-G solvation = -4088.992958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.42085 -40.12311 -39.62900 -37.93519 -37.32778 -34.66917 -34.33495 -33.20428 -32.83698 -31.14952 -30.27270 -28.94788 -27.87293 -25.47863 -25.10382 -24.08756 -23.49177 -21.76645 -21.11633 -20.20564 -19.25204 -19.12660 -18.02281 -17.72214 -17.12936 -17.10527 -15.99346 -15.58361 -15.37237 -15.32605 -14.92185 -14.51774 -14.35242 -14.14523 -13.82922 -13.54168 -13.16592 -12.94001 -12.73356 -12.63721 -12.59187 -12.11659 -12.07084 -11.94039 -11.72442 -11.66764 -11.04983 -10.73931 -10.61288 -10.51841 -10.42885 -10.23632 -9.78611 -9.61913 -9.37426 -8.98645 -8.61603 -7.67867 -7.14395 -6.90520 -4.48918 -0.29728 -0.02280 1.24837 1.39698 2.37751 2.54339 2.64836 2.76083 3.12337 3.15144 3.25711 3.34347 3.40423 3.44335 3.56351 3.89060 4.01254 4.22440 4.32012 4.49407 4.54690 4.67196 4.92860 5.03397 5.18544 5.28179 5.42706 5.44206 5.77436 6.03513 6.34561 6.37380 6.51971 6.73234 6.77031 6.84833 7.11862 7.14625 7.29893 7.37878 7.49708 7.66276 7.85259 7.88432 8.10157 8.34430 8.43711 8.64561 8.82073 10.11971 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029187 B = 0.002461 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.088834 B =11373.914495 C =11967.850894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.113 3.887 3 C 0.025 3.975 4 N -0.242 5.242 5 N -0.079 5.079 6 N -0.181 5.181 7 C -0.040 4.040 8 C 0.594 3.406 9 O -0.497 6.497 10 N -0.649 5.649 11 C 0.167 3.833 12 C -0.228 4.228 13 C -0.067 4.067 14 C -0.241 4.241 15 C 0.105 3.895 16 C -0.445 4.445 17 H 0.090 0.910 18 C 0.082 3.918 19 N -0.814 5.814 20 Si 0.915 3.085 21 H -0.272 1.272 22 H -0.295 1.295 23 H -0.240 1.240 24 C -0.227 4.227 25 C 0.028 3.972 26 C 0.414 3.586 27 O -0.430 6.430 28 N -0.470 5.470 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.192 0.808 33 H 0.410 0.590 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.285 0.715 38 H 0.105 0.895 39 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.080 5.039 2.058 26.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.012 4.012 3 C -0.104 4.104 4 N -0.015 5.015 5 N -0.055 5.055 6 N -0.044 5.044 7 C -0.192 4.192 8 C 0.377 3.623 9 O -0.370 6.370 10 N -0.292 5.292 11 C 0.075 3.925 12 C -0.249 4.249 13 C -0.086 4.086 14 C -0.260 4.260 15 C 0.101 3.899 16 C -0.474 4.474 17 H 0.108 0.892 18 C -0.136 4.136 19 N -0.438 5.438 20 Si 0.742 3.258 21 H -0.199 1.199 22 H -0.223 1.223 23 H -0.163 1.163 24 C -0.249 4.249 25 C -0.103 4.103 26 C 0.212 3.788 27 O -0.236 6.236 28 N -0.196 5.196 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.209 0.791 33 H 0.245 0.755 34 H 0.128 0.872 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -26.140 5.170 2.564 26.770 hybrid contribution 0.594 -0.019 0.142 0.611 sum -25.546 5.151 2.706 26.200 Atomic orbital electron populations 1.20722 0.85499 1.04823 1.04282 1.20796 0.98332 0.85371 0.96696 1.22463 0.78847 1.02607 1.06476 1.48006 1.07411 1.06822 1.39292 1.82306 0.88144 1.06164 1.28936 1.74208 1.15640 1.06982 1.07596 1.21572 0.91851 0.90335 1.15419 1.16459 0.81361 0.86524 0.77959 1.90869 1.83724 1.14011 1.48364 1.43218 1.04206 1.10857 1.70963 1.17467 0.86303 0.91061 0.97674 1.20355 0.99921 0.97226 1.07438 1.20466 0.93096 0.97302 0.97748 1.21010 0.97548 0.99366 1.08080 1.17481 0.92879 0.89615 0.89915 1.19454 0.89373 1.28954 1.09598 0.89183 1.26162 0.95088 0.92332 1.00066 1.69661 1.01459 1.35265 1.37430 0.86284 0.77486 0.79497 0.82504 1.19852 1.22276 1.16320 1.20703 0.94283 1.01761 1.08131 1.20941 0.93641 0.88899 1.06776 1.18722 0.85448 0.84780 0.89845 1.84847 1.74277 1.30112 1.34408 1.67964 1.08011 1.29315 1.14290 0.89232 0.89105 0.89607 0.79126 0.75454 0.87181 0.88374 0.88354 0.90488 0.87706 0.71914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.27 10.14 36.01 0.37 0.10 16 2 C 0.11 0.78 6.71 -83.01 -0.56 0.22 16 3 C 0.02 0.18 10.83 -16.59 -0.18 0.00 16 4 N -0.24 -2.73 3.98 -10.48 -0.04 -2.77 16 5 N -0.08 -1.05 13.83 60.35 0.83 -0.21 16 6 N -0.18 -2.64 11.97 33.24 0.40 -2.24 16 7 C -0.04 -0.60 7.08 -82.86 -0.59 -1.18 16 8 C 0.59 10.10 7.54 -12.71 -0.10 10.00 16 9 O -0.50 -9.15 11.68 -17.87 -0.21 -9.36 16 10 N -0.65 -11.51 5.33 -11.00 -0.06 -11.57 16 11 C 0.17 3.55 6.26 -83.79 -0.52 3.03 16 12 C -0.23 -5.00 8.66 -39.09 -0.34 -5.34 16 13 C -0.07 -1.50 10.02 -39.69 -0.40 -1.90 16 14 C -0.24 -5.84 6.92 -38.83 -0.27 -6.11 16 15 C 0.10 2.65 5.19 -106.85 -0.55 2.10 16 16 C -0.44 -12.01 9.61 -37.74 -0.36 -12.37 16 17 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 18 C 0.08 2.15 5.47 -17.35 -0.09 2.05 16 19 N -0.81 -21.80 13.93 55.55 0.77 -21.03 16 20 Si 0.91 20.97 24.37 -169.99 -4.14 16.83 16 21 H -0.27 -6.07 6.77 56.52 0.38 -5.68 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.24 -5.60 6.48 56.52 0.37 -5.24 16 24 C -0.23 -5.22 9.70 -38.68 -0.38 -5.60 16 25 C 0.03 0.36 6.81 -83.98 -0.57 -0.21 16 26 C 0.41 4.81 7.85 -16.55 -0.13 4.68 16 27 O -0.43 -5.14 10.81 -41.37 -0.45 -5.58 16 28 N -0.47 -4.65 10.38 -9.55 -0.10 -4.75 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.05 8.06 -51.93 -0.42 -0.37 16 32 H 0.19 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.41 6.39 8.51 -40.82 -0.35 6.04 16 34 H 0.11 2.35 6.40 -52.48 -0.34 2.02 16 35 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.10 2.37 4.20 -52.49 -0.22 2.15 16 37 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 38 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 39 H 0.42 3.45 8.91 45.56 0.41 3.85 16 LS Contribution 338.30 15.07 5.10 5.10 Total: -1.00 -32.48 338.30 -5.21 -37.69 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -2.64 Total: 8.41 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -4.67 Total: -10.53 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 1.81 Total: -42.56 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.66 Total: -14.94 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.14 Total: 16.83 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.48 -5.21 -37.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556644606.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.352 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds