Wall clock time and date at job start Tue Mar 31 2020 22:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35096 * 119.29876 * 2 1 4 4 N 1.36503 * 119.81736 * 180.02562 * 3 2 1 5 5 N 1.39701 * 134.40683 * 180.02562 * 4 3 2 6 6 N 1.28770 * 109.12272 * 179.97438 * 5 4 3 7 7 C 1.33840 * 110.36882 * 359.97438 * 6 5 4 8 8 C 1.47006 * 126.08308 * 179.97438 * 7 6 5 9 9 O 1.21672 * 120.00318 * 180.02562 * 8 7 6 10 10 N 1.34780 * 120.00317 * 0.02690 * 8 7 6 11 11 C 1.39848 * 120.00461 * 175.09840 * 10 8 7 12 12 C 1.39315 * 119.95001 * 326.46315 * 11 10 8 13 13 C 1.38479 * 120.43139 * 179.71971 * 12 11 10 14 14 C 1.37695 * 120.31909 * 0.55688 * 13 12 11 15 15 C 1.40745 * 119.88877 * 359.71862 * 14 13 12 16 16 C 1.41407 * 120.20651 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99509 * 151.37004 * 16 15 14 18 18 C 1.39928 * 120.00137 * 331.37196 * 16 15 14 19 19 N 1.30831 * 119.99996 * 166.74353 * 18 16 15 20 20 Si 1.86798 * 120.00007 * 346.74005 * 18 16 15 21 21 H 1.48497 * 109.47096 * 95.30736 * 20 18 16 22 22 H 1.48508 * 109.47259 * 215.30576 * 20 18 16 23 23 H 1.48496 * 109.47204 * 335.30296 * 20 18 16 24 24 C 1.38264 * 119.95394 * 146.73735 * 11 10 8 25 25 C 1.37000 * 119.02689 * 359.97438 * 4 3 2 26 26 C 1.40887 * 119.20645 * 0.02562 * 25 4 3 27 27 O 1.35532 * 120.29174 * 180.02562 * 26 25 4 28 28 N 1.31834 * 119.41947 * 359.97438 * 26 25 4 29 29 H 1.09004 * 109.47225 * 90.00103 * 1 2 3 30 30 H 1.09003 * 109.47372 * 209.99886 * 1 2 3 31 31 H 1.09001 * 109.47282 * 329.99968 * 1 2 3 32 32 H 1.08001 * 120.09654 * 359.74694 * 3 2 1 33 33 H 0.97002 * 119.99416 * 355.09929 * 10 8 7 34 34 H 1.08008 * 119.78229 * 359.97438 * 12 11 10 35 35 H 1.07991 * 119.84387 * 180.25696 * 13 12 11 36 36 H 1.07994 * 120.05439 * 179.74837 * 14 13 12 37 37 H 0.97003 * 119.99945 * 180.02562 * 19 18 16 38 38 H 1.08002 * 120.15602 * 359.97438 * 24 11 10 39 39 H 0.96704 * 114.00047 * 269.97591 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1681 1.1781 0.0000 4 7 3.5331 1.1905 -0.0005 5 7 4.5016 2.1973 -0.0002 6 7 5.6708 1.6579 -0.0005 7 6 5.5682 0.3234 -0.0004 8 6 6.6864 -0.6309 -0.0012 9 8 6.4652 -1.8273 -0.0015 10 7 7.9568 -0.1806 -0.0016 11 6 9.0191 -1.0843 0.1012 12 6 8.8749 -2.2439 0.8598 13 6 9.9183 -3.1484 0.9636 14 6 11.1148 -2.9055 0.3268 15 6 11.2771 -1.7355 -0.4384 16 6 12.5027 -1.4796 -1.0956 17 1 12.5167 -0.8952 -2.0038 18 6 13.6974 -1.9835 -0.5694 19 7 14.7862 -1.9761 -1.2947 20 14 13.7376 -2.6666 1.1687 21 1 13.5563 -4.1398 1.1259 22 1 15.0451 -2.3468 1.7962 23 1 12.6436 -2.0561 1.9659 24 6 10.2128 -0.8229 -0.5456 25 6 4.2086 -0.0013 -0.0005 26 6 3.4778 -1.2058 -0.0005 27 8 4.1237 -2.3974 0.0000 28 7 2.1601 -1.1638 0.0000 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6183 2.1077 -0.0041 33 1 8.1341 0.7704 -0.0731 34 1 7.9417 -2.4407 1.3668 35 1 9.7948 -4.0463 1.5508 36 1 11.9270 -3.6118 0.4140 37 1 15.6143 -2.3258 -0.9300 38 1 10.3270 0.0777 -1.1306 39 1 4.3111 -2.7436 -0.8833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556644606.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:17 Heat of formation + Delta-G solvation = 69.697451 kcal Electronic energy + Delta-G solvation = -27827.796499 eV Core-core repulsion = 23737.677598 eV Total energy + Delta-G solvation = -4090.118901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.32162 -41.32458 -40.71839 -39.24691 -38.55521 -36.18191 -35.37753 -34.96464 -33.55279 -32.29512 -31.97904 -30.45851 -28.58243 -27.06862 -26.39974 -25.14906 -24.25850 -23.21294 -22.87665 -21.57414 -20.24324 -20.00396 -19.62918 -18.75998 -18.36686 -18.03616 -17.78930 -17.02438 -16.56515 -16.37721 -16.17875 -15.95987 -15.43939 -15.37326 -14.95147 -14.52986 -14.48042 -14.35104 -13.93340 -13.90200 -13.46544 -13.40752 -13.28581 -12.98180 -12.90914 -12.76961 -12.59506 -12.55478 -12.41745 -11.94446 -11.54431 -11.31696 -11.28920 -11.24416 -11.18362 -10.71852 -9.55504 -9.43718 -8.87387 -8.86152 -6.51875 -1.10457 -0.85768 0.24890 0.43795 0.79474 0.81550 1.29820 1.44338 1.52840 1.69004 1.86563 1.97695 2.09617 2.15596 2.57454 2.64897 2.80330 2.94304 3.22314 3.51220 3.72793 3.86480 3.96187 4.19172 4.32844 4.51217 4.52673 4.60339 4.79965 4.82373 4.83021 4.95029 4.95942 4.99152 5.30855 5.32606 5.55284 5.68696 5.80682 5.93147 6.11279 6.15814 6.30011 6.41105 6.42425 6.55852 6.70397 6.81375 7.03103 8.21151 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029187 B = 0.002461 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.088834 B =11373.914495 C =11967.850894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.119 3.881 3 C 0.036 3.964 4 N -0.236 5.236 5 N -0.095 5.095 6 N -0.191 5.191 7 C -0.069 4.069 8 C 0.598 3.402 9 O -0.514 6.514 10 N -0.650 5.650 11 C 0.177 3.823 12 C -0.223 4.223 13 C -0.067 4.067 14 C -0.255 4.255 15 C 0.088 3.912 16 C -0.478 4.478 17 H 0.058 0.942 18 C 0.045 3.955 19 N -0.852 5.852 20 Si 0.968 3.032 21 H -0.259 1.259 22 H -0.283 1.283 23 H -0.247 1.247 24 C -0.237 4.237 25 C 0.024 3.976 26 C 0.393 3.607 27 O -0.446 6.446 28 N -0.467 5.467 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.239 0.761 33 H 0.419 0.581 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.293 0.707 38 H 0.110 0.890 39 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.290 5.289 3.540 30.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.007 4.007 3 C -0.093 4.093 4 N -0.007 5.007 5 N -0.071 5.071 6 N -0.054 5.054 7 C -0.221 4.221 8 C 0.384 3.616 9 O -0.387 6.387 10 N -0.294 5.294 11 C 0.083 3.917 12 C -0.244 4.244 13 C -0.085 4.085 14 C -0.274 4.274 15 C 0.085 3.915 16 C -0.507 4.507 17 H 0.076 0.924 18 C -0.169 4.169 19 N -0.479 5.479 20 Si 0.793 3.207 21 H -0.185 1.185 22 H -0.210 1.210 23 H -0.170 1.170 24 C -0.258 4.258 25 C -0.107 4.107 26 C 0.193 3.807 27 O -0.254 6.254 28 N -0.193 5.193 29 H 0.127 0.873 30 H 0.107 0.893 31 H 0.137 0.863 32 H 0.255 0.745 33 H 0.257 0.743 34 H 0.138 0.862 35 H 0.148 0.852 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -30.350 5.435 4.030 31.095 hybrid contribution 1.368 -0.034 -0.350 1.413 sum -28.981 5.402 3.680 29.709 Atomic orbital electron populations 1.20964 0.81905 1.06380 1.05884 1.21672 1.00236 0.84301 0.94491 1.23483 0.77176 1.04795 1.03835 1.48219 1.08601 1.05878 1.38038 1.82214 0.88093 1.06376 1.30448 1.74131 1.16705 1.06973 1.07638 1.21069 0.91863 0.90147 1.18991 1.16672 0.81360 0.86797 0.76817 1.90844 1.84038 1.14881 1.48955 1.43163 1.03911 1.10876 1.71451 1.17468 0.86605 0.91357 0.96221 1.20619 1.00095 0.97054 1.06599 1.20806 0.92105 0.98366 0.97252 1.21105 0.98580 0.99093 1.08619 1.17627 0.92821 0.90621 0.90441 1.19436 0.91042 1.30569 1.09690 0.92392 1.26838 0.94457 0.92467 1.03173 1.69691 1.02205 1.36997 1.39011 0.85459 0.77604 0.79441 0.78218 1.18466 1.20988 1.17038 1.20820 0.94652 1.01869 1.08492 1.20969 0.93165 0.89846 1.06689 1.18715 0.85916 0.84302 0.91776 1.84811 1.74632 1.30384 1.35609 1.68059 1.07167 1.31087 1.12990 0.87349 0.89322 0.86301 0.74465 0.74349 0.86249 0.85192 0.88269 0.89614 0.87194 0.70836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.04 10.14 71.24 0.72 0.68 16 2 C 0.12 1.16 6.71 41.59 0.28 1.44 16 3 C 0.04 0.36 10.83 83.24 0.90 1.26 16 4 N -0.24 -4.75 3.98 -187.06 -0.75 -5.50 16 5 N -0.10 -2.39 13.83 37.02 0.51 -1.88 16 6 N -0.19 -5.52 11.97 -48.75 -0.58 -6.10 16 7 C -0.07 -2.02 7.08 41.51 0.29 -1.73 16 8 C 0.60 20.30 7.54 86.54 0.65 20.96 16 9 O -0.51 -18.76 11.68 17.81 0.21 -18.56 16 10 N -0.65 -23.04 5.33 -306.93 -1.64 -24.67 16 11 C 0.18 7.49 6.26 38.13 0.24 7.73 16 12 C -0.22 -9.49 8.66 22.59 0.20 -9.29 16 13 C -0.07 -2.87 10.02 22.20 0.22 -2.64 16 14 C -0.25 -12.28 6.92 22.75 0.16 -12.12 16 15 C 0.09 4.57 5.19 -21.31 -0.11 4.46 16 16 C -0.48 -27.07 9.61 23.46 0.23 -26.84 16 17 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 18 C 0.04 2.43 5.47 85.25 0.47 2.89 16 19 N -0.85 -47.32 13.93 21.82 0.30 -47.02 16 20 Si 0.97 43.47 24.37 68.60 1.67 45.14 16 21 H -0.26 -10.99 6.77 99.48 0.67 -10.31 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.25 -11.24 6.48 99.48 0.64 -10.60 16 24 C -0.24 -11.11 9.70 22.85 0.22 -10.89 16 25 C 0.02 0.60 6.81 39.36 0.27 0.87 16 26 C 0.39 8.66 7.85 85.34 0.67 9.33 16 27 O -0.45 -10.49 10.81 -66.29 -0.72 -11.20 16 28 N -0.47 -8.07 10.38 -297.27 -3.08 -11.15 16 29 H 0.11 -0.23 8.14 -2.38 -0.02 -0.25 16 30 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.12 -0.64 8.06 -2.39 -0.02 -0.66 16 32 H 0.24 0.00 8.06 -2.91 -0.02 -0.02 16 33 H 0.42 13.19 8.51 -92.71 -0.79 12.40 16 34 H 0.12 4.91 6.40 -2.91 -0.02 4.89 16 35 H 0.13 4.71 8.06 -2.92 -0.02 4.68 16 36 H 0.10 4.72 4.20 -2.91 -0.01 4.71 16 37 H 0.29 14.65 8.30 -92.71 -0.77 13.88 16 38 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 39 H 0.43 7.10 8.91 -74.05 -0.66 6.44 16 Total: -1.00 -73.33 338.30 0.96 -72.37 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.38 Total: 22.47 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 5.40 Total: -13.90 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -5.23 Total: -96.33 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.51 Total: -29.76 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.67 Total: 45.14 kcal Total: -73.33 0.96 -72.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556644606.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.072 kcal (2) G-P(sol) polarization free energy of solvation -73.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds