Wall clock time and date at job start Tue Mar 31 2020 22:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86805 * 119.99614 * 2 1 4 4 H 1.48499 * 109.47179 * 270.00387 * 3 2 1 5 5 H 1.48500 * 109.46973 * 30.00162 * 3 2 1 6 6 H 1.48500 * 109.46975 * 149.99945 * 3 2 1 7 7 C 1.38629 * 120.00692 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99247 * 359.97438 * 7 2 1 9 9 O 1.34810 * 120.00540 * 179.97438 * 7 2 1 10 10 C 1.35773 * 117.00401 * 185.70684 * 9 7 2 11 11 C 1.38906 * 119.99661 * 6.26761 * 10 9 7 12 12 C 1.38012 * 120.00126 * 180.02562 * 11 10 9 13 13 C 1.38921 * 119.99924 * 359.97438 * 12 11 10 14 14 N 1.40013 * 120.00207 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00100 * 144.76833 * 14 13 12 16 16 O 1.21606 * 119.99514 * 4.52501 * 15 14 13 17 17 N 1.34770 * 120.00213 * 184.25086 * 15 14 13 18 18 C 1.40319 * 120.00084 * 174.62915 * 17 15 14 19 19 C 1.40745 * 120.34819 * 332.47321 * 18 17 15 20 20 N 1.31160 * 120.22171 * 179.97438 * 19 18 17 21 21 C 1.33959 * 120.93117 * 359.97438 * 20 19 18 22 22 C 1.38975 * 132.47034 * 179.97438 * 21 20 19 23 23 C 1.38597 * 107.64670 * 180.02562 * 22 21 20 24 24 N 1.31471 * 108.98107 * 0.02562 * 23 22 21 25 25 N 1.37084 * 120.65036 * 0.02562 * 21 20 19 26 26 C 1.36051 * 120.35044 * 152.19682 * 18 17 15 27 27 C 1.38911 * 119.99230 * 0.26048 * 13 12 11 28 28 C 1.38005 * 120.00437 * 359.48348 * 27 13 12 29 29 H 0.97001 * 120.00507 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00415 * 0.02562 * 11 10 9 31 31 H 1.08003 * 119.99758 * 179.97438 * 12 11 10 32 32 H 0.97000 * 119.99957 * 324.76998 * 14 13 12 33 33 H 0.97005 * 120.00169 * 354.63003 * 17 15 14 34 34 H 1.08006 * 119.88563 * 0.02562 * 19 18 17 35 35 H 1.07997 * 126.17771 * 359.97438 * 22 21 20 36 36 H 1.07997 * 125.50948 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.47100 * 0.02562 * 26 18 17 38 38 H 1.08007 * 119.99567 * 179.75009 * 27 13 12 39 39 H 1.07995 * 120.00530 * 180.25203 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0466 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4403 0.7001 7 6 2.0090 -1.2005 -0.0005 8 1 1.4690 -2.1358 -0.0005 9 8 3.3571 -1.2004 -0.0011 10 6 3.9736 -2.4041 -0.1219 11 6 3.2234 -3.5470 -0.3680 12 6 3.8499 -4.7706 -0.4903 13 6 5.2308 -4.8592 -0.3677 14 7 5.8664 -6.1007 -0.4912 15 6 7.0819 -6.1810 -1.0677 16 8 7.6626 -5.1675 -1.4060 17 7 7.6564 -7.3842 -1.2643 18 6 8.8687 -7.4769 -1.9647 19 6 9.2076 -6.5108 -2.9305 20 7 10.3417 -6.5996 -3.5834 21 6 11.1958 -7.6040 -3.3466 22 6 12.4355 -7.9282 -3.8845 23 6 12.8732 -9.0871 -3.2630 24 7 11.9691 -9.4713 -2.3893 25 7 10.9030 -8.5651 -2.4140 26 6 9.7314 -8.4985 -1.7135 27 6 5.9804 -3.7170 -0.1167 28 6 5.3544 -2.4927 0.0003 29 1 -0.4851 0.8400 0.0004 30 1 2.1498 -3.4781 -0.4637 31 1 3.2665 -5.6592 -0.6813 32 1 5.4318 -6.9029 -0.1619 33 1 7.2317 -8.1863 -0.9215 34 1 8.5319 -5.6932 -3.1340 35 1 12.9624 -7.3770 -4.6494 36 1 13.8061 -9.5927 -3.4639 37 1 9.4922 -9.2479 -0.9736 38 1 7.0536 -3.7865 -0.0174 39 1 5.9376 -1.6040 0.1914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001563110266.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:34 Heat of formation + Delta-G solvation = 117.944953 kcal Electronic energy + Delta-G solvation = -26887.916100 eV Core-core repulsion = 22799.889368 eV Total energy + Delta-G solvation = -4088.026732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.65921 -41.00720 -39.27191 -38.36193 -36.90287 -35.49172 -34.35665 -33.85956 -32.39349 -30.47305 -30.36542 -29.28092 -27.91896 -25.38766 -25.19948 -23.86633 -22.50554 -22.11438 -21.62522 -20.86180 -19.48988 -18.57048 -18.08708 -17.72766 -17.45465 -17.11328 -16.45458 -16.25811 -15.58665 -15.44239 -14.93101 -14.75233 -14.49384 -14.05331 -13.96263 -13.79394 -13.75473 -13.42341 -13.07492 -12.86279 -12.45534 -12.34330 -12.10534 -11.92513 -11.74864 -11.60432 -11.01389 -10.90934 -10.82204 -10.37500 -10.22264 -10.21529 -9.84839 -9.42286 -9.20719 -8.84912 -8.38782 -8.10095 -7.18151 -6.47529 -4.13544 0.14878 0.50536 1.46987 1.92626 2.03109 2.22204 2.31737 2.80024 3.16027 3.19956 3.24300 3.38393 3.60142 3.62952 3.79752 3.96563 4.19884 4.38314 4.49299 4.77150 4.83142 4.95730 5.03299 5.15073 5.37804 5.44237 5.57599 5.62000 5.76016 5.86756 5.98705 6.00903 6.07133 6.21513 6.32221 6.56358 6.66531 6.92253 6.96622 7.08008 7.14315 7.29418 7.48032 7.56435 7.70352 7.95386 8.15188 8.87633 9.49237 10.59733 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031854 B = 0.001894 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.803022 B =14777.287264 C =15377.937992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.214 6.214 10 C 0.154 3.846 11 C -0.206 4.206 12 C -0.087 4.087 13 C 0.050 3.950 14 N -0.661 5.661 15 C 0.703 3.297 16 O -0.556 6.556 17 N -0.672 5.672 18 C 0.090 3.910 19 C 0.192 3.808 20 N -0.445 5.445 21 C 0.244 3.756 22 C -0.262 4.262 23 C 0.084 3.916 24 N -0.316 5.316 25 N -0.296 5.296 26 C 0.106 3.894 27 C -0.066 4.066 28 C -0.178 4.178 29 H 0.280 0.720 30 H 0.139 0.861 31 H 0.114 0.886 32 H 0.403 0.597 33 H 0.412 0.588 34 H 0.200 0.800 35 H 0.162 0.838 36 H 0.198 0.802 37 H 0.180 0.820 38 H 0.132 0.868 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.465 -19.743 -3.168 26.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.118 6.118 10 C 0.101 3.899 11 C -0.226 4.226 12 C -0.108 4.108 13 C -0.042 4.042 14 N -0.307 5.307 15 C 0.404 3.596 16 O -0.431 6.431 17 N -0.322 5.322 18 C -0.013 4.013 19 C 0.005 3.995 20 N -0.155 5.155 21 C 0.016 3.984 22 C -0.293 4.293 23 C -0.093 4.093 24 N -0.141 5.141 25 N -0.067 5.067 26 C -0.033 4.033 27 C -0.086 4.086 28 C -0.198 4.198 29 H 0.090 0.910 30 H 0.156 0.844 31 H 0.132 0.868 32 H 0.238 0.762 33 H 0.249 0.751 34 H 0.217 0.783 35 H 0.180 0.820 36 H 0.215 0.785 37 H 0.197 0.803 38 H 0.150 0.850 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 18.007 -18.838 -3.256 26.262 hybrid contribution -0.463 -0.280 0.373 0.657 sum 17.543 -19.118 -2.883 26.107 Atomic orbital electron populations 1.69647 1.05581 1.28612 1.47626 1.24477 0.95041 0.98930 0.95538 0.86181 0.80366 0.81333 0.79062 1.19826 1.20758 1.18257 1.20746 0.76856 0.96618 1.52303 0.87618 1.83603 1.22619 1.25714 1.79900 1.19199 0.91629 0.85713 0.93316 1.21095 1.01277 0.91536 1.08712 1.20502 0.92019 0.97565 1.00672 1.17035 0.91142 0.83767 1.12277 1.42198 1.17363 1.09899 1.61260 1.15828 0.81904 0.82835 0.79052 1.90951 1.62830 1.33284 1.56021 1.42331 1.21658 1.09457 1.58772 1.17651 0.88469 0.98041 0.97132 1.24048 0.92436 0.96318 0.86660 1.68405 1.02983 1.18935 1.25182 1.20909 0.97102 0.87982 0.92454 1.20987 0.95444 1.02576 1.10328 1.23814 0.98349 0.94760 0.92390 1.77914 0.96271 1.13303 1.26639 1.46865 1.13721 1.19679 1.26474 1.21177 0.83162 1.01554 0.97396 1.20744 0.99762 0.90621 0.97519 1.20148 0.91803 0.97822 1.09992 0.90978 0.84385 0.86797 0.76231 0.75149 0.78330 0.82022 0.78542 0.80323 0.84990 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.62 13.96 55.48 0.77 -23.85 16 2 C 0.06 1.74 5.49 -17.52 -0.10 1.64 16 3 Si 0.91 21.21 28.62 -169.99 -4.86 16.35 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.39 -10.56 9.89 30.88 0.31 -10.25 16 8 H 0.11 2.89 5.54 -52.48 -0.29 2.60 16 9 O -0.21 -5.43 8.58 0.04 0.00 -5.43 16 10 C 0.15 3.38 6.65 -39.09 -0.26 3.12 16 11 C -0.21 -4.07 9.12 -39.42 -0.36 -4.43 16 12 C -0.09 -1.37 9.96 -39.41 -0.39 -1.76 16 13 C 0.05 0.75 6.30 -83.62 -0.53 0.22 16 14 N -0.66 -6.80 5.34 -14.18 -0.08 -6.87 16 15 C 0.70 7.57 8.20 -86.93 -0.71 6.86 16 16 O -0.56 -8.09 11.16 5.27 0.06 -8.04 16 17 N -0.67 -4.61 5.38 -14.33 -0.08 -4.69 16 18 C 0.09 0.78 6.36 -83.81 -0.53 0.25 16 19 C 0.19 2.16 9.93 -16.89 -0.17 1.99 16 20 N -0.44 -5.59 10.47 -12.09 -0.13 -5.72 16 21 C 0.24 2.93 7.92 -155.57 -1.23 1.69 16 22 C -0.26 -2.61 10.91 -39.18 -0.43 -3.03 16 23 C 0.08 0.72 11.94 -17.57 -0.21 0.51 16 24 N -0.32 -3.41 12.66 30.47 0.39 -3.02 16 25 N -0.30 -3.23 3.90 -12.04 -0.05 -3.28 16 26 C 0.11 0.86 11.20 -16.19 -0.18 0.68 16 27 C -0.07 -1.13 8.69 -39.42 -0.34 -1.47 16 28 C -0.18 -3.42 9.99 -39.42 -0.39 -3.82 16 29 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.14 2.86 5.72 -52.49 -0.30 2.56 16 31 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 32 H 0.40 2.54 8.84 -40.82 -0.36 2.18 16 33 H 0.41 1.16 8.81 -40.82 -0.36 0.80 16 34 H 0.20 2.36 6.06 -52.48 -0.32 2.05 16 35 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 36 H 0.20 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.18 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.13 2.18 6.25 -52.48 -0.33 1.86 16 39 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -33.75 343.77 -7.53 -41.28 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -3.21 Total: 5.89 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -5.53 Total: -7.80 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.83 Total: -47.42 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.06 Total: -13.47 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.86 Total: 16.35 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.75 -7.53 -41.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563110266.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.224 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds