Wall clock time and date at job start Tue Mar 31 2020 22:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86805 * 119.99614 * 2 1 4 4 H 1.48499 * 109.47179 * 270.00387 * 3 2 1 5 5 H 1.48500 * 109.46973 * 30.00162 * 3 2 1 6 6 H 1.48500 * 109.46975 * 149.99945 * 3 2 1 7 7 C 1.38629 * 120.00692 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99247 * 359.97438 * 7 2 1 9 9 O 1.34810 * 120.00540 * 179.97438 * 7 2 1 10 10 C 1.35773 * 117.00401 * 185.70684 * 9 7 2 11 11 C 1.38906 * 119.99661 * 6.26761 * 10 9 7 12 12 C 1.38012 * 120.00126 * 180.02562 * 11 10 9 13 13 C 1.38921 * 119.99924 * 359.97438 * 12 11 10 14 14 N 1.40013 * 120.00207 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00100 * 144.76833 * 14 13 12 16 16 O 1.21606 * 119.99514 * 4.52501 * 15 14 13 17 17 N 1.34770 * 120.00213 * 184.25086 * 15 14 13 18 18 C 1.40319 * 120.00084 * 174.62915 * 17 15 14 19 19 C 1.40745 * 120.34819 * 332.47321 * 18 17 15 20 20 N 1.31160 * 120.22171 * 179.97438 * 19 18 17 21 21 C 1.33959 * 120.93117 * 359.97438 * 20 19 18 22 22 C 1.38975 * 132.47034 * 179.97438 * 21 20 19 23 23 C 1.38597 * 107.64670 * 180.02562 * 22 21 20 24 24 N 1.31471 * 108.98107 * 0.02562 * 23 22 21 25 25 N 1.37084 * 120.65036 * 0.02562 * 21 20 19 26 26 C 1.36051 * 120.35044 * 152.19682 * 18 17 15 27 27 C 1.38911 * 119.99230 * 0.26048 * 13 12 11 28 28 C 1.38005 * 120.00437 * 359.48348 * 27 13 12 29 29 H 0.97001 * 120.00507 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00415 * 0.02562 * 11 10 9 31 31 H 1.08003 * 119.99758 * 179.97438 * 12 11 10 32 32 H 0.97000 * 119.99957 * 324.76998 * 14 13 12 33 33 H 0.97005 * 120.00169 * 354.63003 * 17 15 14 34 34 H 1.08006 * 119.88563 * 0.02562 * 19 18 17 35 35 H 1.07997 * 126.17771 * 359.97438 * 22 21 20 36 36 H 1.07997 * 125.50948 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.47100 * 0.02562 * 26 18 17 38 38 H 1.08007 * 119.99567 * 179.75009 * 27 13 12 39 39 H 1.07995 * 120.00530 * 180.25203 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0466 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4403 0.7001 7 6 2.0090 -1.2005 -0.0005 8 1 1.4690 -2.1358 -0.0005 9 8 3.3571 -1.2004 -0.0011 10 6 3.9736 -2.4041 -0.1219 11 6 3.2234 -3.5470 -0.3680 12 6 3.8499 -4.7706 -0.4903 13 6 5.2308 -4.8592 -0.3677 14 7 5.8664 -6.1007 -0.4912 15 6 7.0819 -6.1810 -1.0677 16 8 7.6626 -5.1675 -1.4060 17 7 7.6564 -7.3842 -1.2643 18 6 8.8687 -7.4769 -1.9647 19 6 9.2076 -6.5108 -2.9305 20 7 10.3417 -6.5996 -3.5834 21 6 11.1958 -7.6040 -3.3466 22 6 12.4355 -7.9282 -3.8845 23 6 12.8732 -9.0871 -3.2630 24 7 11.9691 -9.4713 -2.3893 25 7 10.9030 -8.5651 -2.4140 26 6 9.7314 -8.4985 -1.7135 27 6 5.9804 -3.7170 -0.1167 28 6 5.3544 -2.4927 0.0003 29 1 -0.4851 0.8400 0.0004 30 1 2.1498 -3.4781 -0.4637 31 1 3.2665 -5.6592 -0.6813 32 1 5.4318 -6.9029 -0.1619 33 1 7.2317 -8.1863 -0.9215 34 1 8.5319 -5.6932 -3.1340 35 1 12.9624 -7.3770 -4.6494 36 1 13.8061 -9.5927 -3.4639 37 1 9.4922 -9.2479 -0.9736 38 1 7.0536 -3.7865 -0.0174 39 1 5.9376 -1.6040 0.1914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001563110266.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:33 Heat of formation + Delta-G solvation = 94.327741 kcal Electronic energy + Delta-G solvation = -26888.940219 eV Core-core repulsion = 22799.889368 eV Total energy + Delta-G solvation = -4089.050852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.40186 -41.96379 -40.74008 -39.35003 -38.24197 -36.34055 -35.54478 -34.65172 -34.32260 -31.87536 -31.26577 -30.17576 -29.16288 -27.14875 -25.99818 -24.75357 -23.93614 -23.15868 -22.49194 -21.97577 -20.49776 -19.65001 -19.45139 -19.05958 -18.65403 -18.06679 -17.44096 -17.10191 -16.67477 -16.39662 -16.25655 -15.83712 -15.71407 -15.49753 -15.31202 -15.10629 -14.61558 -14.43767 -14.18552 -14.13167 -14.07531 -13.80966 -13.40505 -13.31408 -12.85302 -12.71913 -12.51299 -12.34560 -11.97588 -11.59207 -11.48790 -11.46636 -11.04873 -10.96373 -10.67147 -9.97266 -9.83482 -8.86185 -8.62397 -8.47544 -6.18016 -0.56905 -0.27334 0.49205 0.54262 0.78783 1.33735 1.36608 1.44250 1.53551 1.59292 1.88771 2.29990 2.36264 2.78530 2.82069 2.86371 3.12118 3.14738 3.17050 3.30150 3.78913 4.06570 4.11476 4.16241 4.29869 4.46571 4.49936 4.56671 4.70644 4.79343 4.92384 5.01186 5.06954 5.19639 5.34311 5.35814 5.49565 5.55066 5.57345 5.75346 5.81466 5.92930 6.21841 6.36254 6.50438 6.78848 6.87660 7.27117 7.62908 8.63572 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031854 B = 0.001894 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.803022 B =14777.287264 C =15377.937992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.264 1.264 7 C -0.394 4.394 8 H 0.088 0.912 9 O -0.246 6.246 10 C 0.113 3.887 11 C -0.215 4.215 12 C -0.078 4.078 13 C 0.088 3.912 14 N -0.648 5.648 15 C 0.706 3.294 16 O -0.593 6.593 17 N -0.644 5.644 18 C 0.083 3.917 19 C 0.183 3.817 20 N -0.475 5.475 21 C 0.216 3.784 22 C -0.273 4.273 23 C 0.094 3.906 24 N -0.334 5.334 25 N -0.308 5.308 26 C 0.123 3.877 27 C -0.071 4.071 28 C -0.178 4.178 29 H 0.284 0.716 30 H 0.121 0.879 31 H 0.157 0.843 32 H 0.428 0.572 33 H 0.436 0.564 34 H 0.187 0.813 35 H 0.175 0.825 36 H 0.238 0.762 37 H 0.220 0.780 38 H 0.141 0.859 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.853 -23.102 -2.943 30.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.470 4.470 8 H 0.105 0.895 9 O -0.154 6.154 10 C 0.064 3.936 11 C -0.234 4.234 12 C -0.099 4.099 13 C -0.006 4.006 14 N -0.297 5.297 15 C 0.407 3.593 16 O -0.471 6.471 17 N -0.296 5.296 18 C -0.020 4.020 19 C -0.003 4.003 20 N -0.186 5.186 21 C -0.012 4.012 22 C -0.304 4.304 23 C -0.082 4.082 24 N -0.159 5.159 25 N -0.079 5.079 26 C -0.015 4.015 27 C -0.091 4.091 28 C -0.198 4.198 29 H 0.093 0.907 30 H 0.138 0.862 31 H 0.175 0.825 32 H 0.268 0.732 33 H 0.277 0.723 34 H 0.204 0.796 35 H 0.192 0.808 36 H 0.254 0.746 37 H 0.236 0.764 38 H 0.159 0.841 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 20.417 -22.315 -3.021 30.396 hybrid contribution -0.865 0.345 0.233 0.960 sum 19.552 -21.969 -2.789 29.542 Atomic orbital electron populations 1.69721 1.06706 1.29455 1.50286 1.25202 0.95831 1.01926 0.95776 0.85300 0.78895 0.77956 0.79114 1.19427 1.19315 1.18828 1.20708 0.77995 0.96182 1.52162 0.89499 1.83544 1.21338 1.27550 1.82952 1.19663 0.92778 0.85569 0.95606 1.21145 1.00582 0.92707 1.09012 1.20783 0.92600 0.97413 0.99066 1.17050 0.90912 0.85007 1.07661 1.41924 1.17258 1.09155 1.61355 1.15869 0.81586 0.83346 0.78534 1.90957 1.63706 1.35130 1.57270 1.41859 1.20816 1.09123 1.57798 1.17423 0.89344 0.97993 0.97210 1.23957 0.92144 0.96781 0.87457 1.68340 1.03821 1.19996 1.26437 1.21243 0.97890 0.88504 0.93557 1.21374 0.95097 1.03224 1.10662 1.24481 0.99009 0.93953 0.90770 1.77877 0.96747 1.13710 1.27611 1.47097 1.14509 1.19558 1.26726 1.21751 0.81753 1.01397 0.96611 1.20920 1.00310 0.90509 0.97390 1.20323 0.90841 0.99158 1.09477 0.90674 0.86168 0.82529 0.73241 0.72273 0.79605 0.80806 0.74611 0.76354 0.84109 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.86 13.96 21.61 0.30 -53.55 16 2 C 0.01 0.64 5.49 84.83 0.47 1.10 16 3 Si 0.96 45.16 28.62 68.60 1.96 47.13 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.39 -22.48 9.89 67.91 0.67 -21.81 16 8 H 0.09 5.09 5.54 -2.91 -0.02 5.07 16 9 O -0.25 -13.09 8.58 -22.79 -0.20 -13.28 16 10 C 0.11 5.09 6.65 22.59 0.15 5.24 16 11 C -0.21 -8.53 9.12 22.38 0.20 -8.32 16 12 C -0.08 -2.25 9.96 22.38 0.22 -2.03 16 13 C 0.09 2.35 6.30 38.16 0.24 2.59 16 14 N -0.65 -10.54 5.34 -317.04 -1.69 -12.23 16 15 C 0.71 12.81 8.20 179.06 1.47 14.28 16 16 O -0.59 -16.11 11.16 -4.05 -0.05 -16.15 16 17 N -0.64 -6.31 5.38 -317.50 -1.71 -8.01 16 18 C 0.08 1.23 6.36 37.89 0.24 1.47 16 19 C 0.18 3.96 9.93 85.41 0.85 4.81 16 20 N -0.47 -11.82 10.47 -192.16 -2.01 -13.83 16 21 C 0.22 4.94 7.92 133.19 1.05 6.00 16 22 C -0.27 -4.99 10.91 22.53 0.25 -4.75 16 23 C 0.09 1.36 11.94 84.83 1.01 2.37 16 24 N -0.33 -6.31 12.66 -57.52 -0.73 -7.03 16 25 N -0.31 -6.01 3.90 -192.00 -0.75 -6.76 16 26 C 0.12 1.60 11.20 83.43 0.93 2.53 16 27 C -0.07 -2.29 8.69 22.38 0.19 -2.10 16 28 C -0.18 -6.88 9.99 22.38 0.22 -6.66 16 29 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.12 5.21 5.72 -2.91 -0.02 5.19 16 31 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.43 3.03 8.84 -92.71 -0.82 2.21 16 33 H 0.44 0.18 8.81 -92.70 -0.82 -0.64 16 34 H 0.19 4.43 6.06 -2.91 -0.02 4.41 16 35 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.24 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.22 0.88 8.06 -2.91 -0.02 0.85 16 38 H 0.14 4.39 6.25 -2.91 -0.02 4.38 16 39 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -78.80 343.77 2.84 -75.96 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -0.47 Total: 13.05 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 8.18 Total: -5.28 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -6.59 Total: -101.43 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.24 Total: -29.43 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.96 Total: 47.13 kcal Total: -78.80 2.84 -75.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563110266.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.290 kcal (2) G-P(sol) polarization free energy of solvation -78.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds